Wall clock time and date at job start Sat Apr 11 2020 07:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47179 * 2 1 4 4 C 1.50699 * 109.46999 * 120.00230 * 2 1 3 5 5 N 1.30296 * 126.34811 * 299.95587 * 4 2 1 6 6 N 1.28530 * 110.05220 * 180.02562 * 5 4 2 7 7 C 1.31217 * 109.86105 * 359.74440 * 6 5 4 8 8 N 1.38574 * 126.47386 * 180.25996 * 7 6 5 9 9 C 1.46901 * 110.99986 * 260.80273 * 8 7 6 10 10 C 1.46900 * 111.00206 * 24.75276 * 8 7 6 11 11 H 1.09003 * 109.47211 * 300.00295 * 10 8 7 12 12 C 1.53001 * 109.47014 * 60.00119 * 10 8 7 13 13 C 1.50697 * 109.47509 * 180.02562 * 10 8 7 14 14 H 1.08000 * 119.99520 * 359.97438 * 13 10 8 15 15 C 1.37873 * 119.99914 * 180.02562 * 13 10 8 16 16 N 1.31525 * 119.99818 * 179.97438 * 15 13 10 17 17 Si 1.86799 * 120.00418 * 359.97438 * 15 13 10 18 18 H 1.48493 * 109.47011 * 90.00355 * 17 15 13 19 19 H 1.48495 * 109.47233 * 210.00223 * 17 15 13 20 20 H 1.48501 * 109.46690 * 330.00295 * 17 15 13 21 21 N 1.36457 * 107.05143 * 0.40075 * 7 6 5 22 22 C 1.46498 * 127.13359 * 179.87370 * 21 7 6 23 23 C 1.53000 * 109.47026 * 263.96726 * 22 21 7 24 24 O 1.42908 * 109.46974 * 174.98518 * 23 22 21 25 25 C 1.42904 * 113.99944 * 179.97438 * 24 23 22 26 26 C 1.52998 * 109.46779 * 180.02562 * 25 24 23 27 27 F 1.39895 * 109.47193 * 299.99730 * 26 25 24 28 28 F 1.39892 * 109.47391 * 60.00331 * 26 25 24 29 29 H 1.08998 * 109.47380 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46997 * 300.00037 * 1 2 3 31 31 H 1.08999 * 109.46986 * 59.99878 * 1 2 3 32 32 H 1.08994 * 109.46703 * 240.00256 * 2 1 3 33 33 H 1.08995 * 109.47075 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47057 * 300.00467 * 3 2 1 35 35 H 1.09000 * 109.46783 * 60.00178 * 3 2 1 36 36 H 1.08998 * 109.47054 * 54.85278 * 9 8 7 37 37 H 1.08996 * 109.47645 * 174.85668 * 9 8 7 38 38 H 1.09007 * 109.47149 * 294.85480 * 9 8 7 39 39 H 1.08998 * 109.47335 * 179.97438 * 12 10 8 40 40 H 1.09005 * 109.47166 * 299.99947 * 12 10 8 41 41 H 1.09003 * 109.46988 * 60.00040 * 12 10 8 42 42 H 0.96996 * 120.00238 * 179.97438 * 16 15 13 43 43 H 1.08999 * 109.46990 * 143.96691 * 22 21 7 44 44 H 1.09005 * 109.47320 * 23.96197 * 22 21 7 45 45 H 1.08998 * 109.47185 * 54.98918 * 23 22 21 46 46 H 1.09004 * 109.47024 * 294.98381 * 23 22 21 47 47 H 1.09000 * 109.47073 * 300.00003 * 25 24 23 48 48 H 1.08998 * 109.46785 * 60.00203 * 25 24 23 49 49 H 1.09002 * 109.46811 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7957 -0.3744 2.4669 6 7 2.3771 -1.1963 3.2659 7 6 3.0167 -2.1114 2.5764 8 7 3.7538 -3.1657 3.0916 9 6 5.1901 -2.8573 3.0836 10 6 3.2981 -3.5156 4.4436 11 1 3.4144 -2.6537 5.1007 12 6 1.8246 -3.9247 4.3952 13 6 4.1214 -4.6628 4.9701 14 1 4.9045 -5.0895 4.3610 15 6 3.8741 -5.1681 6.2288 16 7 4.5923 -6.1697 6.6881 17 14 2.5191 -4.4305 7.2819 18 1 1.2431 -5.1422 7.0167 19 1 2.8752 -4.5710 8.7167 20 1 2.3617 -2.9917 6.9495 21 7 2.8214 -1.8269 1.2562 22 6 3.3436 -2.5676 0.1052 23 6 4.6323 -1.9049 -0.3857 24 8 5.2041 -2.6923 -1.4323 25 6 6.4179 -2.1582 -1.9646 26 6 6.9370 -3.0773 -3.0721 27 9 7.1791 -4.3508 -2.5460 28 9 5.9813 -3.1671 -4.0898 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 5.3637 -1.9215 3.6148 37 1 5.7371 -3.6614 3.5758 38 1 5.5351 -2.7602 2.0542 39 1 1.4866 -4.1848 5.3982 40 1 1.2293 -3.0947 4.0146 41 1 1.7083 -4.7866 3.7381 42 1 4.4187 -6.5250 7.5737 43 1 2.6044 -2.5626 -0.6958 44 1 3.5533 -3.5960 0.3997 45 1 5.3396 -1.8297 0.4402 46 1 4.4069 -0.9074 -0.7632 47 1 6.2292 -1.1661 -2.3749 48 1 7.1624 -2.0878 -1.1716 49 1 7.8631 -2.6702 -3.4779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508914022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:31 Heat of formation + Delta-G solvation = -73.941627 kcal Electronic energy + Delta-G solvation = -32170.752029 eV Core-core repulsion = 27612.188032 eV Total energy + Delta-G solvation = -4558.563997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.192 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.82551 -47.88896 -44.09200 -39.30731 -39.13412 -36.71828 -36.05935 -34.74811 -32.26149 -31.75460 -30.37935 -29.70053 -28.04210 -27.42002 -26.27697 -24.95910 -24.41066 -23.86859 -23.18470 -21.31287 -20.55522 -19.12289 -18.82940 -18.42335 -18.14487 -17.77738 -17.37080 -17.12340 -17.03366 -16.67858 -16.61026 -15.99551 -15.67845 -15.18650 -15.11718 -14.96774 -14.89329 -14.60351 -14.36753 -14.25404 -14.22122 -13.93318 -13.67315 -13.52462 -13.11303 -12.98601 -12.91060 -12.82540 -12.78880 -12.61820 -12.47002 -12.36210 -12.18382 -12.15030 -12.04260 -11.86149 -11.55787 -11.50666 -11.26579 -11.17717 -10.87543 -10.79778 -10.37447 -9.31827 -8.34942 -6.38632 0.70090 1.08146 1.25889 1.33491 1.43853 1.80349 2.26729 2.27013 2.83763 2.97813 3.01874 3.29835 3.39142 3.50049 3.59692 3.69824 3.78337 3.89508 4.07487 4.15380 4.15995 4.25568 4.26946 4.31362 4.34188 4.39141 4.46173 4.50748 4.52591 4.59910 4.63590 4.69533 4.83437 4.89448 4.95453 4.96231 4.99890 5.03191 5.06672 5.22569 5.35868 5.40938 5.44107 5.65244 5.77348 5.82910 6.12766 6.50557 6.65206 7.25593 7.75676 8.79800 Molecular weight = 346.19amu Principal moments of inertia in cm(-1) A = 0.008878 B = 0.003690 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.117699 B = 7585.618639 C =10212.724835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.001 4.001 3 C -0.136 4.136 4 C 0.188 3.812 5 N -0.318 5.318 6 N -0.359 5.359 7 C 0.363 3.637 8 N -0.455 5.455 9 C 0.044 3.956 10 C 0.209 3.791 11 H 0.003 0.997 12 C -0.136 4.136 13 C -0.511 4.511 14 H 0.062 0.938 15 C 0.033 3.967 16 N -0.933 5.933 17 Si 0.930 3.070 18 H -0.267 1.267 19 H -0.290 1.290 20 H -0.263 1.263 21 N -0.468 5.468 22 C 0.108 3.892 23 C 0.060 3.940 24 O -0.393 6.393 25 C 0.002 3.998 26 C 0.261 3.739 27 F -0.222 7.222 28 F -0.217 7.217 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.024 0.976 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.055 0.945 42 H 0.269 0.731 43 H 0.127 0.873 44 H 0.098 0.902 45 H 0.052 0.948 46 H 0.084 0.916 47 H 0.111 0.889 48 H 0.096 0.904 49 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.704 14.760 -24.973 29.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 C -0.194 4.194 4 C -0.080 4.080 5 N -0.157 5.157 6 N -0.203 5.203 7 C 0.005 3.995 8 N -0.180 5.180 9 C -0.103 4.103 10 C 0.102 3.898 11 H 0.021 0.979 12 C -0.194 4.194 13 C -0.549 4.549 14 H 0.080 0.920 15 C -0.166 4.166 16 N -0.572 5.572 17 Si 0.758 3.242 18 H -0.193 1.193 19 H -0.218 1.218 20 H -0.188 1.188 21 N -0.163 5.163 22 C -0.015 4.015 23 C -0.018 4.018 24 O -0.311 6.311 25 C -0.075 4.075 26 C 0.208 3.792 27 F -0.204 7.204 28 F -0.199 7.199 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.145 0.855 44 H 0.116 0.884 45 H 0.070 0.930 46 H 0.102 0.898 47 H 0.129 0.871 48 H 0.114 0.886 49 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.063 14.760 -24.003 28.198 hybrid contribution 0.188 -0.473 0.818 0.964 sum 1.251 14.286 -23.185 27.262 Atomic orbital electron populations 1.21802 0.92198 1.02137 1.03552 1.19871 0.97194 0.96112 0.89036 1.21787 1.00969 0.93062 1.03546 1.25592 0.95761 0.88396 0.98262 1.73842 1.20944 1.21795 0.99078 1.74669 1.15750 1.03402 1.26453 1.22768 1.00626 0.93557 0.82503 1.58764 1.04269 1.28986 1.25973 1.22420 0.85070 1.00752 1.02023 1.19390 0.92834 0.94782 0.82817 0.97928 1.22023 0.97084 1.00267 1.00026 1.21028 1.17820 1.15493 1.00585 0.91971 1.25448 0.97898 0.94787 0.98506 1.69959 1.41758 1.26345 1.19172 0.86125 0.80245 0.80137 0.77651 1.19320 1.21751 1.18769 1.46208 1.39680 1.24285 1.06145 1.21707 0.96923 0.96463 0.86364 1.22708 0.93847 0.94931 0.90278 1.87873 1.39835 1.50518 1.52911 1.24028 0.87928 0.98466 0.97068 1.22702 0.92608 0.80091 0.83767 1.92989 1.94969 1.44924 1.87498 1.92971 1.68342 1.96506 1.62037 0.93411 0.93106 0.88363 0.87021 0.92720 0.88450 0.93152 0.95759 0.89606 0.89889 0.94123 0.94001 0.92606 0.92151 0.85469 0.88409 0.92971 0.89832 0.87088 0.88635 0.80828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.18 71.98 0.66 -1.57 16 2 C 0.00 -0.02 3.30 -11.54 -0.04 -0.06 16 3 C -0.14 -1.91 9.18 71.98 0.66 -1.25 16 4 C 0.19 5.26 6.58 137.64 0.91 6.17 16 5 N -0.32 -11.84 12.18 -49.54 -0.60 -12.45 16 6 N -0.36 -15.53 10.28 -58.01 -0.60 -16.13 16 7 C 0.36 14.12 5.91 260.11 1.54 15.65 16 8 N -0.46 -19.25 4.62 -711.00 -3.28 -22.53 16 9 C 0.04 1.65 9.36 127.69 1.19 2.84 16 10 C 0.21 10.39 1.33 44.17 0.06 10.44 16 11 H 0.00 0.16 6.95 -2.39 -0.02 0.15 16 12 C -0.14 -6.54 8.51 71.98 0.61 -5.93 16 13 C -0.51 -28.65 8.39 25.60 0.21 -28.44 16 14 H 0.06 3.72 6.69 -2.91 -0.02 3.70 16 15 C 0.03 1.91 5.45 84.65 0.46 2.37 16 16 N -0.93 -56.92 13.96 21.45 0.30 -56.62 16 17 Si 0.93 46.50 24.37 68.60 1.67 48.17 16 18 H -0.27 -12.82 6.87 99.48 0.68 -12.14 16 19 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 20 H -0.26 -13.16 6.53 99.48 0.65 -12.51 16 21 N -0.47 -13.68 2.81 -514.86 -1.45 -15.13 16 22 C 0.11 2.36 6.15 86.38 0.53 2.89 16 23 C 0.06 1.03 6.25 71.98 0.45 1.48 16 24 O -0.39 -7.13 10.23 -148.98 -1.52 -8.65 16 25 C 0.00 0.02 6.16 71.98 0.44 0.47 16 26 C 0.26 2.95 5.63 71.98 0.41 3.35 16 27 F -0.22 -4.46 17.28 44.97 0.78 -3.68 16 28 F -0.22 -3.67 17.28 44.97 0.78 -2.89 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.11 1.26 7.09 -2.39 -0.02 1.24 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.02 0.91 8.11 -2.39 -0.02 0.89 16 37 H 0.09 3.56 5.95 -2.39 -0.01 3.55 16 38 H 0.08 2.48 6.15 -2.38 -0.01 2.46 16 39 H 0.04 1.98 3.27 -2.39 -0.01 1.97 16 40 H 0.04 1.94 6.40 -2.38 -0.02 1.93 16 41 H 0.05 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.13 2.07 7.49 -2.39 -0.02 2.05 16 44 H 0.10 2.58 8.09 -2.38 -0.02 2.56 16 45 H 0.05 1.01 6.16 -2.39 -0.01 1.00 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.18 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -78.35 395.09 5.05 -73.30 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 0.88 Total: 8.19 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 8.10 Total: 8.43 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -5.63 Total: -122.86 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -1.52 Total: -8.65 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 1.55 Total: -6.57 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.67 Total: 48.17 kcal Total: -78.35 5.05 -73.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508914022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.645 kcal (2) G-P(sol) polarization free energy of solvation -78.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds