Wall clock time and date at job start Sat Apr 11 2020 07:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00024 * 2 1 4 4 H 1.48497 * 109.47540 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47204 * 300.00385 * 3 2 1 6 6 H 1.48507 * 109.47175 * 59.99586 * 3 2 1 7 7 C 1.37875 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99769 * 185.19522 * 7 2 1 9 9 C 1.50698 * 120.00103 * 5.19594 * 7 2 1 10 10 H 1.08997 * 109.47215 * 24.87960 * 9 7 2 11 11 C 1.50701 * 109.46931 * 144.87968 * 9 7 2 12 12 O 1.21284 * 119.99778 * 119.99912 * 11 9 7 13 13 N 1.34772 * 120.00422 * 299.99790 * 11 9 7 14 14 C 1.46490 * 120.00449 * 180.02562 * 13 11 9 15 15 H 1.09002 * 109.47239 * 34.99702 * 14 13 11 16 16 C 1.53006 * 109.47078 * 275.00125 * 14 13 11 17 17 O 1.42899 * 109.46952 * 294.99756 * 16 14 13 18 18 C 1.52993 * 109.47528 * 155.00127 * 14 13 11 19 19 N 1.46895 * 109.47211 * 304.99933 * 18 14 13 20 20 C 1.46849 * 111.00297 * 294.20878 * 19 18 14 21 21 C 1.53040 * 109.52837 * 174.15543 * 20 19 18 22 22 C 1.53120 * 109.27256 * 59.17949 * 21 20 19 23 23 C 1.53113 * 109.16298 * 302.34578 * 22 21 20 24 24 C 1.46850 * 111.00546 * 169.99938 * 19 18 14 25 25 C 1.50701 * 109.47039 * 264.88070 * 9 7 2 26 26 C 1.38230 * 119.99912 * 306.00981 * 25 9 7 27 27 C 1.38240 * 120.00111 * 179.78279 * 26 25 9 28 28 C 1.38240 * 119.99397 * 0.45070 * 27 26 25 29 29 C 1.38234 * 120.00228 * 359.80493 * 28 27 26 30 30 C 1.38233 * 119.99958 * 126.28369 * 25 9 7 31 31 H 0.97004 * 119.99781 * 0.02562 * 1 2 3 32 32 H 0.97010 * 119.99421 * 0.02562 * 13 11 9 33 33 H 1.08999 * 109.46894 * 54.99797 * 16 14 13 34 34 H 1.09003 * 109.46995 * 174.99660 * 16 14 13 35 35 H 0.96703 * 113.99585 * 179.97438 * 17 16 14 36 36 H 1.09003 * 109.47143 * 64.99722 * 18 14 13 37 37 H 1.08998 * 109.47415 * 184.99988 * 18 14 13 38 38 H 1.09000 * 109.46428 * 294.17860 * 20 19 18 39 39 H 1.09007 * 109.46053 * 54.14448 * 20 19 18 40 40 H 1.09003 * 109.50022 * 299.24359 * 21 20 19 41 41 H 1.09000 * 109.50592 * 179.12181 * 21 20 19 42 42 H 1.09004 * 109.52123 * 182.43977 * 22 21 20 43 43 H 1.09001 * 109.52137 * 62.25498 * 22 21 20 44 44 H 1.08999 * 109.50693 * 297.70968 * 23 22 21 45 45 H 1.09010 * 109.50237 * 177.59560 * 23 22 21 46 46 H 1.08999 * 109.46032 * 305.85911 * 24 19 18 47 47 H 1.09003 * 109.45833 * 65.82053 * 24 19 18 48 48 H 1.08002 * 120.00195 * 0.02562 * 26 25 9 49 49 H 1.07994 * 120.00376 * 180.26915 * 27 26 25 50 50 H 1.08005 * 119.99342 * 179.82960 * 28 27 26 51 51 H 1.07995 * 119.99701 * 180.02562 * 29 28 27 52 52 H 1.08006 * 120.00346 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0812 -1.1959 0.0852 9 6 1.2557 -2.4965 -0.1171 10 1 0.3034 -2.3241 -0.6184 11 6 2.0747 -3.4762 -0.9174 12 8 2.4204 -4.5267 -0.4195 13 7 2.4228 -3.1852 -2.1865 14 6 3.2184 -4.1377 -2.9647 15 1 2.9338 -5.1547 -2.6948 16 6 4.7037 -3.9271 -2.6641 17 8 5.1043 -2.6350 -3.1246 18 6 2.9636 -3.9159 -4.4569 19 7 1.5219 -4.0001 -4.7253 20 6 1.0188 -5.3573 -4.4777 21 6 -0.5044 -5.3731 -4.6256 22 6 -0.8797 -4.9195 -6.0391 23 6 -0.3027 -3.5234 -6.2887 24 6 1.2145 -3.5612 -6.0926 25 6 1.0047 -3.0576 1.2589 26 6 2.0594 -3.2417 2.1332 27 6 1.8286 -3.7522 3.3970 28 6 0.5442 -4.0873 3.7830 29 6 -0.5098 -3.9081 2.9067 30 6 -0.2795 -3.3935 1.6446 31 1 -0.4850 0.8401 -0.0004 32 1 2.1465 -2.3447 -2.5846 33 1 4.8704 -3.9975 -1.5892 34 1 5.2896 -4.6922 -3.1735 35 1 6.0366 -2.4327 -2.9662 36 1 3.3300 -2.9307 -4.7455 37 1 3.4856 -4.6805 -5.0322 38 1 1.4608 -6.0456 -5.1980 39 1 1.2888 -5.6660 -3.4677 40 1 -0.9479 -4.6954 -3.8961 41 1 -0.8759 -6.3839 -4.4570 42 1 -1.9650 -4.8878 -6.1353 43 1 -0.4689 -5.6190 -6.7672 44 1 -0.7431 -2.8165 -5.5855 45 1 -0.5302 -3.2126 -7.3085 46 1 1.6267 -2.5654 -6.2556 47 1 1.6557 -4.2579 -6.8054 48 1 3.0633 -2.9831 1.8304 49 1 2.6520 -3.8920 4.0816 50 1 0.3642 -4.4887 4.7694 51 1 -1.5133 -4.1695 3.2085 52 1 -1.1031 -3.2534 0.9601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363189175.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:13 Heat of formation + Delta-G solvation = -72.327132 kcal Electronic energy + Delta-G solvation = -32099.797673 eV Core-core repulsion = 28063.240464 eV Total energy + Delta-G solvation = -4036.557209 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.55072 -38.70933 -37.74049 -36.63107 -34.50612 -33.52850 -32.55552 -31.00410 -30.78770 -29.86162 -29.40988 -27.04622 -25.86734 -23.85161 -23.21344 -22.81692 -21.54510 -21.25032 -19.99730 -19.64298 -19.12450 -17.30252 -16.64211 -16.33587 -15.89030 -15.74023 -15.37807 -14.86738 -14.55474 -14.35980 -14.32563 -14.12883 -13.96571 -13.75904 -13.57525 -13.34032 -12.93218 -12.79648 -12.65338 -12.42871 -12.36074 -12.04219 -12.00326 -11.58003 -11.51410 -11.28110 -11.16455 -10.98262 -10.96465 -10.88980 -10.68895 -10.33942 -10.30495 -10.20228 -10.18427 -9.93028 -9.77183 -9.30580 -8.67623 -8.49223 -8.19314 -8.10733 -7.87052 -7.51329 -6.17034 -4.21974 2.45501 2.48659 3.25350 3.33849 3.38017 3.82078 3.88714 4.19986 4.37558 4.54760 4.79958 4.84220 4.91655 4.94539 5.05325 5.19541 5.28184 5.36118 5.43316 5.49049 5.52569 5.53677 5.61495 5.69539 5.75854 5.78066 5.85867 5.86404 5.93028 5.96720 5.98003 6.02699 6.16833 6.19499 6.23003 6.31184 6.43050 6.50689 6.59371 6.70370 6.95674 7.06333 7.14805 7.20783 7.27782 7.43971 7.44919 7.53559 7.73168 7.80843 7.86662 8.05042 8.17796 8.63371 8.82435 9.39915 9.45497 10.91346 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.008495 B = 0.004114 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.304728 B = 6803.781723 C = 7501.180096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.073 3.927 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.061 0.939 9 C 0.052 3.948 10 H 0.088 0.912 11 C 0.529 3.471 12 O -0.580 6.580 13 N -0.698 5.698 14 C 0.154 3.846 15 H 0.089 0.911 16 C 0.066 3.934 17 O -0.563 6.563 18 C 0.053 3.947 19 N -0.529 5.529 20 C 0.055 3.945 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.117 4.117 24 C 0.059 3.941 25 C -0.005 4.005 26 C -0.085 4.085 27 C -0.136 4.136 28 C -0.151 4.151 29 C -0.132 4.132 30 C -0.118 4.118 31 H 0.264 0.736 32 H 0.410 0.590 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.373 0.627 36 H 0.091 0.909 37 H 0.037 0.963 38 H 0.026 0.974 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.026 0.974 48 H 0.109 0.891 49 H 0.104 0.896 50 H 0.103 0.897 51 H 0.105 0.895 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.864 -7.988 -10.273 13.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.131 4.131 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.031 3.969 10 H 0.105 0.895 11 C 0.319 3.681 12 O -0.460 6.460 13 N -0.349 5.349 14 C 0.048 3.952 15 H 0.107 0.893 16 C -0.014 4.014 17 O -0.367 6.367 18 C -0.075 4.075 19 N -0.253 5.253 20 C -0.073 4.073 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.069 4.069 25 C -0.006 4.006 26 C -0.103 4.103 27 C -0.154 4.154 28 C -0.169 4.169 29 C -0.150 4.150 30 C -0.136 4.136 31 H 0.074 0.926 32 H 0.246 0.754 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.219 0.781 36 H 0.109 0.891 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.044 0.956 48 H 0.127 0.873 49 H 0.122 0.878 50 H 0.121 0.879 51 H 0.123 0.877 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.058 -8.260 -9.801 12.982 hybrid contribution 1.355 0.767 -0.438 1.617 sum 3.413 -7.494 -10.239 13.139 Atomic orbital electron populations 1.69937 1.05941 1.27071 1.48414 1.24950 0.94854 0.99332 0.93972 0.86457 0.80265 0.83261 0.77614 1.19569 1.20784 1.21050 1.20688 0.93113 0.88405 1.52294 0.92051 1.18086 0.97957 0.92180 0.88715 0.89457 1.21570 0.78780 0.86653 0.81071 1.90555 1.57699 1.27113 1.70681 1.45603 1.54333 1.21770 1.13183 1.20833 0.88805 0.95187 0.90410 0.89283 1.22640 0.95677 0.84349 0.98753 1.86510 1.31144 1.34825 1.84251 1.22291 0.87620 1.02430 0.95164 1.61800 1.14152 1.24510 1.24850 1.22114 0.95513 0.88605 1.01034 1.21572 0.95286 1.01293 0.97342 1.21562 1.00357 0.96767 0.96980 1.21584 0.95009 0.97647 1.01287 1.22051 0.96383 1.00092 0.88391 1.20050 0.92040 0.91284 0.97229 1.20797 0.98983 0.97715 0.92824 1.20937 0.96227 1.01539 0.96674 1.20771 0.93378 1.03836 0.98919 1.20886 0.97834 1.01610 0.94710 1.20983 0.96978 0.99532 0.96130 0.92592 0.75410 0.92676 0.94052 0.78132 0.89088 0.94523 0.95588 0.90388 0.90608 0.91907 0.92031 0.92781 0.90632 0.91949 0.90735 0.95557 0.87298 0.87761 0.87857 0.87690 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.64 12.84 55.43 0.71 -22.93 16 2 C 0.07 1.90 5.45 -17.82 -0.10 1.81 16 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.46 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -12.94 7.47 -34.44 -0.26 -13.20 16 8 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 9 C 0.05 1.25 2.38 -94.08 -0.22 1.02 16 10 H 0.09 2.26 7.13 -51.93 -0.37 1.89 16 11 C 0.53 11.77 7.01 -10.99 -0.08 11.69 16 12 O -0.58 -13.87 15.08 5.55 0.08 -13.79 16 13 N -0.70 -13.16 4.65 -53.81 -0.25 -13.41 16 14 C 0.15 2.39 2.15 -67.94 -0.15 2.25 16 15 H 0.09 1.46 6.10 -51.93 -0.32 1.15 16 16 C 0.07 0.93 6.85 37.16 0.25 1.19 16 17 O -0.56 -7.82 12.64 -35.23 -0.45 -8.26 16 18 C 0.05 0.70 4.40 -3.83 -0.02 0.68 16 19 N -0.53 -7.04 4.38 -234.67 -1.03 -8.07 16 20 C 0.06 0.71 5.29 -3.83 -0.02 0.69 16 21 C -0.12 -1.41 6.09 -26.65 -0.16 -1.57 16 22 C -0.12 -1.24 6.00 -26.61 -0.16 -1.40 16 23 C -0.12 -1.27 6.09 -26.66 -0.16 -1.43 16 24 C 0.06 0.67 5.46 -3.83 -0.02 0.65 16 25 C 0.00 -0.12 4.30 -104.63 -0.45 -0.57 16 26 C -0.09 -1.95 8.31 -39.58 -0.33 -2.28 16 27 C -0.14 -2.75 10.05 -39.58 -0.40 -3.14 16 28 C -0.15 -2.89 10.05 -39.58 -0.40 -3.28 16 29 C -0.13 -2.63 10.05 -39.58 -0.40 -3.03 16 30 C -0.12 -2.65 9.67 -39.59 -0.38 -3.03 16 31 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.41 8.06 8.49 -40.82 -0.35 7.72 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.37 3.58 9.12 45.56 0.42 4.00 16 36 H 0.09 1.25 7.24 -51.93 -0.38 0.88 16 37 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 1.14 6.32 -51.92 -0.33 0.81 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 46 H 0.07 0.84 8.02 -51.93 -0.42 0.43 16 47 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.11 2.53 7.89 -52.49 -0.41 2.12 16 49 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 50 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 51 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 52 H 0.11 2.42 7.96 -52.48 -0.42 2.00 16 LS Contribution 415.60 15.07 6.26 6.26 Total: -1.00 -29.69 415.60 -11.16 -40.85 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -8.03 Total: 16.84 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -3.44 Total: -12.96 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -0.57 Total: -44.41 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.36 Total: -22.05 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -29.69 -11.16 -40.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363189175.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.479 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds