Wall clock time and date at job start Sat Apr 11 2020 07:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47179 * 2 1 4 4 C 1.50699 * 109.46999 * 120.00230 * 2 1 3 5 5 N 1.30296 * 126.34811 * 299.95587 * 4 2 1 6 6 N 1.28530 * 110.05220 * 180.02562 * 5 4 2 7 7 C 1.31217 * 109.86105 * 359.74440 * 6 5 4 8 8 N 1.38574 * 126.47386 * 180.25996 * 7 6 5 9 9 C 1.46901 * 110.99986 * 260.80273 * 8 7 6 10 10 C 1.46900 * 111.00206 * 24.75276 * 8 7 6 11 11 H 1.09003 * 109.47211 * 300.00295 * 10 8 7 12 12 C 1.53001 * 109.47014 * 60.00119 * 10 8 7 13 13 C 1.50697 * 109.47509 * 180.02562 * 10 8 7 14 14 H 1.08000 * 119.99520 * 359.97438 * 13 10 8 15 15 C 1.37873 * 119.99914 * 180.02562 * 13 10 8 16 16 N 1.31525 * 119.99818 * 179.97438 * 15 13 10 17 17 Si 1.86799 * 120.00418 * 359.97438 * 15 13 10 18 18 H 1.48493 * 109.47011 * 90.00355 * 17 15 13 19 19 H 1.48495 * 109.47233 * 210.00223 * 17 15 13 20 20 H 1.48501 * 109.46690 * 330.00295 * 17 15 13 21 21 N 1.36457 * 107.05143 * 0.40075 * 7 6 5 22 22 C 1.46498 * 127.13359 * 179.87370 * 21 7 6 23 23 C 1.53000 * 109.47026 * 263.96726 * 22 21 7 24 24 O 1.42908 * 109.46974 * 174.98518 * 23 22 21 25 25 C 1.42904 * 113.99944 * 179.97438 * 24 23 22 26 26 C 1.52998 * 109.46779 * 180.02562 * 25 24 23 27 27 F 1.39895 * 109.47193 * 299.99730 * 26 25 24 28 28 F 1.39892 * 109.47391 * 60.00331 * 26 25 24 29 29 H 1.08998 * 109.47380 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46997 * 300.00037 * 1 2 3 31 31 H 1.08999 * 109.46986 * 59.99878 * 1 2 3 32 32 H 1.08994 * 109.46703 * 240.00256 * 2 1 3 33 33 H 1.08995 * 109.47075 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47057 * 300.00467 * 3 2 1 35 35 H 1.09000 * 109.46783 * 60.00178 * 3 2 1 36 36 H 1.08998 * 109.47054 * 54.85278 * 9 8 7 37 37 H 1.08996 * 109.47645 * 174.85668 * 9 8 7 38 38 H 1.09007 * 109.47149 * 294.85480 * 9 8 7 39 39 H 1.08998 * 109.47335 * 179.97438 * 12 10 8 40 40 H 1.09005 * 109.47166 * 299.99947 * 12 10 8 41 41 H 1.09003 * 109.46988 * 60.00040 * 12 10 8 42 42 H 0.96996 * 120.00238 * 179.97438 * 16 15 13 43 43 H 1.08999 * 109.46990 * 143.96691 * 22 21 7 44 44 H 1.09005 * 109.47320 * 23.96197 * 22 21 7 45 45 H 1.08998 * 109.47185 * 54.98918 * 23 22 21 46 46 H 1.09004 * 109.47024 * 294.98381 * 23 22 21 47 47 H 1.09000 * 109.47073 * 300.00003 * 25 24 23 48 48 H 1.08998 * 109.46785 * 60.00203 * 25 24 23 49 49 H 1.09002 * 109.46811 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7957 -0.3744 2.4669 6 7 2.3771 -1.1963 3.2659 7 6 3.0167 -2.1114 2.5764 8 7 3.7538 -3.1657 3.0916 9 6 5.1901 -2.8573 3.0836 10 6 3.2981 -3.5156 4.4436 11 1 3.4144 -2.6537 5.1007 12 6 1.8246 -3.9247 4.3952 13 6 4.1214 -4.6628 4.9701 14 1 4.9045 -5.0895 4.3610 15 6 3.8741 -5.1681 6.2288 16 7 4.5923 -6.1697 6.6881 17 14 2.5191 -4.4305 7.2819 18 1 1.2431 -5.1422 7.0167 19 1 2.8752 -4.5710 8.7167 20 1 2.3617 -2.9917 6.9495 21 7 2.8214 -1.8269 1.2562 22 6 3.3436 -2.5676 0.1052 23 6 4.6323 -1.9049 -0.3857 24 8 5.2041 -2.6923 -1.4323 25 6 6.4179 -2.1582 -1.9646 26 6 6.9370 -3.0773 -3.0721 27 9 7.1791 -4.3508 -2.5460 28 9 5.9813 -3.1671 -4.0898 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 5.3637 -1.9215 3.6148 37 1 5.7371 -3.6614 3.5758 38 1 5.5351 -2.7602 2.0542 39 1 1.4866 -4.1848 5.3982 40 1 1.2293 -3.0947 4.0146 41 1 1.7083 -4.7866 3.7381 42 1 4.4187 -6.5250 7.5737 43 1 2.6044 -2.5626 -0.6958 44 1 3.5533 -3.5960 0.3997 45 1 5.3396 -1.8297 0.4402 46 1 4.4069 -0.9074 -0.7632 47 1 6.2292 -1.1661 -2.3749 48 1 7.1624 -2.0878 -1.1716 49 1 7.8631 -2.6702 -3.4779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508914022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:33 Heat of formation + Delta-G solvation = -51.939390 kcal Electronic energy + Delta-G solvation = -32169.797940 eV Core-core repulsion = 27612.188032 eV Total energy + Delta-G solvation = -4557.609909 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.20989 -47.24393 -42.75073 -38.58673 -37.47839 -35.70599 -34.96290 -32.72685 -31.06974 -30.28227 -29.00080 -28.85603 -27.33744 -25.57011 -24.53268 -23.96346 -23.35688 -23.24098 -21.61980 -20.01107 -19.19763 -18.31408 -17.82090 -17.39799 -16.99596 -16.68550 -16.36834 -16.12912 -15.88997 -15.34956 -15.16205 -14.72426 -14.29338 -14.22204 -14.20436 -13.87088 -13.75106 -13.58533 -13.28584 -13.20463 -12.86360 -12.71586 -12.32066 -12.22824 -12.10042 -12.01764 -11.84202 -11.78512 -11.41448 -11.38618 -11.22386 -11.12243 -11.09907 -10.76212 -10.67894 -10.24335 -10.21471 -10.06359 -9.98087 -9.51960 -9.36411 -8.77851 -8.61675 -7.73207 -6.13745 -4.14972 1.96366 2.23331 3.02535 3.18962 3.29387 3.40387 3.46742 3.48848 3.78588 4.06074 4.24511 4.31458 4.38319 4.39395 4.47104 4.60329 4.72060 4.74378 4.84992 4.92381 4.96661 5.08566 5.11275 5.19604 5.42558 5.46155 5.49609 5.52943 5.67223 5.67952 5.78203 5.92756 5.99765 6.06834 6.18516 6.21827 6.40600 6.44240 6.46728 6.48641 6.63841 6.84033 6.94732 7.13900 7.44058 7.61895 7.89336 8.49220 8.86549 9.13060 9.46732 10.97815 Molecular weight = 346.19amu Principal moments of inertia in cm(-1) A = 0.008878 B = 0.003690 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.117699 B = 7585.618639 C =10212.724835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.000 4.000 3 C -0.139 4.139 4 C 0.161 3.839 5 N -0.280 5.280 6 N -0.319 5.319 7 C 0.381 3.619 8 N -0.453 5.453 9 C 0.039 3.961 10 C 0.199 3.801 11 H 0.025 0.975 12 C -0.146 4.146 13 C -0.517 4.517 14 H 0.086 0.914 15 C 0.079 3.921 16 N -0.894 5.894 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.295 1.295 20 H -0.261 1.261 21 N -0.476 5.476 22 C 0.115 3.885 23 C 0.050 3.950 24 O -0.369 6.369 25 C 0.010 3.990 26 C 0.272 3.728 27 F -0.196 7.196 28 F -0.200 7.200 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.107 0.893 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.037 0.963 41 H 0.054 0.946 42 H 0.266 0.734 43 H 0.099 0.901 44 H 0.117 0.883 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.169 12.744 -21.962 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 C -0.198 4.198 4 C -0.106 4.106 5 N -0.119 5.119 6 N -0.163 5.163 7 C 0.026 3.974 8 N -0.178 5.178 9 C -0.108 4.108 10 C 0.094 3.906 11 H 0.043 0.957 12 C -0.204 4.204 13 C -0.555 4.555 14 H 0.104 0.896 15 C -0.125 4.125 16 N -0.531 5.531 17 Si 0.710 3.290 18 H -0.204 1.204 19 H -0.223 1.223 20 H -0.185 1.185 21 N -0.173 5.173 22 C -0.010 4.010 23 C -0.028 4.028 24 O -0.287 6.287 25 C -0.068 4.068 26 C 0.218 3.782 27 F -0.177 7.177 28 F -0.182 7.182 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.125 0.875 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.118 0.882 44 H 0.135 0.865 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.099 0.901 48 H 0.102 0.898 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.525 12.735 -20.960 24.572 hybrid contribution -0.006 0.087 0.064 0.108 sum 1.519 12.822 -20.895 24.563 Atomic orbital electron populations 1.21799 0.92855 1.02453 1.02800 1.19482 0.96752 0.95421 0.90443 1.21794 1.00830 0.94242 1.02894 1.24586 0.98527 0.89742 0.97777 1.73911 1.19318 1.21145 0.97575 1.74791 1.14752 1.02285 1.24465 1.23035 0.99935 0.93584 0.80892 1.58878 1.03222 1.27551 1.28115 1.22453 0.86197 1.02041 1.00146 1.19742 0.92886 0.96910 0.81102 0.95734 1.22160 0.97561 1.00188 1.00477 1.20865 1.18400 1.15318 1.00929 0.89644 1.24812 0.95987 0.94392 0.97263 1.69862 1.40001 1.24782 1.18488 0.86949 0.82163 0.80992 0.78917 1.20420 1.22294 1.18529 1.46101 1.40099 1.24308 1.06793 1.21452 0.94842 0.97604 0.87060 1.22880 0.95323 0.94233 0.90355 1.87906 1.38261 1.49534 1.52997 1.23712 0.88995 0.97296 0.96758 1.21994 0.91053 0.81223 0.83893 1.93044 1.94795 1.42838 1.87054 1.93011 1.67349 1.96495 1.61304 0.92550 0.91198 0.91733 0.90106 0.92933 0.91721 0.91153 0.95271 0.87483 0.93322 0.93434 0.94450 0.92699 0.92390 0.88236 0.86463 0.91807 0.92367 0.90086 0.89794 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.18 37.16 0.34 -1.01 16 2 C 0.00 0.00 3.30 -91.77 -0.30 -0.30 16 3 C -0.14 -1.24 9.18 37.16 0.34 -0.90 16 4 C 0.16 2.40 6.58 -154.02 -1.01 1.39 16 5 N -0.28 -5.27 12.18 32.99 0.40 -4.87 16 6 N -0.32 -6.85 10.28 30.31 0.31 -6.54 16 7 C 0.38 7.44 5.91 -318.88 -1.88 5.55 16 8 N -0.45 -9.43 4.62 -176.08 -0.81 -10.24 16 9 C 0.04 0.71 9.36 60.07 0.56 1.27 16 10 C 0.20 4.85 1.33 -68.87 -0.09 4.76 16 11 H 0.02 0.65 6.95 -51.93 -0.36 0.29 16 12 C -0.15 -3.48 8.51 37.16 0.32 -3.17 16 13 C -0.52 -14.08 8.39 -34.44 -0.29 -14.37 16 14 H 0.09 2.45 6.69 -52.49 -0.35 2.10 16 15 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 16 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 17 Si 0.88 22.24 24.37 -169.99 -4.14 18.10 16 18 H -0.28 -6.88 6.87 56.52 0.39 -6.49 16 19 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.26 -6.57 6.53 56.52 0.37 -6.20 16 21 N -0.48 -7.34 2.81 -114.09 -0.32 -7.66 16 22 C 0.11 1.38 6.15 -4.04 -0.02 1.35 16 23 C 0.05 0.50 6.25 37.16 0.23 0.73 16 24 O -0.37 -3.83 10.23 -35.23 -0.36 -4.19 16 25 C 0.01 0.07 6.16 37.16 0.23 0.30 16 26 C 0.27 1.88 5.63 37.16 0.21 2.09 16 27 F -0.20 -2.07 17.28 2.25 0.04 -2.03 16 28 F -0.20 -1.90 17.28 2.25 0.04 -1.86 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.68 7.09 -51.93 -0.37 0.31 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.03 0.53 8.11 -51.93 -0.42 0.11 16 37 H 0.11 2.13 5.95 -51.93 -0.31 1.82 16 38 H 0.05 0.73 6.15 -51.93 -0.32 0.42 16 39 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 40 H 0.04 0.86 6.40 -51.93 -0.33 0.53 16 41 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.10 0.99 7.49 -51.93 -0.39 0.60 16 44 H 0.12 1.60 8.09 -51.93 -0.42 1.18 16 45 H 0.06 0.69 6.16 -51.93 -0.32 0.37 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 395.09 15.07 5.95 5.95 Total: -1.00 -34.40 395.09 -7.18 -41.58 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -7.59 Total: -2.19 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.47 Total: -0.16 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.35 Total: -55.20 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.36 Total: -4.19 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.08 Total: -3.89 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.10 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.40 -7.18 -41.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508914022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.356 kcal (2) G-P(sol) polarization free energy of solvation -34.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds