Wall clock time and date at job start Sat Apr 11 2020 07:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00102 * 2 1 4 4 H 1.48497 * 109.47098 * 272.05580 * 3 2 1 5 5 H 1.48497 * 109.46838 * 32.05576 * 3 2 1 6 6 H 1.48506 * 109.46869 * 152.05410 * 3 2 1 7 7 C 1.38813 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00462 * 342.32450 * 7 2 1 9 9 N 1.36945 * 119.99845 * 162.32999 * 7 2 1 10 10 C 1.46923 * 120.63066 * 149.00424 * 9 7 2 11 11 C 1.53190 * 108.77164 * 126.36878 * 10 9 7 12 12 C 1.53046 * 109.31298 * 54.63729 * 11 10 9 13 13 C 1.53039 * 109.53769 * 298.63315 * 12 11 10 14 14 C 1.52999 * 109.49963 * 181.34955 * 13 12 11 15 15 O 1.42894 * 109.47322 * 175.21960 * 14 13 12 16 16 N 1.46507 * 109.49416 * 301.41673 * 13 12 11 17 17 C 1.34773 * 119.99884 * 301.74212 * 16 13 12 18 18 O 1.21289 * 120.00237 * 354.81248 * 17 16 13 19 19 C 1.50698 * 120.00206 * 174.80789 * 17 16 13 20 20 C 1.53000 * 109.47491 * 180.02562 * 19 17 16 21 21 C 1.52994 * 109.47378 * 180.02562 * 20 19 17 22 22 C 1.50696 * 109.47508 * 180.02562 * 21 20 19 23 23 C 1.38237 * 120.00170 * 269.73162 * 22 21 20 24 24 C 1.38235 * 120.00029 * 179.78535 * 23 22 21 25 25 C 1.38241 * 119.99616 * 0.46136 * 24 23 22 26 26 C 1.38234 * 120.00364 * 359.76861 * 25 24 23 27 27 C 1.38230 * 119.99826 * 0.02562 * 26 25 24 28 28 C 1.46923 * 120.62926 * 328.98592 * 9 7 2 29 29 H 0.96999 * 120.00177 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.58578 * 6.58603 * 10 9 7 31 31 H 1.08992 * 109.70483 * 246.22768 * 10 9 7 32 32 H 1.09002 * 109.50357 * 294.68470 * 11 10 9 33 33 H 1.09008 * 109.50013 * 174.58762 * 11 10 9 34 34 H 1.09002 * 109.45996 * 178.61020 * 12 11 10 35 35 H 1.08998 * 109.45907 * 58.65197 * 12 11 10 36 36 H 1.09002 * 109.46952 * 295.21971 * 14 13 12 37 37 H 1.08998 * 109.46991 * 55.21845 * 14 13 12 38 38 H 0.96701 * 114.00498 * 179.97438 * 15 14 13 39 39 H 0.97001 * 119.99999 * 121.75547 * 16 13 12 40 40 H 1.09001 * 109.46727 * 59.99949 * 19 17 16 41 41 H 1.09003 * 109.47031 * 300.00517 * 19 17 16 42 42 H 1.09003 * 109.47287 * 300.00216 * 20 19 17 43 43 H 1.08999 * 109.46947 * 59.99749 * 20 19 17 44 44 H 1.09003 * 109.47030 * 300.00302 * 21 20 19 45 45 H 1.08999 * 109.47345 * 59.99921 * 21 20 19 46 46 H 1.07991 * 119.99925 * 359.97438 * 23 22 21 47 47 H 1.07992 * 120.00466 * 180.24843 * 24 23 22 48 48 H 1.08009 * 119.99520 * 179.78959 * 25 24 23 49 49 H 1.07996 * 120.00095 * 180.02562 * 26 25 24 50 50 H 1.08005 * 119.99980 * 179.97438 * 27 26 25 51 51 H 1.08996 * 109.59199 * 113.84254 * 28 9 7 52 52 H 1.09005 * 109.58814 * 353.41770 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4542 2.0715 -1.3991 5 1 1.4700 2.6397 0.7431 6 1 3.5688 1.4279 0.6562 7 6 2.0101 -1.2022 0.0005 8 1 1.5084 -2.1153 0.2849 9 7 3.3311 -1.2304 -0.3594 10 6 4.2465 -2.2175 0.2290 11 6 4.9496 -2.9738 -0.9025 12 6 5.6257 -1.9696 -1.8389 13 6 4.5673 -1.0522 -2.4557 14 6 5.2401 -0.0705 -3.4173 15 8 4.2416 0.7109 -4.0761 16 7 3.5872 -1.8591 -3.1871 17 6 3.9903 -2.6608 -4.1926 18 8 5.1479 -2.6444 -4.5545 19 6 3.0029 -3.5776 -4.8675 20 6 3.7127 -4.3725 -5.9653 21 6 2.7100 -5.3028 -6.6508 22 6 3.4092 -6.0862 -7.7316 23 6 3.4671 -5.5873 -9.0195 24 6 4.1123 -6.3038 -10.0100 25 6 4.6915 -7.5238 -9.7147 26 6 4.6295 -8.0250 -8.4279 27 6 3.9880 -7.3064 -7.4365 28 6 3.8598 -0.2742 -1.3417 29 1 -0.4850 0.8400 -0.0004 30 1 3.6815 -2.9198 0.8420 31 1 4.9883 -1.7094 0.8451 32 1 4.2169 -3.5560 -1.4614 33 1 5.7012 -3.6418 -0.4817 34 1 6.1475 -2.5062 -2.6312 35 1 6.3405 -1.3710 -1.2743 36 1 5.9058 0.5871 -2.8582 37 1 5.8155 -0.6249 -4.1587 38 1 4.5970 1.3567 -4.7021 39 1 2.6482 -1.8161 -2.9477 40 1 2.2002 -2.9860 -5.3078 41 1 2.5856 -4.2662 -4.1327 42 1 4.1302 -3.6841 -6.7001 43 1 4.5151 -4.9639 -5.5245 44 1 2.2921 -5.9911 -5.9162 45 1 1.9078 -4.7110 -7.0916 46 1 3.0108 -4.6363 -9.2512 47 1 4.1611 -5.9122 -11.0153 48 1 5.1927 -8.0853 -10.4894 49 1 5.0823 -8.9779 -8.1971 50 1 3.9392 -7.6982 -6.4312 51 1 4.5700 0.3945 -0.8553 52 1 3.0398 0.3058 -1.7652 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501346174.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:11 Heat of formation + Delta-G solvation = -72.213501 kcal Electronic energy + Delta-G solvation = -31357.882691 eV Core-core repulsion = 27321.330409 eV Total energy + Delta-G solvation = -4036.552281 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.50676 -40.16078 -39.15376 -37.48114 -35.87414 -35.34336 -34.23056 -32.70925 -32.30900 -31.73003 -31.31878 -27.80791 -27.26757 -26.85068 -24.18077 -23.98577 -23.42253 -22.29994 -21.68073 -21.31540 -20.17480 -18.97330 -18.27699 -18.17733 -17.53435 -17.13865 -16.87500 -16.53597 -16.09653 -16.02252 -15.67837 -15.45291 -15.30414 -15.12532 -14.95082 -14.56647 -14.33758 -14.32354 -14.18816 -13.99200 -13.79392 -13.70987 -13.45448 -13.24487 -12.89409 -12.76991 -12.72182 -12.45967 -12.39796 -12.20498 -11.94332 -11.89862 -11.76336 -11.72699 -11.52743 -11.47755 -11.32809 -11.07923 -10.72888 -10.34676 -9.80493 -9.78519 -9.55207 -8.86955 -8.15374 -5.50961 0.48743 0.53553 1.34206 1.40394 1.47656 1.81639 2.35463 2.42348 2.92063 3.06605 3.25462 3.35292 3.74749 3.80996 3.95147 3.99077 4.01721 4.18472 4.18859 4.19246 4.24953 4.29193 4.37831 4.42501 4.49427 4.54299 4.54923 4.67882 4.70410 4.72729 4.77264 4.80563 4.81830 4.88608 4.90922 4.93479 5.05713 5.13340 5.14754 5.21193 5.25977 5.26798 5.41093 5.46345 5.61597 5.65845 5.72759 5.78518 5.91056 6.16683 6.17399 6.77201 6.86439 6.92306 7.41125 7.61969 8.04935 9.03663 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.016395 B = 0.002482 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.450378 B =11276.511256 C =11358.247273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.023 4.023 3 Si 0.935 3.065 4 H -0.278 1.278 5 H -0.314 1.314 6 H -0.263 1.263 7 C -0.241 4.241 8 H 0.058 0.942 9 N -0.613 5.613 10 C 0.141 3.859 11 C -0.118 4.118 12 C -0.115 4.115 13 C 0.165 3.835 14 C 0.069 3.931 15 O -0.583 6.583 16 N -0.695 5.695 17 C 0.514 3.486 18 O -0.577 6.577 19 C -0.138 4.138 20 C -0.079 4.079 21 C -0.077 4.077 22 C -0.091 4.091 23 C -0.133 4.133 24 C -0.129 4.129 25 C -0.136 4.136 26 C -0.129 4.129 27 C -0.132 4.132 28 C 0.131 3.869 29 H 0.260 0.740 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.391 0.609 39 H 0.403 0.597 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.128 0.872 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.129 0.871 51 H 0.038 0.962 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.113 -11.045 -16.492 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.219 4.219 3 Si 0.765 3.235 4 H -0.205 1.205 5 H -0.244 1.244 6 H -0.188 1.188 7 C -0.370 4.370 8 H 0.076 0.924 9 N -0.337 5.337 10 C 0.017 3.983 11 C -0.157 4.157 12 C -0.154 4.154 13 C 0.077 3.923 14 C -0.011 4.011 15 O -0.390 6.390 16 N -0.344 5.344 17 C 0.302 3.698 18 O -0.459 6.459 19 C -0.177 4.177 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.091 4.091 23 C -0.151 4.151 24 C -0.147 4.147 25 C -0.154 4.154 26 C -0.146 4.146 27 C -0.150 4.150 28 C 0.005 3.995 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.239 0.761 39 H 0.237 0.763 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.146 0.854 47 H 0.155 0.845 48 H 0.157 0.843 49 H 0.156 0.844 50 H 0.147 0.853 51 H 0.056 0.944 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.399 -11.325 -16.312 22.897 hybrid contribution -0.161 1.570 0.105 1.582 sum 11.238 -9.755 -16.207 22.003 Atomic orbital electron populations 1.69905 1.07112 1.26986 1.55626 1.25864 0.95692 1.00317 1.00017 0.86081 0.78773 0.81242 0.77437 1.20459 1.24357 1.18779 1.18771 0.84984 0.93031 1.40225 0.92434 1.44416 1.06189 1.37746 1.45345 1.21156 0.92040 0.91036 0.94085 1.21804 0.99372 0.97533 0.96966 1.21712 0.96745 0.97802 0.99120 1.20863 0.89800 0.90823 0.90856 1.22607 0.90215 0.92766 0.95468 1.86501 1.36257 1.54898 1.61320 1.45906 1.11339 1.43259 1.33930 1.21035 0.89450 0.80237 0.79035 1.90556 1.20597 1.69666 1.65036 1.21713 0.98178 0.98411 0.99419 1.21107 0.97385 0.97163 0.96087 1.20621 0.97228 0.97652 0.95958 1.20084 0.98671 0.95333 0.95044 1.21314 1.00333 1.00471 0.92971 1.21445 0.97857 0.95373 0.99997 1.21460 1.00161 0.96502 0.97282 1.21445 0.99201 1.00614 0.93383 1.21319 0.98631 0.94971 1.00115 1.21499 0.97037 0.91899 0.89076 0.93060 0.92298 0.94736 0.93104 0.89884 0.90619 0.90557 0.92284 0.91721 0.76080 0.76252 0.87929 0.87774 0.92671 0.92505 0.89954 0.90003 0.85389 0.84463 0.84274 0.84439 0.85335 0.94413 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.72 13.97 21.65 0.30 -57.42 16 2 C -0.02 -1.31 5.26 84.86 0.45 -0.87 16 3 Si 0.93 46.06 24.35 68.60 1.67 47.73 16 4 H -0.28 -13.40 6.66 99.48 0.66 -12.74 16 5 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 6 H -0.26 -12.42 6.59 99.48 0.66 -11.76 16 7 C -0.24 -12.84 10.02 84.03 0.84 -12.00 16 8 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 9 N -0.61 -27.13 2.64 -699.12 -1.84 -28.97 16 10 C 0.14 5.17 6.52 86.36 0.56 5.73 16 11 C -0.12 -3.64 5.93 30.67 0.18 -3.46 16 12 C -0.12 -3.57 4.45 30.62 0.14 -3.43 16 13 C 0.17 5.70 0.45 3.68 0.00 5.71 16 14 C 0.07 2.14 5.67 71.98 0.41 2.54 16 15 O -0.58 -18.62 13.07 -148.98 -1.95 -20.57 16 16 N -0.70 -23.78 3.95 -422.56 -1.67 -25.45 16 17 C 0.51 16.01 7.20 87.66 0.63 16.64 16 18 O -0.58 -20.08 12.29 -3.06 -0.04 -20.12 16 19 C -0.14 -3.28 5.70 29.85 0.17 -3.10 16 20 C -0.08 -1.77 4.49 30.59 0.14 -1.64 16 21 C -0.08 -1.40 5.35 29.84 0.16 -1.24 16 22 C -0.09 -1.79 5.13 -19.86 -0.10 -1.90 16 23 C -0.13 -2.49 9.70 22.27 0.22 -2.28 16 24 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 25 C -0.14 -2.16 10.05 22.27 0.22 -1.93 16 26 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 27 C -0.13 -2.48 9.70 22.27 0.22 -2.26 16 28 C 0.13 5.40 2.73 86.36 0.24 5.64 16 29 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.06 2.18 7.93 -2.39 -0.02 2.17 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.68 7.49 -2.39 -0.02 1.66 16 33 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.08 2.41 6.27 -2.39 -0.01 2.39 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 2.05 6.28 -2.39 -0.02 2.04 16 38 H 0.39 8.47 9.12 -74.06 -0.68 7.79 16 39 H 0.40 15.10 8.47 -92.71 -0.79 14.32 16 40 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 43 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 44 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 45 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 46 H 0.13 2.09 8.06 -2.92 -0.02 2.07 16 47 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 48 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 49 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 50 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 51 H 0.04 1.55 6.97 -2.39 -0.02 1.54 16 52 H 0.06 2.80 4.60 -2.38 -0.01 2.78 16 Total: -1.00 -68.66 404.08 0.75 -67.90 By element: Atomic # 1 Polarization: 39.21 SS G_CDS: -0.64 Total: 38.58 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 4.91 Total: -1.69 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -3.21 Total: -111.84 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.98 Total: -40.69 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.73 kcal Total: -68.66 0.75 -67.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501346174.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.309 kcal (2) G-P(sol) polarization free energy of solvation -68.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds