Wall clock time and date at job start Sat Apr 11 2020 07:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00446 * 2 1 4 4 H 1.48501 * 109.47181 * 240.00106 * 3 2 1 5 5 H 1.48500 * 109.46531 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47382 * 119.99883 * 3 2 1 7 7 C 1.37880 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00152 * 181.98501 * 7 2 1 9 9 C 1.50702 * 120.00343 * 1.98172 * 7 2 1 10 10 H 1.09003 * 109.47280 * 175.34658 * 9 7 2 11 11 C 1.50700 * 109.46485 * 55.34833 * 9 7 2 12 12 O 1.21280 * 119.99819 * 239.99943 * 11 9 7 13 13 N 1.34772 * 120.00382 * 60.00529 * 11 9 7 14 14 C 1.46498 * 120.00255 * 179.97438 * 13 11 9 15 15 H 1.09000 * 109.50657 * 324.91736 * 14 13 11 16 16 C 1.53114 * 109.50604 * 84.99916 * 14 13 11 17 17 C 1.53118 * 109.16295 * 177.63686 * 16 14 13 18 18 C 1.53038 * 109.27648 * 302.34155 * 17 16 14 19 19 N 1.46845 * 109.52455 * 59.18227 * 18 17 16 20 20 C 1.46895 * 111.00419 * 174.16073 * 19 18 17 21 21 C 1.53004 * 109.47208 * 66.03975 * 20 19 18 22 22 C 1.52999 * 109.47031 * 180.02562 * 21 20 19 23 23 O 1.42905 * 109.46739 * 180.02562 * 22 21 20 24 24 C 1.46847 * 111.19364 * 298.25554 * 19 18 17 25 25 C 1.50697 * 109.46933 * 295.35076 * 9 7 2 26 26 C 1.38233 * 120.00416 * 346.93297 * 25 9 7 27 27 C 1.38231 * 120.00158 * 179.81223 * 26 25 9 28 28 C 1.38236 * 119.99893 * 0.39410 * 27 26 25 29 29 C 1.38232 * 120.00106 * 359.86122 * 28 27 26 30 30 C 1.38232 * 119.99845 * 359.95460 * 29 28 27 31 31 H 0.97000 * 120.00130 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99860 * 359.97438 * 13 11 9 33 33 H 1.09001 * 109.52856 * 57.72714 * 16 14 13 34 34 H 1.09009 * 109.57257 * 297.57251 * 16 14 13 35 35 H 1.09005 * 109.50558 * 182.40057 * 17 16 14 36 36 H 1.08998 * 109.50805 * 62.28507 * 17 16 14 37 37 H 1.09001 * 109.46013 * 299.16322 * 18 17 16 38 38 H 1.09007 * 109.45045 * 179.19034 * 18 17 16 39 39 H 1.09003 * 109.47154 * 306.04680 * 20 19 18 40 40 H 1.08992 * 109.47427 * 186.04640 * 20 19 18 41 41 H 1.08992 * 109.47470 * 300.00639 * 21 20 19 42 42 H 1.09003 * 109.46487 * 60.00297 * 21 20 19 43 43 H 1.08996 * 109.47087 * 300.00149 * 22 21 20 44 44 H 1.08993 * 109.47314 * 60.00599 * 22 21 20 45 45 H 0.96704 * 113.99732 * 180.02562 * 23 22 21 46 46 H 1.09000 * 109.46156 * 181.75664 * 24 19 18 47 47 H 1.08999 * 109.46642 * 301.72556 * 24 19 18 48 48 H 1.08004 * 119.99523 * 0.02562 * 26 25 9 49 49 H 1.08005 * 120.00206 * 180.23521 * 27 26 25 50 50 H 1.07999 * 119.99888 * 179.82811 * 28 27 26 51 51 H 1.07995 * 120.00236 * 179.97438 * 29 28 27 52 52 H 1.08008 * 119.99868 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0840 -1.1944 0.0329 9 6 1.2516 -2.4989 -0.0440 10 1 1.9594 -3.3243 -0.1201 11 6 0.3363 -2.5099 -1.2412 12 8 -0.8608 -2.6297 -1.0881 13 7 0.8480 -2.3868 -2.4819 14 6 -0.0418 -2.3981 -3.6457 15 1 -0.8719 -3.0803 -3.4625 16 6 -0.5839 -0.9869 -3.8885 17 6 -1.4653 -0.9956 -5.1405 18 6 -0.6462 -1.4979 -6.3316 19 7 -0.1507 -2.8514 -6.0506 20 6 0.5230 -3.4200 -7.2256 21 6 1.7940 -2.6211 -7.5210 22 6 2.4953 -3.2130 -8.7452 23 8 3.6828 -2.4672 -9.0208 24 6 0.7361 -2.8598 -4.8802 25 6 0.4356 -2.6511 1.2137 26 6 0.6641 -1.8161 2.2913 27 6 -0.0871 -1.9532 3.4436 28 6 -1.0614 -2.9308 3.5212 29 6 -1.2864 -3.7693 2.4455 30 6 -0.5377 -3.6297 1.2919 31 1 -0.4850 0.8400 0.0004 32 1 1.8054 -2.2906 -2.6043 33 1 0.2476 -0.2970 -4.0332 34 1 -1.1749 -0.6698 -3.0291 35 1 -1.8199 0.0151 -5.3430 36 1 -2.3179 -1.6556 -4.9809 37 1 0.1984 -0.8295 -6.4993 38 1 -1.2751 -1.5189 -7.2217 39 1 -0.1446 -3.3718 -8.0859 40 1 0.7849 -4.4592 -7.0268 41 1 1.5321 -1.5820 -7.7198 42 1 2.4616 -2.6694 -6.6607 43 1 2.7573 -4.2522 -8.5468 44 1 1.8276 -3.1644 -9.6053 45 1 4.1794 -2.7871 -9.7864 46 1 1.1114 -3.8699 -4.7161 47 1 1.5742 -2.1851 -5.0546 48 1 1.4273 -1.0542 2.2317 49 1 0.0889 -1.2983 4.2842 50 1 -1.6464 -3.0398 4.4224 51 1 -2.0472 -4.5333 2.5063 52 1 -0.7138 -4.2846 0.4513 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363271532.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:29 Heat of formation + Delta-G solvation = -65.531866 kcal Electronic energy + Delta-G solvation = -31557.337730 eV Core-core repulsion = 27521.075186 eV Total energy + Delta-G solvation = -4036.262544 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.64045 -38.68861 -37.48096 -36.99272 -34.63532 -33.55345 -32.77356 -30.80202 -30.71002 -29.63284 -29.21385 -27.01188 -25.81605 -23.96937 -23.20370 -22.55056 -21.58199 -21.21036 -20.32920 -19.39982 -18.93073 -17.64621 -16.80866 -16.27872 -15.93803 -15.59489 -15.23747 -14.91704 -14.78208 -14.61084 -14.59009 -14.01622 -13.79861 -13.60744 -13.49304 -13.22960 -12.99787 -12.74325 -12.50279 -12.33062 -12.20616 -12.13847 -11.94002 -11.84146 -11.35272 -11.26852 -11.25363 -10.94614 -10.85154 -10.78578 -10.63255 -10.46350 -10.30327 -10.24001 -10.11254 -10.01126 -9.62050 -9.33931 -8.67235 -8.33838 -8.23323 -7.92104 -7.64276 -7.35166 -6.10137 -4.26251 2.59153 2.65744 3.21752 3.29442 3.30614 3.69400 3.94295 4.19072 4.33040 4.52805 4.65245 4.87772 5.00226 5.04784 5.06413 5.11064 5.16358 5.18963 5.20448 5.36484 5.44036 5.48208 5.52046 5.70462 5.80125 5.88165 5.89576 5.97101 5.98042 6.02198 6.07492 6.10088 6.26399 6.32352 6.42575 6.56416 6.71650 6.75034 6.85965 6.86813 6.95946 7.04105 7.05303 7.18031 7.26167 7.31561 7.58552 7.64386 7.69479 7.71927 7.84131 8.20965 8.31887 8.65845 8.86220 9.40017 9.77125 10.89871 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.012817 B = 0.003035 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.133486 B = 9223.965981 C =10078.772431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.078 3.922 3 Si 0.884 3.116 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.057 3.943 10 H 0.055 0.945 11 C 0.554 3.446 12 O -0.546 6.546 13 N -0.733 5.733 14 C 0.159 3.841 15 H 0.085 0.915 16 C -0.128 4.128 17 C -0.114 4.114 18 C 0.053 3.947 19 N -0.528 5.528 20 C 0.060 3.940 21 C -0.163 4.163 22 C 0.080 3.920 23 O -0.576 6.576 24 C 0.048 3.952 25 C -0.013 4.013 26 C -0.066 4.066 27 C -0.148 4.148 28 C -0.146 4.146 29 C -0.144 4.144 30 C -0.100 4.100 31 H 0.264 0.736 32 H 0.393 0.607 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.046 0.954 44 H 0.044 0.956 45 H 0.378 0.622 46 H 0.076 0.924 47 H 0.041 0.959 48 H 0.127 0.873 49 H 0.101 0.899 50 H 0.099 0.901 51 H 0.100 0.900 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 -6.017 -13.591 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.131 4.131 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.083 0.917 9 C 0.035 3.965 10 H 0.073 0.927 11 C 0.343 3.657 12 O -0.422 6.422 13 N -0.385 5.385 14 C 0.053 3.947 15 H 0.103 0.897 16 C -0.167 4.167 17 C -0.153 4.153 18 C -0.075 4.075 19 N -0.251 5.251 20 C -0.068 4.068 21 C -0.202 4.202 22 C 0.002 3.998 23 O -0.381 6.381 24 C -0.080 4.080 25 C -0.014 4.014 26 C -0.084 4.084 27 C -0.166 4.166 28 C -0.164 4.164 29 C -0.163 4.163 30 C -0.118 4.118 31 H 0.075 0.925 32 H 0.226 0.774 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.225 0.775 46 H 0.095 0.905 47 H 0.059 0.941 48 H 0.145 0.855 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.118 0.882 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.798 -5.943 -12.809 14.143 hybrid contribution 1.607 1.573 -0.851 2.404 sum 2.405 -4.370 -13.660 14.542 Atomic orbital electron populations 1.70057 1.05308 1.26909 1.44811 1.25006 0.94775 0.98940 0.94347 0.86785 0.79770 0.83544 0.78804 1.20205 1.21315 1.20019 1.20639 0.92811 0.88796 1.55665 0.91711 1.17875 0.92746 0.98043 0.87807 0.92696 1.20946 0.89114 0.72065 0.83580 1.90536 1.16618 1.49498 1.85516 1.45806 1.09775 1.77576 1.05348 1.20553 0.93295 0.96519 0.84325 0.89708 1.21951 0.99428 0.97451 0.97861 1.21561 0.98779 1.00592 0.94334 1.22170 0.98155 0.88585 0.98587 1.62096 1.37237 1.22113 1.03701 1.22116 0.92822 0.98560 0.93336 1.22289 0.98381 1.01442 0.98111 1.22109 0.86172 0.94326 0.97201 1.86520 1.38945 1.59472 1.53168 1.22359 0.94161 1.01248 0.90279 1.19820 0.94527 0.92154 0.94889 1.21141 0.98494 0.97280 0.91440 1.20981 0.98202 0.99056 0.98375 1.20763 0.99637 0.97862 0.98110 1.20816 1.00592 1.00364 0.94493 1.20975 0.95963 0.98847 0.96028 0.92544 0.77392 0.92734 0.90276 0.91772 0.91150 0.94647 0.91075 0.90597 0.90421 0.91087 0.90648 0.93574 0.93754 0.77548 0.90508 0.94125 0.85490 0.88126 0.88282 0.88158 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.50 10.90 55.43 0.60 -21.90 16 2 C 0.08 1.93 4.00 -17.82 -0.07 1.86 16 3 Si 0.88 19.85 29.54 -169.99 -5.02 14.83 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.54 -13.08 7.11 -34.44 -0.24 -13.32 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.06 1.32 2.78 -94.08 -0.26 1.06 16 10 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 11 C 0.55 12.81 5.42 -10.99 -0.06 12.75 16 12 O -0.55 -14.26 13.62 5.56 0.08 -14.19 16 13 N -0.73 -14.21 4.98 -53.73 -0.27 -14.47 16 14 C 0.16 2.75 2.61 -67.85 -0.18 2.57 16 15 H 0.08 1.66 7.58 -51.93 -0.39 1.26 16 16 C -0.13 -2.26 5.58 -26.61 -0.15 -2.41 16 17 C -0.11 -1.61 6.09 -26.65 -0.16 -1.77 16 18 C 0.05 0.64 5.05 -3.83 -0.02 0.62 16 19 N -0.53 -6.48 4.86 -234.67 -1.14 -7.62 16 20 C 0.06 0.57 5.36 -3.83 -0.02 0.55 16 21 C -0.16 -1.61 4.89 -26.73 -0.13 -1.75 16 22 C 0.08 0.66 7.05 37.16 0.26 0.92 16 23 O -0.58 -5.48 13.66 -35.23 -0.48 -5.96 16 24 C 0.05 0.65 4.31 -3.83 -0.02 0.64 16 25 C -0.01 -0.31 4.51 -104.63 -0.47 -0.78 16 26 C -0.07 -1.54 8.21 -39.59 -0.32 -1.87 16 27 C -0.15 -3.13 10.05 -39.58 -0.40 -3.52 16 28 C -0.15 -2.92 10.05 -39.58 -0.40 -3.31 16 29 C -0.14 -3.00 10.05 -39.59 -0.40 -3.39 16 30 C -0.10 -2.28 8.21 -39.58 -0.33 -2.60 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.39 7.03 8.49 -40.82 -0.35 6.69 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.72 8.14 -51.92 -0.42 1.30 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.04 0.44 6.76 -51.93 -0.35 0.09 16 38 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 39 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.78 6.68 -51.93 -0.35 0.44 16 42 H 0.07 0.86 6.51 -51.93 -0.34 0.52 16 43 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.38 1.74 9.12 45.56 0.42 2.15 16 46 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 47 H 0.04 0.56 6.61 -51.93 -0.34 0.21 16 48 H 0.13 3.08 6.04 -52.48 -0.32 2.77 16 49 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 50 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 51 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 52 H 0.11 2.41 7.01 -52.48 -0.37 2.05 16 LS Contribution 404.65 15.07 6.10 6.10 Total: -1.00 -30.44 404.65 -11.34 -41.78 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -7.84 Total: 15.19 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -3.37 Total: -13.76 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.80 Total: -43.99 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.41 Total: -20.15 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.44 -11.34 -41.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363271532.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.756 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds