Wall clock time and date at job start Sat Apr 11 2020 07:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00446 * 2 1 4 4 H 1.48501 * 109.47181 * 240.00106 * 3 2 1 5 5 H 1.48500 * 109.46531 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47382 * 119.99883 * 3 2 1 7 7 C 1.37880 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00152 * 181.98501 * 7 2 1 9 9 C 1.50702 * 120.00343 * 1.98172 * 7 2 1 10 10 H 1.09003 * 109.47280 * 175.34658 * 9 7 2 11 11 C 1.50700 * 109.46485 * 55.34833 * 9 7 2 12 12 O 1.21280 * 119.99819 * 239.99943 * 11 9 7 13 13 N 1.34772 * 120.00382 * 60.00529 * 11 9 7 14 14 C 1.46498 * 120.00255 * 179.97438 * 13 11 9 15 15 H 1.09000 * 109.50657 * 324.91736 * 14 13 11 16 16 C 1.53114 * 109.50604 * 84.99916 * 14 13 11 17 17 C 1.53118 * 109.16295 * 177.63686 * 16 14 13 18 18 C 1.53038 * 109.27648 * 302.34155 * 17 16 14 19 19 N 1.46845 * 109.52455 * 59.18227 * 18 17 16 20 20 C 1.46895 * 111.00419 * 174.16073 * 19 18 17 21 21 C 1.53004 * 109.47208 * 66.03975 * 20 19 18 22 22 C 1.52999 * 109.47031 * 180.02562 * 21 20 19 23 23 O 1.42905 * 109.46739 * 180.02562 * 22 21 20 24 24 C 1.46847 * 111.19364 * 298.25554 * 19 18 17 25 25 C 1.50697 * 109.46933 * 295.35076 * 9 7 2 26 26 C 1.38233 * 120.00416 * 346.93297 * 25 9 7 27 27 C 1.38231 * 120.00158 * 179.81223 * 26 25 9 28 28 C 1.38236 * 119.99893 * 0.39410 * 27 26 25 29 29 C 1.38232 * 120.00106 * 359.86122 * 28 27 26 30 30 C 1.38232 * 119.99845 * 359.95460 * 29 28 27 31 31 H 0.97000 * 120.00130 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99860 * 359.97438 * 13 11 9 33 33 H 1.09001 * 109.52856 * 57.72714 * 16 14 13 34 34 H 1.09009 * 109.57257 * 297.57251 * 16 14 13 35 35 H 1.09005 * 109.50558 * 182.40057 * 17 16 14 36 36 H 1.08998 * 109.50805 * 62.28507 * 17 16 14 37 37 H 1.09001 * 109.46013 * 299.16322 * 18 17 16 38 38 H 1.09007 * 109.45045 * 179.19034 * 18 17 16 39 39 H 1.09003 * 109.47154 * 306.04680 * 20 19 18 40 40 H 1.08992 * 109.47427 * 186.04640 * 20 19 18 41 41 H 1.08992 * 109.47470 * 300.00639 * 21 20 19 42 42 H 1.09003 * 109.46487 * 60.00297 * 21 20 19 43 43 H 1.08996 * 109.47087 * 300.00149 * 22 21 20 44 44 H 1.08993 * 109.47314 * 60.00599 * 22 21 20 45 45 H 0.96704 * 113.99732 * 180.02562 * 23 22 21 46 46 H 1.09000 * 109.46156 * 181.75664 * 24 19 18 47 47 H 1.08999 * 109.46642 * 301.72556 * 24 19 18 48 48 H 1.08004 * 119.99523 * 0.02562 * 26 25 9 49 49 H 1.08005 * 120.00206 * 180.23521 * 27 26 25 50 50 H 1.07999 * 119.99888 * 179.82811 * 28 27 26 51 51 H 1.07995 * 120.00236 * 179.97438 * 29 28 27 52 52 H 1.08008 * 119.99868 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0840 -1.1944 0.0329 9 6 1.2516 -2.4989 -0.0440 10 1 1.9594 -3.3243 -0.1201 11 6 0.3363 -2.5099 -1.2412 12 8 -0.8608 -2.6297 -1.0881 13 7 0.8480 -2.3868 -2.4819 14 6 -0.0418 -2.3981 -3.6457 15 1 -0.8719 -3.0803 -3.4625 16 6 -0.5839 -0.9869 -3.8885 17 6 -1.4653 -0.9956 -5.1405 18 6 -0.6462 -1.4979 -6.3316 19 7 -0.1507 -2.8514 -6.0506 20 6 0.5230 -3.4200 -7.2256 21 6 1.7940 -2.6211 -7.5210 22 6 2.4953 -3.2130 -8.7452 23 8 3.6828 -2.4672 -9.0208 24 6 0.7361 -2.8598 -4.8802 25 6 0.4356 -2.6511 1.2137 26 6 0.6641 -1.8161 2.2913 27 6 -0.0871 -1.9532 3.4436 28 6 -1.0614 -2.9308 3.5212 29 6 -1.2864 -3.7693 2.4455 30 6 -0.5377 -3.6297 1.2919 31 1 -0.4850 0.8400 0.0004 32 1 1.8054 -2.2906 -2.6043 33 1 0.2476 -0.2970 -4.0332 34 1 -1.1749 -0.6698 -3.0291 35 1 -1.8199 0.0151 -5.3430 36 1 -2.3179 -1.6556 -4.9809 37 1 0.1984 -0.8295 -6.4993 38 1 -1.2751 -1.5189 -7.2217 39 1 -0.1446 -3.3718 -8.0859 40 1 0.7849 -4.4592 -7.0268 41 1 1.5321 -1.5820 -7.7198 42 1 2.4616 -2.6694 -6.6607 43 1 2.7573 -4.2522 -8.5468 44 1 1.8276 -3.1644 -9.6053 45 1 4.1794 -2.7871 -9.7864 46 1 1.1114 -3.8699 -4.7161 47 1 1.5742 -2.1851 -5.0546 48 1 1.4273 -1.0542 2.2317 49 1 0.0889 -1.2983 4.2842 50 1 -1.6464 -3.0398 4.4224 51 1 -2.0472 -4.5333 2.5063 52 1 -0.7138 -4.2846 0.4513 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363271532.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:28 Heat of formation + Delta-G solvation = -86.797711 kcal Electronic energy + Delta-G solvation = -31558.259886 eV Core-core repulsion = 27521.075186 eV Total energy + Delta-G solvation = -4037.184700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.03037 -40.17271 -38.96039 -37.87103 -35.91348 -35.44126 -34.09748 -32.62105 -31.66233 -31.33722 -30.61147 -28.73865 -26.74590 -25.81010 -24.12801 -23.86603 -22.93364 -22.60248 -21.90910 -20.96871 -20.31635 -18.61738 -18.32841 -17.69666 -17.06797 -16.98391 -16.74519 -16.58792 -16.13117 -15.83018 -15.64075 -15.51779 -15.34914 -15.14901 -14.65664 -14.60096 -14.21640 -14.11427 -13.92042 -13.88175 -13.67551 -13.54862 -13.29211 -13.14428 -12.99193 -12.73222 -12.59213 -12.37243 -12.26589 -12.08737 -11.86010 -11.77836 -11.75430 -11.68311 -11.43371 -11.37475 -11.15154 -10.85698 -10.61212 -10.10266 -9.60261 -9.36015 -9.29587 -9.08023 -8.04933 -6.24312 0.89503 0.94751 1.40587 1.43942 1.48550 2.34501 2.44425 2.59726 3.14354 3.22208 3.34630 3.39749 3.81731 3.90701 3.93127 4.03469 4.18873 4.24729 4.33168 4.35807 4.37286 4.42904 4.51232 4.53291 4.53886 4.58979 4.63423 4.70285 4.75847 4.78842 4.81288 4.90265 4.94188 5.02047 5.04783 5.12573 5.15203 5.18392 5.26098 5.34180 5.39662 5.47496 5.56313 5.71592 5.89501 5.91986 5.96757 6.00236 6.11566 6.13323 6.44723 6.54613 6.77601 6.91051 7.13142 7.44055 7.99156 8.93062 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.012817 B = 0.003035 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.133486 B = 9223.965981 C =10078.772431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.047 3.953 10 H 0.066 0.934 11 C 0.554 3.446 12 O -0.581 6.581 13 N -0.725 5.725 14 C 0.161 3.839 15 H 0.060 0.940 16 C -0.120 4.120 17 C -0.108 4.108 18 C 0.058 3.942 19 N -0.537 5.537 20 C 0.064 3.936 21 C -0.160 4.160 22 C 0.080 3.920 23 O -0.603 6.603 24 C 0.063 3.937 25 C -0.034 4.034 26 C -0.088 4.088 27 C -0.152 4.152 28 C -0.142 4.142 29 C -0.146 4.146 30 C -0.118 4.118 31 H 0.254 0.746 32 H 0.401 0.599 33 H 0.047 0.953 34 H 0.029 0.971 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.397 0.603 46 H 0.086 0.914 47 H 0.042 0.958 48 H 0.111 0.889 49 H 0.125 0.875 50 H 0.138 0.862 51 H 0.129 0.871 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.893 -6.723 -14.837 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.159 4.159 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.026 3.974 10 H 0.084 0.916 11 C 0.343 3.657 12 O -0.460 6.460 13 N -0.376 5.376 14 C 0.056 3.944 15 H 0.078 0.922 16 C -0.159 4.159 17 C -0.146 4.146 18 C -0.069 4.069 19 N -0.261 5.261 20 C -0.063 4.063 21 C -0.199 4.199 22 C 0.002 3.998 23 O -0.411 6.411 24 C -0.066 4.066 25 C -0.035 4.035 26 C -0.106 4.106 27 C -0.170 4.170 28 C -0.160 4.160 29 C -0.164 4.164 30 C -0.136 4.136 31 H 0.063 0.937 32 H 0.235 0.765 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.247 0.753 46 H 0.105 0.895 47 H 0.061 0.939 48 H 0.129 0.871 49 H 0.143 0.857 50 H 0.155 0.845 51 H 0.147 0.853 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.240 -6.664 -14.098 15.643 hybrid contribution 1.493 1.744 -0.444 2.338 sum 2.734 -4.921 -14.543 15.594 Atomic orbital electron populations 1.70226 1.06623 1.26498 1.46707 1.25482 0.95030 1.01240 0.94162 0.85988 0.78564 0.80357 0.79066 1.19597 1.22419 1.19342 1.20829 0.92982 0.89201 1.54383 0.91254 1.17992 0.93096 0.98107 0.88208 0.91590 1.20923 0.88531 0.71709 0.84550 1.90503 1.17996 1.51362 1.86181 1.45718 1.10450 1.76276 1.05153 1.20603 0.92827 0.95848 0.85143 0.92174 1.21815 0.99019 0.97258 0.97808 1.21517 0.98152 1.01461 0.93502 1.22140 0.98149 0.88465 0.98160 1.62086 1.37404 1.22272 1.04288 1.22185 0.92850 0.98674 0.92616 1.22223 0.98334 1.00951 0.98373 1.22138 0.86115 0.94545 0.96977 1.86459 1.39707 1.60384 1.54596 1.22138 0.93644 1.01562 0.89240 1.19939 0.95427 0.93028 0.95150 1.21120 0.99332 0.97459 0.92661 1.21304 0.97812 0.99612 0.98262 1.21170 0.99084 0.96584 0.99151 1.21188 1.00463 1.00966 0.93825 1.21036 0.96652 0.99020 0.96880 0.93712 0.76486 0.93442 0.95242 0.90592 0.91779 0.94661 0.88416 0.88508 0.89350 0.92319 0.92546 0.92241 0.91894 0.75288 0.89530 0.93949 0.87093 0.85660 0.84459 0.85305 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.21 10.90 21.45 0.23 -47.97 16 2 C 0.05 2.33 4.00 84.66 0.34 2.67 16 3 Si 0.93 41.30 29.54 68.60 2.03 43.33 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -26.35 7.11 25.60 0.18 -26.17 16 8 H 0.07 3.28 7.81 -2.91 -0.02 3.25 16 9 C 0.05 2.26 2.78 -13.03 -0.04 2.23 16 10 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 11 C 0.55 26.63 5.42 87.66 0.48 27.11 16 12 O -0.58 -31.89 13.62 -3.03 -0.04 -31.93 16 13 N -0.72 -29.06 4.98 -442.29 -2.20 -31.26 16 14 C 0.16 5.76 2.61 45.05 0.12 5.87 16 15 H 0.06 2.46 7.58 -2.39 -0.02 2.45 16 16 C -0.12 -4.42 5.58 30.67 0.17 -4.25 16 17 C -0.11 -3.04 6.09 30.65 0.19 -2.85 16 18 C 0.06 1.31 5.05 86.33 0.44 1.75 16 19 N -0.54 -12.25 4.86 -896.35 -4.35 -16.61 16 20 C 0.06 1.05 5.36 86.31 0.46 1.51 16 21 C -0.16 -2.83 4.89 30.60 0.15 -2.68 16 22 C 0.08 1.10 7.05 71.98 0.51 1.61 16 23 O -0.60 -10.29 13.66 -148.98 -2.04 -12.33 16 24 C 0.06 1.67 4.31 86.33 0.37 2.05 16 25 C -0.03 -1.69 4.51 -19.87 -0.09 -1.78 16 26 C -0.09 -4.17 8.21 22.27 0.18 -3.99 16 27 C -0.15 -6.27 10.05 22.27 0.22 -6.04 16 28 C -0.14 -5.39 10.05 22.27 0.22 -5.17 16 29 C -0.15 -5.91 10.05 22.27 0.22 -5.68 16 30 C -0.12 -5.45 8.21 22.27 0.18 -5.27 16 31 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.40 14.62 8.49 -92.71 -0.79 13.83 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.04 0.81 6.76 -2.39 -0.02 0.80 16 38 H 0.10 1.73 8.06 -2.38 -0.02 1.72 16 39 H 0.10 1.23 8.06 -2.39 -0.02 1.21 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 1.18 6.68 -2.39 -0.02 1.17 16 42 H 0.06 1.21 6.51 -2.39 -0.02 1.19 16 43 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.40 2.84 9.12 -74.05 -0.68 2.16 16 46 H 0.09 2.15 8.12 -2.39 -0.02 2.13 16 47 H 0.04 1.13 6.61 -2.39 -0.02 1.12 16 48 H 0.11 5.52 6.04 -2.91 -0.02 5.51 16 49 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 50 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 51 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 52 H 0.10 4.63 7.01 -2.91 -0.02 4.61 16 Total: -1.00 -68.21 404.65 -2.60 -70.81 By element: Atomic # 1 Polarization: 45.57 SS G_CDS: -0.54 Total: 45.03 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 4.31 Total: -19.09 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -6.32 Total: -95.84 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -2.08 Total: -44.25 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -68.21 -2.60 -70.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363271532.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.983 kcal (2) G-P(sol) polarization free energy of solvation -68.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds