Wall clock time and date at job start Sat Apr 11 2020 07:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86807 * 119.99879 * 2 1 4 4 H 1.48493 * 109.47132 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46921 * 300.00153 * 3 2 1 6 6 H 1.48498 * 109.47255 * 59.99687 * 3 2 1 7 7 C 1.37876 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99763 * 175.28557 * 7 2 1 9 9 C 1.50697 * 119.99968 * 355.28858 * 7 2 1 10 10 H 1.09004 * 109.47158 * 35.01914 * 9 7 2 11 11 C 1.50700 * 109.46966 * 155.01614 * 9 7 2 12 12 O 1.21276 * 119.99980 * 120.00113 * 11 9 7 13 13 N 1.34774 * 120.00378 * 300.00204 * 11 9 7 14 14 C 1.46495 * 120.00406 * 180.02562 * 13 11 9 15 15 H 1.08999 * 109.50332 * 34.99526 * 14 13 11 16 16 C 1.53118 * 109.50285 * 274.92010 * 14 13 11 17 17 C 1.53122 * 109.16007 * 182.43940 * 16 14 13 18 18 C 1.53039 * 109.30805 * 57.59787 * 17 16 14 19 19 N 1.46847 * 109.52403 * 300.83900 * 18 17 16 20 20 C 1.46896 * 111.00359 * 185.84147 * 19 18 17 21 21 C 1.53001 * 109.47003 * 45.78889 * 20 19 18 22 22 C 1.52997 * 109.47108 * 180.02562 * 21 20 19 23 23 O 1.42898 * 109.47269 * 180.02562 * 22 21 20 24 24 C 1.46845 * 111.19606 * 61.73814 * 19 18 17 25 25 C 1.50693 * 109.47372 * 275.01662 * 9 7 2 26 26 C 1.38230 * 120.00097 * 306.36077 * 25 9 7 27 27 C 1.38241 * 120.00213 * 179.80572 * 26 25 9 28 28 C 1.38232 * 119.99851 * 0.41815 * 27 26 25 29 29 C 1.38237 * 119.99958 * 359.80966 * 28 27 26 30 30 C 1.38235 * 119.99744 * 126.62421 * 25 9 7 31 31 H 0.96993 * 119.99682 * 185.56617 * 1 2 3 32 32 H 0.97003 * 119.99747 * 359.97438 * 13 11 9 33 33 H 1.08994 * 109.52628 * 302.30668 * 16 14 13 34 34 H 1.09007 * 109.52617 * 62.49622 * 16 14 13 35 35 H 1.08995 * 109.47353 * 297.65685 * 17 16 14 36 36 H 1.09010 * 109.53801 * 177.57336 * 17 16 14 37 37 H 1.09004 * 109.45948 * 180.82365 * 18 17 16 38 38 H 1.08996 * 109.46083 * 60.85745 * 18 17 16 39 39 H 1.09001 * 109.47286 * 165.78962 * 20 19 18 40 40 H 1.09002 * 109.47180 * 285.79323 * 20 19 18 41 41 H 1.09001 * 109.47159 * 300.00150 * 21 20 19 42 42 H 1.09000 * 109.47269 * 60.00418 * 21 20 19 43 43 H 1.09001 * 109.47053 * 299.99995 * 22 21 20 44 44 H 1.09002 * 109.47308 * 60.00292 * 22 21 20 45 45 H 0.96701 * 114.00132 * 180.02562 * 23 22 21 46 46 H 1.08999 * 109.46065 * 178.23952 * 24 19 18 47 47 H 1.09007 * 109.45818 * 58.28052 * 24 19 18 48 48 H 1.08004 * 119.99878 * 359.97438 * 26 25 9 49 49 H 1.07995 * 120.00236 * 180.20422 * 27 26 25 50 50 H 1.07998 * 120.00065 * 179.78837 * 28 27 26 51 51 H 1.08000 * 120.00076 * 179.97438 * 29 28 27 52 52 H 1.08000 * 120.00578 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0818 -1.1956 -0.0763 9 6 1.2550 -2.4969 0.1083 10 1 0.3046 -2.4139 -0.4191 11 6 2.0759 -3.6011 -0.5064 12 8 2.4187 -4.5491 0.1677 13 7 2.4290 -3.5351 -1.8054 14 6 3.2265 -4.6088 -2.4031 15 1 2.9403 -5.5635 -1.9620 16 6 4.7124 -4.3491 -2.1400 17 6 5.5417 -5.4423 -2.8196 18 6 5.2276 -5.4583 -4.3173 19 7 3.7947 -5.7114 -4.5155 20 6 3.4806 -5.8713 -5.9416 21 6 4.5094 -6.8002 -6.5894 22 6 4.1827 -6.9662 -8.0748 23 8 5.1432 -7.8342 -8.6797 24 6 2.9795 -4.6491 -3.9129 25 6 0.9983 -2.8102 1.5598 26 6 2.0486 -2.8328 2.4582 27 6 1.8126 -3.1163 3.7905 28 6 0.5275 -3.3857 4.2227 29 6 -0.5221 -3.3677 3.3234 30 6 -0.2867 -3.0804 1.9918 31 1 -0.4849 -0.8361 0.0815 32 1 2.1545 -2.7770 -2.3447 33 1 4.9898 -3.3766 -2.5464 34 1 4.9001 -4.3631 -1.0663 35 1 5.2926 -6.4103 -2.3851 36 1 6.6027 -5.2395 -2.6725 37 1 5.8058 -6.2454 -4.8012 38 1 5.4899 -4.4946 -4.7537 39 1 2.4848 -6.3013 -6.0483 40 1 3.5106 -4.8980 -6.4315 41 1 5.5053 -6.3701 -6.4826 42 1 4.4795 -7.7734 -6.0995 43 1 3.1868 -7.3960 -8.1819 44 1 4.2130 -5.9928 -8.5645 45 1 4.9978 -7.9847 -9.6238 46 1 1.9249 -4.8484 -4.1032 47 1 3.2524 -3.6891 -4.3513 48 1 3.0532 -2.6262 2.1198 49 1 2.6327 -3.1307 4.4930 50 1 0.3437 -3.6105 5.2629 51 1 -1.5261 -3.5786 3.6609 52 1 -1.1068 -3.0666 1.2892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363271527.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:25 Heat of formation + Delta-G solvation = -96.113928 kcal Electronic energy + Delta-G solvation = -30696.410821 eV Core-core repulsion = 26658.822139 eV Total energy + Delta-G solvation = -4037.588682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.27004 -40.24604 -39.27010 -37.94892 -36.12705 -35.86937 -34.15536 -32.68372 -32.19065 -31.64605 -30.61926 -28.65614 -26.77625 -25.73009 -24.39831 -23.90719 -23.28065 -22.63747 -21.64918 -21.28961 -20.75723 -19.18702 -18.36289 -17.83554 -17.54230 -17.27888 -16.75168 -16.58244 -16.29268 -15.80773 -15.71479 -15.65080 -15.38451 -15.12986 -15.11310 -14.77016 -14.59002 -14.18102 -14.06916 -13.97977 -13.94947 -13.77298 -13.43502 -13.22362 -12.87903 -12.67109 -12.60358 -12.53777 -12.16511 -12.14564 -11.98269 -11.94073 -11.81268 -11.79431 -11.60707 -11.49048 -10.92267 -10.85856 -10.65959 -10.47758 -9.96497 -9.66352 -9.35266 -9.35121 -8.62995 -6.38814 0.64363 0.69965 1.54176 1.61785 1.77743 1.84639 2.22683 2.54719 2.90574 3.09459 3.21721 3.41454 3.67761 3.81743 3.91098 4.03307 4.09529 4.09820 4.20454 4.21771 4.24320 4.30515 4.35897 4.38267 4.39913 4.47527 4.50366 4.59421 4.63399 4.66811 4.67292 4.69672 4.82808 4.87011 4.90144 4.91642 5.02334 5.14283 5.17900 5.20448 5.25184 5.30456 5.32491 5.59352 5.68370 5.71823 5.73854 6.00834 6.04769 6.05774 6.14390 6.30182 6.53614 6.68307 6.89787 7.38684 7.44544 8.75459 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.002548 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.908779 B =10986.236069 C =12063.159818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 1.112 2.888 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.288 1.288 7 C -0.584 4.584 8 H 0.046 0.954 9 C 0.043 3.957 10 H 0.048 0.952 11 C 0.535 3.465 12 O -0.588 6.588 13 N -0.715 5.715 14 C 0.152 3.848 15 H 0.065 0.935 16 C -0.126 4.126 17 C -0.107 4.107 18 C 0.051 3.949 19 N -0.544 5.544 20 C 0.062 3.938 21 C -0.120 4.120 22 C 0.077 3.923 23 O -0.598 6.598 24 C 0.063 3.937 25 C -0.048 4.048 26 C -0.106 4.106 27 C -0.134 4.134 28 C -0.140 4.140 29 C -0.127 4.127 30 C -0.150 4.150 31 H 0.264 0.736 32 H 0.408 0.592 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.040 0.960 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.398 0.602 46 H 0.083 0.917 47 H 0.049 0.951 48 H 0.093 0.907 49 H 0.137 0.863 50 H 0.150 0.850 51 H 0.143 0.857 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.726 -9.720 -12.607 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.210 4.210 3 Si 0.936 3.064 4 H -0.201 1.201 5 H -0.199 1.199 6 H -0.214 1.214 7 C -0.621 4.621 8 H 0.064 0.936 9 C 0.022 3.978 10 H 0.066 0.934 11 C 0.323 3.677 12 O -0.469 6.469 13 N -0.365 5.365 14 C 0.047 3.953 15 H 0.083 0.917 16 C -0.165 4.165 17 C -0.146 4.146 18 C -0.077 4.077 19 N -0.270 5.270 20 C -0.065 4.065 21 C -0.158 4.158 22 C -0.001 4.001 23 O -0.406 6.406 24 C -0.066 4.066 25 C -0.049 4.049 26 C -0.124 4.124 27 C -0.152 4.152 28 C -0.158 4.158 29 C -0.145 4.145 30 C -0.168 4.168 31 H 0.075 0.925 32 H 0.243 0.757 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.248 0.752 46 H 0.101 0.899 47 H 0.067 0.933 48 H 0.111 0.889 49 H 0.155 0.845 50 H 0.168 0.832 51 H 0.161 0.839 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.881 -9.215 -11.407 16.198 hybrid contribution -0.205 -0.394 -0.903 1.006 sum 6.675 -9.609 -12.310 16.983 Atomic orbital electron populations 1.70834 1.07610 1.30873 1.46376 1.26968 0.96430 1.05435 0.92172 0.82959 0.74254 0.71804 0.77430 1.20053 1.19903 1.21386 1.21649 0.93927 0.90365 1.56193 0.93551 1.18086 0.96316 0.93340 0.90067 0.93409 1.21028 0.78827 0.86002 0.81796 1.90558 1.57951 1.36116 1.62288 1.45834 1.54999 1.24926 1.10756 1.20813 0.90685 0.90455 0.93340 0.91669 1.21912 0.94836 0.99766 0.99965 1.21522 0.99812 0.98263 0.94974 1.22290 0.88376 1.00864 0.96137 1.61837 1.05603 1.44478 1.15047 1.22005 0.99810 0.98748 0.85925 1.21596 0.99377 1.00402 0.94438 1.22118 0.91588 0.93445 0.92908 1.86415 1.54895 1.69711 1.29603 1.22109 0.98791 0.93643 0.92038 1.20177 0.93489 0.94403 0.96857 1.20816 0.98053 0.99678 0.93898 1.21363 0.98246 1.00473 0.95112 1.21317 0.92266 1.01695 1.00504 1.21325 1.00182 1.00299 0.92667 1.21171 0.96088 1.02342 0.97228 0.92523 0.75710 0.91787 0.94252 0.91880 0.89619 0.88479 0.94193 0.89822 0.93674 0.91070 0.91458 0.92460 0.92505 0.75166 0.89861 0.93330 0.88880 0.84477 0.83229 0.83943 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.70 13.62 21.45 0.29 -51.41 16 2 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 3 Si 1.11 47.61 29.91 68.60 2.05 49.67 16 4 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.58 -30.16 7.46 25.60 0.19 -29.97 16 8 H 0.05 2.45 7.81 -2.91 -0.02 2.43 16 9 C 0.04 2.13 2.01 -13.04 -0.03 2.11 16 10 H 0.05 2.47 6.42 -2.39 -0.02 2.45 16 11 C 0.53 24.67 7.00 87.66 0.61 25.29 16 12 O -0.59 -29.91 15.09 -3.02 -0.05 -29.96 16 13 N -0.71 -26.86 4.98 -442.32 -2.20 -29.06 16 14 C 0.15 4.85 2.62 45.04 0.12 4.97 16 15 H 0.07 2.43 7.58 -2.39 -0.02 2.41 16 16 C -0.13 -3.79 5.58 30.67 0.17 -3.62 16 17 C -0.11 -2.50 6.09 30.65 0.19 -2.31 16 18 C 0.05 1.01 4.85 86.33 0.42 1.42 16 19 N -0.54 -11.69 4.81 -896.37 -4.31 -16.00 16 20 C 0.06 1.02 5.27 86.30 0.46 1.47 16 21 C -0.12 -1.84 4.83 30.59 0.15 -1.70 16 22 C 0.08 0.95 7.05 71.98 0.51 1.46 16 23 O -0.60 -8.54 13.66 -148.98 -2.03 -10.57 16 24 C 0.06 1.53 4.90 86.32 0.42 1.96 16 25 C -0.05 -2.35 4.30 -19.87 -0.09 -2.43 16 26 C -0.11 -4.96 8.32 22.27 0.19 -4.78 16 27 C -0.13 -5.20 10.05 22.27 0.22 -4.97 16 28 C -0.14 -4.87 10.05 22.27 0.22 -4.65 16 29 C -0.13 -4.71 10.05 22.27 0.22 -4.48 16 30 C -0.15 -6.64 9.67 22.27 0.22 -6.42 16 31 H 0.26 14.91 6.66 -92.71 -0.62 14.29 16 32 H 0.41 14.46 8.49 -92.71 -0.79 13.67 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.10 1.68 5.81 -2.38 -0.01 1.66 16 38 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 0.68 8.08 -2.39 -0.02 0.66 16 41 H 0.07 1.13 6.21 -2.39 -0.01 1.11 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.40 1.93 9.12 -74.06 -0.68 1.26 16 46 H 0.08 1.98 8.12 -2.39 -0.02 1.96 16 47 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 48 H 0.09 4.56 7.88 -2.91 -0.02 4.54 16 49 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 50 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 51 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 52 H 0.11 4.63 7.96 -2.91 -0.02 4.60 16 Total: -1.00 -69.12 414.67 -1.99 -71.11 By element: Atomic # 1 Polarization: 43.28 SS G_CDS: -0.39 Total: 42.89 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: 4.65 Total: -26.67 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -6.22 Total: -96.47 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -2.08 Total: -40.53 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.05 Total: 49.67 kcal Total: -69.12 -1.99 -71.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363271527.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.005 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds