Wall clock time and date at job start Sat Apr 11 2020 07:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99936 * 2 1 4 4 H 1.48505 * 109.47026 * 270.00029 * 3 2 1 5 5 H 1.48499 * 109.47273 * 30.00013 * 3 2 1 6 6 H 1.48498 * 109.47242 * 149.99990 * 3 2 1 7 7 C 1.38813 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00494 * 0.02562 * 7 2 1 9 9 N 1.36946 * 119.99554 * 179.97438 * 7 2 1 10 10 C 1.46508 * 119.99507 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46658 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47350 * 64.99646 * 11 10 9 13 13 N 1.46504 * 109.47135 * 304.99926 * 11 10 9 14 14 C 1.34783 * 119.99961 * 115.22952 * 13 11 10 15 15 O 1.21275 * 119.99765 * 5.30466 * 14 13 11 16 16 C 1.50694 * 119.99755 * 185.30630 * 14 13 11 17 17 C 1.53007 * 109.46789 * 180.02562 * 16 14 13 18 18 O 1.42899 * 109.46770 * 179.97438 * 17 16 14 19 19 C 1.35909 * 116.99802 * 179.97438 * 18 17 16 20 20 C 1.38734 * 120.05424 * 359.73118 * 19 18 17 21 21 C 1.38138 * 119.94014 * 179.74630 * 20 19 18 22 22 C 1.38266 * 120.06031 * 0.50247 * 21 20 19 23 23 C 1.38265 * 120.10914 * 359.76925 * 22 21 20 24 24 C 1.38145 * 120.05267 * 359.97438 * 23 22 21 25 25 C 1.52999 * 109.47116 * 185.00061 * 11 10 9 26 26 C 1.54269 * 110.03148 * 300.47870 * 25 11 10 27 27 C 1.54889 * 104.19168 * 217.10418 * 26 25 11 28 28 C 1.54891 * 102.75276 * 37.94064 * 27 26 25 29 29 C 1.53876 * 110.03490 * 183.30616 * 25 11 10 30 30 H 0.96994 * 120.00161 * 359.97438 * 1 2 3 31 31 H 0.96990 * 120.00023 * 0.02562 * 9 7 2 32 32 H 1.08991 * 109.46888 * 300.00224 * 10 9 7 33 33 H 1.08998 * 109.46669 * 60.00330 * 10 9 7 34 34 H 0.97002 * 120.00216 * 295.23061 * 13 11 10 35 35 H 1.09003 * 109.47428 * 299.99719 * 16 14 13 36 36 H 1.08998 * 109.47575 * 59.99919 * 16 14 13 37 37 H 1.08998 * 109.47069 * 299.99569 * 17 16 14 38 38 H 1.09003 * 109.47179 * 60.00345 * 17 16 14 39 39 H 1.07997 * 120.02535 * 359.97438 * 20 19 18 40 40 H 1.08005 * 119.97240 * 180.27324 * 21 20 19 41 41 H 1.07999 * 119.94592 * 179.74689 * 22 21 20 42 42 H 1.07997 * 119.97377 * 179.97438 * 23 22 21 43 43 H 1.08008 * 120.02721 * 179.97438 * 24 23 22 44 44 H 1.09005 * 110.01758 * 61.91491 * 25 11 10 45 45 H 1.09002 * 110.48262 * 335.77900 * 26 25 11 46 46 H 1.08999 * 110.48804 * 98.42425 * 26 25 11 47 47 H 1.09004 * 110.75503 * 279.61952 * 27 26 25 48 48 H 1.09006 * 110.91018 * 156.33385 * 27 26 25 49 49 H 1.09000 * 110.48729 * 203.37772 * 28 27 26 50 50 H 1.08999 * 110.59428 * 80.78888 * 28 27 26 51 51 H 1.08991 * 110.03490 * 238.57133 * 29 25 11 52 52 H 1.08996 * 110.02724 * 0.02562 * 29 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0000 11 6 5.6164 -2.1913 0.0000 12 1 5.8942 -1.6978 0.9313 13 7 5.9517 -1.3231 -1.1315 14 6 6.4264 -0.0812 -0.9104 15 8 6.6669 0.2836 0.2209 16 6 6.6582 0.8540 -2.0691 17 6 7.1959 2.1883 -1.5477 18 8 7.4163 3.0749 -2.6465 19 6 7.8962 4.3124 -2.3541 20 6 8.1445 4.6678 -1.0362 21 6 8.6372 5.9243 -0.7421 22 6 8.8732 6.8312 -1.7588 23 6 8.6213 6.4813 -3.0726 24 6 8.1335 5.2241 -3.3724 25 6 6.3804 -3.5109 -0.1257 26 6 6.0274 -4.4404 1.0538 27 6 7.3606 -5.1555 1.3860 28 6 8.4098 -4.0344 1.1823 29 6 7.8952 -3.2528 -0.0441 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 3.8491 -3.0422 0.8901 33 1 3.8485 -3.0426 -0.8898 34 1 5.8320 -1.6421 -2.0397 35 1 7.3835 0.4128 -2.7528 36 1 5.7182 1.0212 -2.5949 37 1 6.4710 2.6298 -0.8639 38 1 8.1361 2.0208 -1.0223 39 1 7.9561 3.9614 -0.2414 40 1 8.8349 6.2000 0.2833 41 1 9.2546 7.8145 -1.5264 42 1 8.8060 7.1915 -3.8650 43 1 7.9364 4.9514 -4.3987 44 1 6.1347 -3.9958 -1.0706 45 1 5.6836 -3.8580 1.9087 46 1 5.2699 -5.1649 0.7551 47 1 7.5383 -5.9809 0.6966 48 1 7.3666 -5.5076 2.4175 49 1 9.3909 -4.4628 0.9775 50 1 8.4529 -3.3860 2.0574 51 1 8.3846 -3.6131 -0.9488 52 1 8.0859 -2.1875 0.0856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500128267.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:58 Heat of formation + Delta-G solvation = -54.935472 kcal Electronic energy + Delta-G solvation = -30616.130078 eV Core-core repulsion = 26580.327029 eV Total energy + Delta-G solvation = -4035.803050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.39475 -39.92117 -38.30385 -37.48471 -35.51145 -33.70090 -32.42788 -31.37442 -31.06255 -30.09002 -29.50722 -28.67093 -26.56722 -24.94859 -23.09672 -22.62221 -21.90728 -21.24621 -20.62770 -20.24321 -19.61626 -18.54367 -17.70981 -16.87630 -16.51943 -16.29062 -16.05497 -15.82294 -15.40829 -15.20863 -14.69711 -14.57721 -14.39440 -13.83186 -13.69282 -13.60119 -13.47800 -13.38234 -13.12902 -12.88636 -12.65414 -12.27564 -12.06359 -11.90393 -11.76686 -11.59732 -11.53709 -11.13354 -11.09185 -11.02583 -10.94472 -10.89697 -10.86129 -10.69722 -10.54946 -10.41236 -10.13872 -9.77167 -9.60904 -9.18852 -8.91657 -8.79681 -8.36986 -7.23695 -5.78053 -3.12969 1.15628 1.27216 2.67055 2.77796 3.35992 3.45035 3.46134 3.56216 3.61824 4.51856 4.55756 4.59197 4.60382 4.68074 4.68843 4.75036 4.82693 4.93348 4.98739 5.11654 5.17824 5.21604 5.31978 5.42468 5.43194 5.46042 5.47695 5.52457 5.60582 5.62055 5.65039 5.66380 5.79349 5.79992 5.81454 5.82223 5.90085 6.00411 6.08421 6.14100 6.22895 6.23338 6.29503 6.34407 6.34593 6.40874 6.56926 6.59488 6.80284 7.25352 7.60298 7.98136 8.30959 8.41431 9.20789 9.93537 10.13293 11.40298 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.007776 B = 0.003336 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3599.811117 B = 8392.241295 C =11293.254294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.008 3.992 3 Si 0.872 3.128 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.753 5.753 10 C 0.147 3.853 11 C 0.133 3.867 12 H 0.101 0.899 13 N -0.711 5.711 14 C 0.521 3.479 15 O -0.542 6.542 16 C -0.144 4.144 17 C 0.075 3.925 18 O -0.317 6.317 19 C 0.134 3.866 20 C -0.208 4.208 21 C -0.080 4.080 22 C -0.163 4.163 23 C -0.083 4.083 24 C -0.155 4.155 25 C -0.096 4.096 26 C -0.117 4.117 27 C -0.124 4.124 28 C -0.125 4.125 29 C -0.117 4.117 30 H 0.259 0.741 31 H 0.362 0.638 32 H 0.039 0.961 33 H 0.029 0.971 34 H 0.401 0.599 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.059 0.941 50 H 0.064 0.936 51 H 0.059 0.941 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.156 1.118 -4.993 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.188 4.188 3 Si 0.702 3.298 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.398 5.398 10 C 0.018 3.982 11 C 0.029 3.971 12 H 0.119 0.881 13 N -0.361 5.361 14 C 0.307 3.693 15 O -0.420 6.420 16 C -0.184 4.184 17 C 0.000 4.000 18 O -0.231 6.231 19 C 0.089 3.911 20 C -0.227 4.227 21 C -0.098 4.098 22 C -0.181 4.181 23 C -0.101 4.101 24 C -0.173 4.173 25 C -0.116 4.116 26 C -0.155 4.155 27 C -0.162 4.162 28 C -0.162 4.162 29 C -0.155 4.155 30 H 0.069 0.931 31 H 0.195 0.805 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.235 0.765 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.083 0.917 51 H 0.078 0.922 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 22.010 1.210 -4.352 22.469 hybrid contribution 0.300 1.086 -0.258 1.155 sum 22.310 2.295 -4.610 22.897 Atomic orbital electron populations 1.69689 1.05032 1.25802 1.57581 1.24621 0.95161 0.97008 1.02011 0.86708 0.79822 0.85316 0.77937 1.21036 1.21549 1.19847 1.19048 0.80608 0.94674 1.43027 0.89171 1.42652 1.03954 1.02167 1.91075 1.21033 0.88118 0.89743 0.99272 1.21563 0.95311 0.89593 0.90669 0.88058 1.45798 1.65541 1.14318 1.10397 1.20154 0.76719 0.82454 0.90018 1.90719 1.51577 1.75706 1.23965 1.21498 1.04841 0.93810 0.98246 1.22455 1.01549 0.88369 0.87672 1.85973 1.79511 1.21824 1.35745 1.19028 0.93905 0.84809 0.93380 1.21409 1.06458 0.99145 0.95652 1.20981 0.96627 0.92755 0.99456 1.21060 1.04090 1.00025 0.92934 1.20953 0.97214 0.95238 0.96744 1.20459 1.05100 0.93216 0.98566 1.22054 0.94805 0.95069 0.99626 1.22403 0.97184 0.97968 0.97943 1.22493 0.95071 0.97542 1.01065 1.22356 0.98176 0.97311 0.98398 1.22162 0.94816 1.00680 0.97860 0.93056 0.80511 0.94299 0.95349 0.76487 0.87769 0.87353 0.90914 0.90973 0.85084 0.85783 0.86011 0.85451 0.85204 0.90632 0.90890 0.91169 0.91749 0.91734 0.92175 0.91707 0.92250 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.67 13.97 55.49 0.78 -28.89 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.87 22.93 27.73 -169.99 -4.71 18.22 16 4 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.27 -7.08 6.52 56.52 0.37 -6.71 16 7 C -0.24 -6.96 10.47 -15.05 -0.16 -7.11 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.99 5.24 -59.91 -0.31 -18.31 16 10 C 0.15 2.71 5.61 -4.04 -0.02 2.69 16 11 C 0.13 1.98 1.70 -67.93 -0.12 1.87 16 12 H 0.10 1.77 6.91 -51.93 -0.36 1.41 16 13 N -0.71 -9.71 4.00 -53.81 -0.22 -9.92 16 14 C 0.52 7.87 7.07 -10.99 -0.08 7.79 16 15 O -0.54 -10.08 15.32 5.56 0.09 -10.00 16 16 C -0.14 -1.78 6.07 -27.88 -0.17 -1.95 16 17 C 0.07 1.00 4.03 37.16 0.15 1.15 16 18 O -0.32 -4.31 10.14 -19.45 -0.20 -4.51 16 19 C 0.13 1.75 6.69 -39.22 -0.26 1.49 16 20 C -0.21 -2.57 9.04 -39.43 -0.36 -2.92 16 21 C -0.08 -0.85 10.04 -39.61 -0.40 -1.25 16 22 C -0.16 -1.56 10.04 -39.56 -0.40 -1.96 16 23 C -0.08 -0.80 10.04 -39.61 -0.40 -1.20 16 24 C -0.15 -1.74 9.99 -39.44 -0.39 -2.14 16 25 C -0.10 -1.10 2.71 -89.50 -0.24 -1.34 16 26 C -0.12 -1.30 5.34 -25.07 -0.13 -1.43 16 27 C -0.12 -1.18 6.91 -24.74 -0.17 -1.35 16 28 C -0.12 -1.24 6.83 -25.07 -0.17 -1.41 16 29 C -0.12 -1.26 6.23 -25.61 -0.16 -1.42 16 30 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 31 H 0.36 8.79 4.67 -40.82 -0.19 8.60 16 32 H 0.04 0.73 7.22 -51.93 -0.38 0.36 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.40 4.43 8.83 -40.82 -0.36 4.07 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.07 1.10 7.61 -51.93 -0.39 0.70 16 38 H 0.07 0.91 7.63 -51.93 -0.40 0.51 16 39 H 0.13 1.59 6.30 -52.49 -0.33 1.26 16 40 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.90 7.58 -51.93 -0.39 0.51 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 52 H 0.07 0.83 7.33 -51.93 -0.38 0.45 16 LS Contribution 415.55 15.07 6.26 6.26 Total: -1.00 -34.63 415.55 -10.58 -45.21 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -8.69 Total: 12.27 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -3.57 Total: -10.33 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.25 Total: -57.13 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.11 Total: -14.50 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.71 Total: 18.22 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.63 -10.58 -45.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500128267.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.724 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds