Wall clock time and date at job start Sat Apr 11 2020 07:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00024 * 2 1 4 4 H 1.48497 * 109.47540 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47204 * 300.00385 * 3 2 1 6 6 H 1.48507 * 109.47175 * 59.99586 * 3 2 1 7 7 C 1.37875 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99769 * 185.19522 * 7 2 1 9 9 C 1.50698 * 120.00103 * 5.19594 * 7 2 1 10 10 H 1.08997 * 109.47215 * 24.87960 * 9 7 2 11 11 C 1.50701 * 109.46931 * 144.87968 * 9 7 2 12 12 O 1.21284 * 119.99778 * 119.99912 * 11 9 7 13 13 N 1.34772 * 120.00422 * 299.99790 * 11 9 7 14 14 C 1.46490 * 120.00449 * 180.02562 * 13 11 9 15 15 H 1.09002 * 109.47239 * 34.99702 * 14 13 11 16 16 C 1.53006 * 109.47078 * 275.00125 * 14 13 11 17 17 O 1.42899 * 109.46952 * 294.99756 * 16 14 13 18 18 C 1.52993 * 109.47528 * 155.00127 * 14 13 11 19 19 N 1.46895 * 109.47211 * 304.99933 * 18 14 13 20 20 C 1.46849 * 111.00297 * 294.20878 * 19 18 14 21 21 C 1.53040 * 109.52837 * 174.15543 * 20 19 18 22 22 C 1.53120 * 109.27256 * 59.17949 * 21 20 19 23 23 C 1.53113 * 109.16298 * 302.34578 * 22 21 20 24 24 C 1.46850 * 111.00546 * 169.99938 * 19 18 14 25 25 C 1.50701 * 109.47039 * 264.88070 * 9 7 2 26 26 C 1.38230 * 119.99912 * 306.00981 * 25 9 7 27 27 C 1.38240 * 120.00111 * 179.78279 * 26 25 9 28 28 C 1.38240 * 119.99397 * 0.45070 * 27 26 25 29 29 C 1.38234 * 120.00228 * 359.80493 * 28 27 26 30 30 C 1.38233 * 119.99958 * 126.28369 * 25 9 7 31 31 H 0.97004 * 119.99781 * 0.02562 * 1 2 3 32 32 H 0.97010 * 119.99421 * 0.02562 * 13 11 9 33 33 H 1.08999 * 109.46894 * 54.99797 * 16 14 13 34 34 H 1.09003 * 109.46995 * 174.99660 * 16 14 13 35 35 H 0.96703 * 113.99585 * 179.97438 * 17 16 14 36 36 H 1.09003 * 109.47143 * 64.99722 * 18 14 13 37 37 H 1.08998 * 109.47415 * 184.99988 * 18 14 13 38 38 H 1.09000 * 109.46428 * 294.17860 * 20 19 18 39 39 H 1.09007 * 109.46053 * 54.14448 * 20 19 18 40 40 H 1.09003 * 109.50022 * 299.24359 * 21 20 19 41 41 H 1.09000 * 109.50592 * 179.12181 * 21 20 19 42 42 H 1.09004 * 109.52123 * 182.43977 * 22 21 20 43 43 H 1.09001 * 109.52137 * 62.25498 * 22 21 20 44 44 H 1.08999 * 109.50693 * 297.70968 * 23 22 21 45 45 H 1.09010 * 109.50237 * 177.59560 * 23 22 21 46 46 H 1.08999 * 109.46032 * 305.85911 * 24 19 18 47 47 H 1.09003 * 109.45833 * 65.82053 * 24 19 18 48 48 H 1.08002 * 120.00195 * 0.02562 * 26 25 9 49 49 H 1.07994 * 120.00376 * 180.26915 * 27 26 25 50 50 H 1.08005 * 119.99342 * 179.82960 * 28 27 26 51 51 H 1.07995 * 119.99701 * 180.02562 * 29 28 27 52 52 H 1.08006 * 120.00346 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0812 -1.1959 0.0852 9 6 1.2557 -2.4965 -0.1171 10 1 0.3034 -2.3241 -0.6184 11 6 2.0747 -3.4762 -0.9174 12 8 2.4204 -4.5267 -0.4195 13 7 2.4228 -3.1852 -2.1865 14 6 3.2184 -4.1377 -2.9647 15 1 2.9338 -5.1547 -2.6948 16 6 4.7037 -3.9271 -2.6641 17 8 5.1043 -2.6350 -3.1246 18 6 2.9636 -3.9159 -4.4569 19 7 1.5219 -4.0001 -4.7253 20 6 1.0188 -5.3573 -4.4777 21 6 -0.5044 -5.3731 -4.6256 22 6 -0.8797 -4.9195 -6.0391 23 6 -0.3027 -3.5234 -6.2887 24 6 1.2145 -3.5612 -6.0926 25 6 1.0047 -3.0576 1.2589 26 6 2.0594 -3.2417 2.1332 27 6 1.8286 -3.7522 3.3970 28 6 0.5442 -4.0873 3.7830 29 6 -0.5098 -3.9081 2.9067 30 6 -0.2795 -3.3935 1.6446 31 1 -0.4850 0.8401 -0.0004 32 1 2.1465 -2.3447 -2.5846 33 1 4.8704 -3.9975 -1.5892 34 1 5.2896 -4.6922 -3.1735 35 1 6.0366 -2.4327 -2.9662 36 1 3.3300 -2.9307 -4.7455 37 1 3.4856 -4.6805 -5.0322 38 1 1.4608 -6.0456 -5.1980 39 1 1.2888 -5.6660 -3.4677 40 1 -0.9479 -4.6954 -3.8961 41 1 -0.8759 -6.3839 -4.4570 42 1 -1.9650 -4.8878 -6.1353 43 1 -0.4689 -5.6190 -6.7672 44 1 -0.7431 -2.8165 -5.5855 45 1 -0.5302 -3.2126 -7.3085 46 1 1.6267 -2.5654 -6.2556 47 1 1.6557 -4.2579 -6.8054 48 1 3.0633 -2.9831 1.8304 49 1 2.6520 -3.8920 4.0816 50 1 0.3642 -4.4887 4.7694 51 1 -1.5133 -4.1695 3.2085 52 1 -1.1031 -3.2534 0.9601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363189175.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:12 Heat of formation + Delta-G solvation = -91.902294 kcal Electronic energy + Delta-G solvation = -32100.646516 eV Core-core repulsion = 28063.240464 eV Total energy + Delta-G solvation = -4037.406052 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.01536 -40.04469 -39.22416 -37.91332 -35.72101 -35.45413 -33.81421 -32.83828 -31.75677 -31.51867 -30.74738 -28.80847 -26.91985 -25.75743 -24.26046 -23.81939 -23.20269 -22.77176 -21.34302 -20.89903 -20.52137 -18.68367 -18.41490 -17.71836 -17.49120 -17.21368 -16.68672 -16.27301 -15.98816 -15.82327 -15.70001 -15.30128 -15.24119 -15.11504 -14.92707 -14.57417 -14.35110 -14.13247 -13.99833 -13.91943 -13.83026 -13.46474 -13.33214 -13.15869 -13.00297 -12.83823 -12.73989 -12.48529 -12.16620 -12.14246 -12.06772 -11.91383 -11.65411 -11.59817 -11.25518 -11.23265 -11.18820 -10.91490 -10.64753 -10.32254 -9.69025 -9.54016 -9.23671 -9.17247 -8.16930 -6.27334 0.77455 0.83277 1.41686 1.44414 1.55180 2.06858 2.45881 2.59001 2.95535 3.12347 3.30336 3.44237 3.77213 3.89996 3.98485 4.08272 4.18878 4.24351 4.31252 4.32530 4.37726 4.40624 4.46328 4.47577 4.49461 4.56887 4.63213 4.67531 4.75295 4.75715 4.86345 4.89728 4.93624 4.99885 5.02381 5.08200 5.12937 5.15609 5.23972 5.32511 5.39795 5.47720 5.49395 5.68486 5.79765 5.81323 5.87485 6.00136 6.18634 6.23843 6.27842 6.43094 6.77493 6.90898 6.94456 7.39133 7.68427 8.91299 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.008495 B = 0.004114 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.304728 B = 6803.781723 C = 7501.180096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.032 3.968 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.507 4.507 8 H 0.049 0.951 9 C 0.055 3.945 10 H 0.059 0.941 11 C 0.529 3.471 12 O -0.601 6.601 13 N -0.687 5.687 14 C 0.149 3.851 15 H 0.079 0.921 16 C 0.073 3.927 17 O -0.576 6.576 18 C 0.065 3.935 19 N -0.551 5.551 20 C 0.059 3.941 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.116 4.116 24 C 0.059 3.941 25 C -0.033 4.033 26 C -0.110 4.110 27 C -0.135 4.135 28 C -0.144 4.144 29 C -0.129 4.129 30 C -0.143 4.143 31 H 0.265 0.735 32 H 0.405 0.595 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.392 0.608 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.093 0.907 49 H 0.136 0.864 50 H 0.147 0.853 51 H 0.139 0.861 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -8.712 -10.725 14.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.170 4.170 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.212 1.212 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.033 3.967 10 H 0.077 0.923 11 C 0.318 3.682 12 O -0.483 6.483 13 N -0.336 5.336 14 C 0.043 3.957 15 H 0.097 0.903 16 C -0.006 4.006 17 O -0.383 6.383 18 C -0.063 4.063 19 N -0.276 5.276 20 C -0.069 4.069 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.154 4.154 24 C -0.068 4.068 25 C -0.034 4.034 26 C -0.128 4.128 27 C -0.153 4.153 28 C -0.162 4.162 29 C -0.147 4.147 30 C -0.161 4.161 31 H 0.074 0.926 32 H 0.240 0.760 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.241 0.759 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.061 0.939 48 H 0.111 0.889 49 H 0.153 0.847 50 H 0.165 0.835 51 H 0.157 0.843 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.763 -8.982 -10.285 13.931 hybrid contribution 1.139 0.930 -0.270 1.495 sum 3.902 -8.053 -10.554 13.837 Atomic orbital electron populations 1.70043 1.07072 1.27647 1.49520 1.25590 0.95515 1.02030 0.93831 0.85563 0.79107 0.79739 0.77594 1.19344 1.19990 1.21183 1.20712 0.92456 0.89360 1.51966 0.93263 1.17948 0.96677 0.92475 0.89551 0.92336 1.21238 0.78829 0.86065 0.82038 1.90519 1.58713 1.27695 1.71408 1.45525 1.53834 1.21935 1.12267 1.21085 0.89300 0.93646 0.91638 0.90344 1.22477 0.95053 0.85664 0.97444 1.86460 1.33112 1.34674 1.84070 1.22153 0.87977 1.02912 0.93240 1.61760 1.14305 1.24989 1.26516 1.22039 0.96026 0.88777 1.00040 1.21562 0.94719 1.01291 0.97931 1.21532 1.00954 0.96705 0.95892 1.21586 0.94544 0.97434 1.01863 1.22091 0.96811 1.00399 0.87502 1.20127 0.93185 0.92909 0.97193 1.20809 0.97980 0.99624 0.94385 1.21319 0.98089 1.00063 0.95822 1.21255 0.92322 1.02225 1.00422 1.21285 0.99970 0.99997 0.93460 1.21111 0.96256 1.01067 0.97708 0.92590 0.75972 0.95559 0.90429 0.75887 0.89446 0.92161 0.93814 0.92913 0.93579 0.90771 0.91257 0.91117 0.93017 0.89787 0.90762 0.93924 0.88889 0.84658 0.83521 0.84348 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.51 12.84 21.45 0.28 -50.24 16 2 C 0.03 1.70 5.45 84.65 0.46 2.16 16 3 Si 0.95 42.79 29.54 68.60 2.03 44.82 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.51 -27.02 7.47 25.60 0.19 -26.83 16 8 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 9 C 0.05 2.81 2.38 -13.03 -0.03 2.77 16 10 H 0.06 3.28 7.13 -2.39 -0.02 3.26 16 11 C 0.53 24.92 7.01 87.66 0.61 25.54 16 12 O -0.60 -30.20 15.08 -3.04 -0.05 -30.24 16 13 N -0.69 -27.18 4.65 -442.55 -2.06 -29.24 16 14 C 0.15 4.68 2.15 44.99 0.10 4.77 16 15 H 0.08 2.66 6.10 -2.39 -0.01 2.64 16 16 C 0.07 2.05 6.85 71.98 0.49 2.54 16 17 O -0.58 -15.48 12.64 -148.98 -1.88 -17.36 16 18 C 0.07 1.66 4.40 86.30 0.38 2.04 16 19 N -0.55 -14.55 4.38 -896.36 -3.93 -18.47 16 20 C 0.06 1.51 5.29 86.33 0.46 1.96 16 21 C -0.12 -2.83 6.09 30.65 0.19 -2.64 16 22 C -0.11 -2.20 6.00 30.67 0.18 -2.02 16 23 C -0.12 -2.40 6.09 30.64 0.19 -2.22 16 24 C 0.06 1.28 5.46 86.32 0.47 1.75 16 25 C -0.03 -1.66 4.30 -19.87 -0.09 -1.74 16 26 C -0.11 -5.17 8.31 22.27 0.18 -4.98 16 27 C -0.14 -5.29 10.05 22.27 0.22 -5.06 16 28 C -0.14 -5.14 10.05 22.27 0.22 -4.91 16 29 C -0.13 -4.96 10.05 22.27 0.22 -4.74 16 30 C -0.14 -6.62 9.67 22.27 0.22 -6.40 16 31 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 32 H 0.41 16.77 8.49 -92.70 -0.79 15.99 16 33 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.39 7.02 9.12 -74.06 -0.68 6.34 16 36 H 0.09 2.32 7.24 -2.39 -0.02 2.30 16 37 H 0.06 1.27 8.12 -2.39 -0.02 1.25 16 38 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.05 1.60 6.32 -2.38 -0.02 1.59 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 46 H 0.07 1.60 8.02 -2.39 -0.02 1.58 16 47 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.09 4.54 7.89 -2.91 -0.02 4.52 16 49 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 50 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 51 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 52 H 0.10 4.75 7.96 -2.91 -0.02 4.73 16 Total: -1.00 -66.88 415.60 -1.48 -68.36 By element: Atomic # 1 Polarization: 50.93 SS G_CDS: -0.55 Total: 50.38 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 4.68 Total: -18.01 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -5.71 Total: -97.95 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -1.93 Total: -47.60 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -66.88 -1.48 -68.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363189175.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.542 kcal (2) G-P(sol) polarization free energy of solvation -66.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds