Wall clock time and date at job start Sat Apr 11 2020 07:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86807 * 119.99879 * 2 1 4 4 H 1.48493 * 109.47132 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46921 * 300.00153 * 3 2 1 6 6 H 1.48498 * 109.47255 * 59.99687 * 3 2 1 7 7 C 1.37876 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99763 * 175.28557 * 7 2 1 9 9 C 1.50697 * 119.99968 * 355.28858 * 7 2 1 10 10 H 1.09004 * 109.47158 * 35.01914 * 9 7 2 11 11 C 1.50700 * 109.46966 * 155.01614 * 9 7 2 12 12 O 1.21276 * 119.99980 * 120.00113 * 11 9 7 13 13 N 1.34774 * 120.00378 * 300.00204 * 11 9 7 14 14 C 1.46495 * 120.00406 * 180.02562 * 13 11 9 15 15 H 1.08999 * 109.50332 * 34.99526 * 14 13 11 16 16 C 1.53118 * 109.50285 * 274.92010 * 14 13 11 17 17 C 1.53122 * 109.16007 * 182.43940 * 16 14 13 18 18 C 1.53039 * 109.30805 * 57.59787 * 17 16 14 19 19 N 1.46847 * 109.52403 * 300.83900 * 18 17 16 20 20 C 1.46896 * 111.00359 * 185.84147 * 19 18 17 21 21 C 1.53001 * 109.47003 * 45.78889 * 20 19 18 22 22 C 1.52997 * 109.47108 * 180.02562 * 21 20 19 23 23 O 1.42898 * 109.47269 * 180.02562 * 22 21 20 24 24 C 1.46845 * 111.19606 * 61.73814 * 19 18 17 25 25 C 1.50693 * 109.47372 * 275.01662 * 9 7 2 26 26 C 1.38230 * 120.00097 * 306.36077 * 25 9 7 27 27 C 1.38241 * 120.00213 * 179.80572 * 26 25 9 28 28 C 1.38232 * 119.99851 * 0.41815 * 27 26 25 29 29 C 1.38237 * 119.99958 * 359.80966 * 28 27 26 30 30 C 1.38235 * 119.99744 * 126.62421 * 25 9 7 31 31 H 0.96993 * 119.99682 * 185.56617 * 1 2 3 32 32 H 0.97003 * 119.99747 * 359.97438 * 13 11 9 33 33 H 1.08994 * 109.52628 * 302.30668 * 16 14 13 34 34 H 1.09007 * 109.52617 * 62.49622 * 16 14 13 35 35 H 1.08995 * 109.47353 * 297.65685 * 17 16 14 36 36 H 1.09010 * 109.53801 * 177.57336 * 17 16 14 37 37 H 1.09004 * 109.45948 * 180.82365 * 18 17 16 38 38 H 1.08996 * 109.46083 * 60.85745 * 18 17 16 39 39 H 1.09001 * 109.47286 * 165.78962 * 20 19 18 40 40 H 1.09002 * 109.47180 * 285.79323 * 20 19 18 41 41 H 1.09001 * 109.47159 * 300.00150 * 21 20 19 42 42 H 1.09000 * 109.47269 * 60.00418 * 21 20 19 43 43 H 1.09001 * 109.47053 * 299.99995 * 22 21 20 44 44 H 1.09002 * 109.47308 * 60.00292 * 22 21 20 45 45 H 0.96701 * 114.00132 * 180.02562 * 23 22 21 46 46 H 1.08999 * 109.46065 * 178.23952 * 24 19 18 47 47 H 1.09007 * 109.45818 * 58.28052 * 24 19 18 48 48 H 1.08004 * 119.99878 * 359.97438 * 26 25 9 49 49 H 1.07995 * 120.00236 * 180.20422 * 27 26 25 50 50 H 1.07998 * 120.00065 * 179.78837 * 28 27 26 51 51 H 1.08000 * 120.00076 * 179.97438 * 29 28 27 52 52 H 1.08000 * 120.00578 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0818 -1.1956 -0.0763 9 6 1.2550 -2.4969 0.1083 10 1 0.3046 -2.4139 -0.4191 11 6 2.0759 -3.6011 -0.5064 12 8 2.4187 -4.5491 0.1677 13 7 2.4290 -3.5351 -1.8054 14 6 3.2265 -4.6088 -2.4031 15 1 2.9403 -5.5635 -1.9620 16 6 4.7124 -4.3491 -2.1400 17 6 5.5417 -5.4423 -2.8196 18 6 5.2276 -5.4583 -4.3173 19 7 3.7947 -5.7114 -4.5155 20 6 3.4806 -5.8713 -5.9416 21 6 4.5094 -6.8002 -6.5894 22 6 4.1827 -6.9662 -8.0748 23 8 5.1432 -7.8342 -8.6797 24 6 2.9795 -4.6491 -3.9129 25 6 0.9983 -2.8102 1.5598 26 6 2.0486 -2.8328 2.4582 27 6 1.8126 -3.1163 3.7905 28 6 0.5275 -3.3857 4.2227 29 6 -0.5221 -3.3677 3.3234 30 6 -0.2867 -3.0804 1.9918 31 1 -0.4849 -0.8361 0.0815 32 1 2.1545 -2.7770 -2.3447 33 1 4.9898 -3.3766 -2.5464 34 1 4.9001 -4.3631 -1.0663 35 1 5.2926 -6.4103 -2.3851 36 1 6.6027 -5.2395 -2.6725 37 1 5.8058 -6.2454 -4.8012 38 1 5.4899 -4.4946 -4.7537 39 1 2.4848 -6.3013 -6.0483 40 1 3.5106 -4.8980 -6.4315 41 1 5.5053 -6.3701 -6.4826 42 1 4.4795 -7.7734 -6.0995 43 1 3.1868 -7.3960 -8.1819 44 1 4.2130 -5.9928 -8.5645 45 1 4.9978 -7.9847 -9.6238 46 1 1.9249 -4.8484 -4.1032 47 1 3.2524 -3.6891 -4.3513 48 1 3.0532 -2.6262 2.1198 49 1 2.6327 -3.1307 4.4930 50 1 0.3437 -3.6105 5.2629 51 1 -1.5261 -3.5786 3.6609 52 1 -1.1068 -3.0666 1.2892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363271527.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:26 Heat of formation + Delta-G solvation = -74.818796 kcal Electronic energy + Delta-G solvation = -30695.487395 eV Core-core repulsion = 26658.822139 eV Total energy + Delta-G solvation = -4036.665255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.83722 -38.91861 -37.81057 -37.23673 -34.94479 -33.97080 -32.95452 -31.33211 -30.88777 -30.02880 -29.36466 -26.97852 -25.95071 -23.90708 -23.31059 -22.89915 -21.65624 -21.32210 -20.51970 -19.89251 -19.37615 -17.74153 -17.33303 -16.49546 -16.13666 -16.05456 -15.78916 -15.27271 -14.85821 -14.56123 -14.36321 -14.15045 -14.12801 -13.92234 -13.83732 -13.40230 -13.19379 -13.08014 -12.87352 -12.55074 -12.44134 -12.22049 -12.14071 -11.81779 -11.62459 -11.53212 -11.49869 -11.17482 -11.00956 -10.83645 -10.70852 -10.63184 -10.42496 -10.32501 -10.28576 -10.23944 -10.14420 -9.03163 -8.82523 -8.54484 -8.49237 -8.39199 -8.03086 -7.67174 -6.57424 -4.33771 2.27761 2.32504 3.32901 3.36755 3.37537 3.50177 3.61462 3.91933 4.18115 4.37477 4.58674 4.73644 4.78969 4.84639 4.86472 4.97194 5.00591 5.10083 5.16176 5.17599 5.26765 5.34428 5.38484 5.51111 5.62357 5.65583 5.69009 5.70736 5.81358 5.82284 5.84584 5.88716 5.99704 6.03572 6.08156 6.18526 6.38883 6.41120 6.46179 6.50261 6.63141 6.86100 6.87529 6.90448 6.97297 7.19318 7.22396 7.28485 7.35058 7.58174 7.82164 7.94702 8.18913 8.29611 8.60350 9.15347 9.38488 10.80708 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.002548 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.908779 B =10986.236069 C =12063.159818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.032 3.968 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.590 4.590 8 H 0.058 0.942 9 C 0.043 3.957 10 H 0.064 0.936 11 C 0.536 3.464 12 O -0.561 6.561 13 N -0.727 5.727 14 C 0.152 3.848 15 H 0.090 0.910 16 C -0.131 4.131 17 C -0.114 4.114 18 C 0.047 3.953 19 N -0.533 5.533 20 C 0.060 3.940 21 C -0.125 4.125 22 C 0.077 3.923 23 O -0.575 6.575 24 C 0.052 3.948 25 C -0.020 4.020 26 C -0.078 4.078 27 C -0.133 4.133 28 C -0.146 4.146 29 C -0.129 4.129 30 C -0.127 4.127 31 H 0.273 0.727 32 H 0.403 0.597 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.033 0.967 39 H 0.078 0.922 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.047 0.953 44 H 0.045 0.955 45 H 0.380 0.620 46 H 0.080 0.920 47 H 0.040 0.960 48 H 0.112 0.888 49 H 0.108 0.892 50 H 0.107 0.893 51 H 0.108 0.892 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.241 -9.588 -12.135 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.175 4.175 3 Si 0.901 3.099 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.628 4.628 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.082 0.918 11 C 0.326 3.674 12 O -0.440 6.440 13 N -0.378 5.378 14 C 0.046 3.954 15 H 0.108 0.892 16 C -0.170 4.170 17 C -0.152 4.152 18 C -0.081 4.081 19 N -0.258 5.258 20 C -0.068 4.068 21 C -0.163 4.163 22 C -0.002 4.002 23 O -0.381 6.381 24 C -0.076 4.076 25 C -0.021 4.021 26 C -0.096 4.096 27 C -0.151 4.151 28 C -0.164 4.164 29 C -0.147 4.147 30 C -0.145 4.145 31 H 0.085 0.915 32 H 0.237 0.763 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.051 0.949 39 H 0.097 0.903 40 H 0.054 0.946 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.226 0.774 46 H 0.098 0.902 47 H 0.058 0.942 48 H 0.130 0.870 49 H 0.126 0.874 50 H 0.125 0.875 51 H 0.126 0.874 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.385 -9.065 -10.875 15.531 hybrid contribution -0.054 -0.328 -1.083 1.133 sum 6.331 -9.393 -11.958 16.471 Atomic orbital electron populations 1.70744 1.06840 1.31359 1.44126 1.25839 0.96377 1.02546 0.92748 0.83476 0.74577 0.74689 0.77197 1.21336 1.21173 1.21152 1.21607 0.94586 0.89488 1.57131 0.92388 1.18159 0.97094 0.93322 0.89298 0.91827 1.21225 0.78844 0.86626 0.80730 1.90591 1.56784 1.35279 1.61325 1.45909 1.55681 1.24307 1.11926 1.20701 0.90638 0.92684 0.91368 0.89194 1.21986 0.94968 0.98354 1.01666 1.21551 0.99373 1.00059 0.94224 1.22291 0.88531 0.99914 0.97316 1.61858 1.05418 1.45112 1.13394 1.21981 0.99317 0.98064 0.87452 1.21667 0.99792 1.01397 0.93402 1.22127 0.91341 0.92783 0.93904 1.86473 1.54380 1.69483 1.27747 1.22283 0.98185 0.92609 0.94567 1.20102 0.92318 0.92603 0.97059 1.20794 0.99052 0.97517 0.92236 1.20988 0.96359 1.01787 0.95961 1.20824 0.93321 1.03691 0.98554 1.20887 0.98069 1.01982 0.93767 1.20973 0.96709 1.01278 0.95588 0.91524 0.76267 0.92133 0.91026 0.90965 0.91415 0.90016 0.94863 0.90348 0.94624 0.90766 0.90157 0.93458 0.93717 0.77361 0.90203 0.94228 0.86987 0.87403 0.87518 0.87407 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 13.62 55.43 0.76 -23.85 16 2 C 0.03 0.82 5.46 -17.82 -0.10 0.72 16 3 Si 1.07 23.56 29.91 -169.99 -5.08 18.47 16 4 H -0.29 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.59 -14.76 7.46 -34.44 -0.26 -15.02 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.04 1.00 2.01 -94.08 -0.19 0.81 16 10 H 0.06 1.55 6.42 -51.93 -0.33 1.21 16 11 C 0.54 11.77 7.00 -10.99 -0.08 11.69 16 12 O -0.56 -13.56 15.09 5.56 0.08 -13.48 16 13 N -0.73 -13.12 4.98 -53.74 -0.27 -13.38 16 14 C 0.15 2.35 2.62 -67.86 -0.18 2.18 16 15 H 0.09 1.60 7.58 -51.93 -0.39 1.20 16 16 C -0.13 -1.93 5.58 -26.61 -0.15 -2.08 16 17 C -0.11 -1.35 6.09 -26.65 -0.16 -1.52 16 18 C 0.05 0.50 4.85 -3.83 -0.02 0.49 16 19 N -0.53 -6.05 4.81 -234.67 -1.13 -7.17 16 20 C 0.06 0.55 5.27 -3.83 -0.02 0.53 16 21 C -0.12 -1.07 4.83 -26.73 -0.13 -1.20 16 22 C 0.08 0.55 7.05 37.16 0.26 0.81 16 23 O -0.58 -4.64 13.66 -35.23 -0.48 -5.12 16 24 C 0.05 0.65 4.90 -3.84 -0.02 0.63 16 25 C -0.02 -0.46 4.30 -104.63 -0.45 -0.91 16 26 C -0.08 -1.77 8.32 -39.58 -0.33 -2.10 16 27 C -0.13 -2.65 10.05 -39.58 -0.40 -3.05 16 28 C -0.15 -2.73 10.05 -39.58 -0.40 -3.13 16 29 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16 30 C -0.13 -2.77 9.67 -39.58 -0.38 -3.15 16 31 H 0.27 7.43 6.66 -40.82 -0.27 7.16 16 32 H 0.40 6.93 8.49 -40.82 -0.35 6.58 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.08 0.79 5.81 -51.93 -0.30 0.49 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 41 H 0.07 0.66 6.21 -51.93 -0.32 0.34 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.38 1.28 9.12 45.56 0.42 1.69 16 46 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 47 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.11 2.60 7.88 -52.48 -0.41 2.19 16 49 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 50 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 51 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 52 H 0.11 2.23 7.96 -52.49 -0.42 1.81 16 LS Contribution 414.67 15.07 6.25 6.25 Total: -1.00 -31.03 414.67 -11.19 -42.22 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -7.93 Total: 13.26 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -3.39 Total: -17.20 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.64 Total: -44.41 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.40 Total: -18.59 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.08 Total: 18.47 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.03 -11.19 -42.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363271527.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.596 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds