Wall clock time and date at job start Sat Apr 11 2020 07:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00003 * 2 1 4 4 H 1.48502 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47001 * 300.00473 * 3 2 1 6 6 H 1.48506 * 109.46992 * 60.00325 * 3 2 1 7 7 C 1.37878 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99921 * 186.10369 * 7 2 1 9 9 C 1.50692 * 119.99925 * 6.38767 * 7 2 1 10 10 H 1.09005 * 109.47128 * 184.34224 * 9 7 2 11 11 C 1.50692 * 109.47178 * 304.33840 * 9 7 2 12 12 O 1.21291 * 120.00247 * 119.99939 * 11 9 7 13 13 N 1.34777 * 120.00414 * 300.00482 * 11 9 7 14 14 C 1.46503 * 120.00592 * 180.02562 * 13 11 9 15 15 C 1.52995 * 109.47173 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.46775 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.47027 * 179.97438 * 16 15 14 18 18 N 1.46896 * 109.47194 * 179.97438 * 17 16 15 19 19 C 1.47017 * 111.00125 * 293.64017 * 18 17 16 20 20 C 1.53101 * 109.25636 * 177.60859 * 19 18 17 21 21 O 1.43010 * 109.26271 * 56.84519 * 20 19 18 22 22 C 1.43020 * 113.73962 * 301.33439 * 21 20 19 23 23 C 1.47014 * 111.00286 * 170.00434 * 18 17 16 24 24 C 1.50703 * 109.47243 * 64.34072 * 9 7 2 25 25 C 1.38240 * 119.99704 * 193.10945 * 24 9 7 26 26 C 1.38241 * 119.99504 * 179.80760 * 25 24 9 27 27 C 1.38230 * 120.00041 * 0.40109 * 26 25 24 28 28 C 1.38241 * 119.99902 * 359.85802 * 27 26 25 29 29 C 1.38222 * 120.00123 * 359.95141 * 28 27 26 30 30 H 0.96997 * 119.99941 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99844 * 359.97438 * 13 11 9 32 32 H 1.09005 * 109.46591 * 299.99658 * 14 13 11 33 33 H 1.08998 * 109.47094 * 59.99016 * 14 13 11 34 34 H 1.08995 * 109.47004 * 299.99319 * 15 14 13 35 35 H 1.08999 * 109.47496 * 59.99990 * 15 14 13 36 36 H 1.08995 * 109.47098 * 299.99629 * 16 15 14 37 37 H 1.08998 * 109.47308 * 60.00130 * 16 15 14 38 38 H 1.08993 * 109.47465 * 300.00490 * 17 16 15 39 39 H 1.09008 * 109.46557 * 60.00094 * 17 16 15 40 40 H 1.08994 * 109.50642 * 297.53980 * 19 18 17 41 41 H 1.08992 * 109.50772 * 57.67088 * 19 18 17 42 42 H 1.09000 * 109.50481 * 296.91191 * 20 19 18 43 43 H 1.09004 * 109.54226 * 176.80377 * 20 19 18 44 44 H 1.08996 * 109.50320 * 298.73219 * 22 21 20 45 45 H 1.09003 * 109.54096 * 178.62294 * 22 21 20 46 46 H 1.09003 * 109.50013 * 302.33017 * 23 18 17 47 47 H 1.09000 * 109.50671 * 62.41208 * 23 18 17 48 48 H 1.07996 * 120.00455 * 0.02562 * 25 24 9 49 49 H 1.07996 * 119.99510 * 180.22987 * 26 25 24 50 50 H 1.08003 * 119.99824 * 179.82874 * 27 26 25 51 51 H 1.08005 * 119.99490 * 179.97438 * 28 27 26 52 52 H 1.08003 * 119.99928 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0799 -1.1967 0.0989 9 6 1.2581 -2.4950 -0.1463 10 1 1.9553 -3.3270 -0.0474 11 6 0.2043 -2.5924 0.9265 12 8 -0.9649 -2.6950 0.6207 13 7 0.5610 -2.5655 2.2260 14 6 -0.4634 -2.6608 3.2690 15 6 0.2033 -2.6072 4.6450 16 6 -0.8666 -2.7061 5.7342 17 6 -0.1999 -2.6531 7.1103 18 7 -1.2271 -2.7474 8.1561 19 6 -2.0960 -1.5615 8.1498 20 6 -3.1855 -1.7281 9.2123 21 8 -2.5730 -1.9437 10.4865 22 6 -1.7202 -3.0911 10.5286 23 6 -0.6159 -2.9382 9.4795 24 6 0.6014 -2.5483 -1.5017 25 6 -0.3553 -3.5096 -1.7689 26 6 -0.9605 -3.5560 -3.0109 27 6 -0.6029 -2.6463 -3.9883 28 6 0.3577 -1.6883 -3.7228 29 6 0.9600 -1.6395 -2.4797 30 1 -0.4850 0.8400 0.0004 31 1 1.4961 -2.4838 2.4706 32 1 -1.1609 -1.8291 3.1701 33 1 -1.0029 -3.6020 3.1634 34 1 0.9006 -3.4391 4.7435 35 1 0.7431 -1.6662 4.7508 36 1 -1.5636 -1.8739 5.6355 37 1 -1.4067 -3.6469 5.6286 38 1 0.4969 -3.4854 7.2088 39 1 0.3406 -1.7123 7.2161 40 1 -1.5029 -0.6746 8.3726 41 1 -2.5579 -1.4540 7.1684 42 1 -3.8119 -2.5838 8.9602 43 1 -3.7982 -0.8273 9.2507 44 1 -2.3040 -3.9864 10.3148 45 1 -1.2724 -3.1764 11.5187 46 1 0.0026 -3.8358 9.4686 47 1 0.0016 -2.0737 9.7233 48 1 -0.6325 -4.2222 -1.0062 49 1 -1.7106 -4.3047 -3.2184 50 1 -1.0738 -2.6843 -4.9596 51 1 0.6373 -0.9778 -4.4867 52 1 1.7102 -0.8908 -2.2721 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001540950176.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:43 Heat of formation + Delta-G solvation = -61.359561 kcal Electronic energy + Delta-G solvation = -30124.200117 eV Core-core repulsion = 26088.118497 eV Total energy + Delta-G solvation = -4036.081619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -39.85735 -38.91496 -37.52050 -36.69029 -34.79199 -33.56723 -32.29221 -31.45962 -30.82230 -29.69612 -28.87109 -27.29664 -25.81117 -24.35689 -23.90305 -22.40777 -21.27274 -21.04584 -20.65420 -20.38869 -19.02992 -16.92201 -16.69187 -16.46959 -15.90074 -15.84189 -15.37116 -15.24526 -15.19035 -14.96364 -14.75053 -14.58985 -14.22078 -13.93806 -13.64731 -13.50798 -12.99174 -12.63815 -12.53482 -12.32386 -12.21367 -12.07648 -12.01072 -11.73865 -11.68229 -11.50627 -11.30255 -11.13459 -10.99475 -10.95711 -10.80298 -10.73323 -10.47949 -10.40536 -10.03747 -9.96039 -9.67119 -9.35782 -8.74091 -8.68461 -8.22216 -7.88801 -7.69787 -7.40531 -6.14913 -4.28547 2.53732 2.59277 3.17993 3.28899 3.29979 3.41099 3.58956 4.18546 4.28518 4.46331 4.56478 4.66781 4.68069 4.83159 4.89200 5.00016 5.01397 5.06198 5.14513 5.22077 5.28841 5.33819 5.37177 5.46138 5.48435 5.58118 5.64443 5.70868 5.84978 5.89350 5.96930 5.98116 6.04955 6.13354 6.35079 6.43665 6.47284 6.63909 6.66019 6.67957 6.70256 6.81878 6.82364 6.93431 7.12964 7.20517 7.53655 7.61308 7.65911 7.69660 7.79942 8.15411 8.27122 8.65644 8.87245 9.37525 9.79647 10.86893 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015370 B = 0.002087 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.279374 B =13411.828617 C =14409.290984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.076 3.924 3 Si 0.883 3.117 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.055 3.945 10 H 0.056 0.944 11 C 0.554 3.446 12 O -0.551 6.551 13 N -0.737 5.737 14 C 0.131 3.869 15 C -0.127 4.127 16 C -0.111 4.111 17 C 0.056 3.944 18 N -0.538 5.538 19 C 0.013 3.987 20 C 0.063 3.937 21 O -0.388 6.388 22 C 0.064 3.936 23 C 0.017 3.983 24 C -0.016 4.016 25 C -0.099 4.099 26 C -0.143 4.143 27 C -0.145 4.145 28 C -0.147 4.147 29 C -0.074 4.074 30 H 0.264 0.736 31 H 0.394 0.606 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.042 0.958 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.042 0.958 48 H 0.108 0.892 49 H 0.102 0.898 50 H 0.100 0.900 51 H 0.102 0.898 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 -5.720 14.645 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.132 4.132 3 Si 0.711 3.289 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.211 1.211 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.034 3.966 10 H 0.074 0.926 11 C 0.343 3.657 12 O -0.427 6.427 13 N -0.390 5.390 14 C 0.006 3.994 15 C -0.166 4.166 16 C -0.150 4.150 17 C -0.071 4.071 18 N -0.263 5.263 19 C -0.115 4.115 20 C -0.014 4.014 21 O -0.307 6.307 22 C -0.013 4.013 23 C -0.112 4.112 24 C -0.017 4.017 25 C -0.117 4.117 26 C -0.161 4.161 27 C -0.163 4.163 28 C -0.165 4.165 29 C -0.092 4.092 30 H 0.074 0.926 31 H 0.227 0.773 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.104 0.896 47 H 0.060 0.940 48 H 0.126 0.874 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.120 0.880 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.908 -5.959 14.477 15.771 hybrid contribution 1.242 1.884 0.051 2.257 sum -0.666 -4.075 14.528 15.103 Atomic orbital electron populations 1.70041 1.05459 1.26824 1.45067 1.25045 0.94775 0.99144 0.94215 0.86666 0.80363 0.84058 0.77863 1.19457 1.20707 1.21063 1.20722 0.93381 0.88951 1.54730 0.91531 1.17887 0.92586 0.98163 0.87990 0.92609 1.20888 0.90234 0.71932 0.82663 1.90523 1.20420 1.49699 1.82092 1.45753 1.09360 1.78074 1.05782 1.20986 0.91672 1.00921 0.85839 1.21726 0.98326 1.02409 0.94120 1.21492 0.98226 1.03033 0.92230 1.22172 0.93087 1.00739 0.91114 1.62223 1.21308 1.38846 1.03914 1.22863 0.96005 0.91634 1.01009 1.22687 0.94161 1.01999 0.82523 1.87978 1.63138 1.47304 1.32250 1.22655 0.91137 0.88829 0.98710 1.22782 0.97022 1.01795 0.89567 1.19880 0.94191 0.92348 0.95266 1.20999 0.96354 0.99155 0.95199 1.20844 1.00928 0.99925 0.94426 1.20781 0.99645 0.97483 0.98424 1.20999 0.98871 0.99150 0.97514 1.21173 0.99113 0.97458 0.91423 0.92571 0.77302 0.92621 0.93040 0.91589 0.91551 0.91751 0.90873 0.90527 0.94608 0.93926 0.88957 0.92159 0.88423 0.92228 0.88560 0.89595 0.94013 0.87363 0.88030 0.88152 0.87990 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.96 11.11 55.43 0.62 -22.34 16 2 C 0.08 1.92 3.90 -17.82 -0.07 1.85 16 3 Si 0.88 19.72 29.54 -169.99 -5.02 14.69 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.54 -13.09 7.11 -34.44 -0.24 -13.34 16 8 H 0.07 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.05 1.29 2.78 -94.08 -0.26 1.03 16 10 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 11 C 0.55 13.09 5.28 -10.99 -0.06 13.04 16 12 O -0.55 -14.76 13.86 5.55 0.08 -14.68 16 13 N -0.74 -14.44 5.46 -60.29 -0.33 -14.77 16 14 C 0.13 2.21 5.67 -4.04 -0.02 2.19 16 15 C -0.13 -1.58 5.33 -26.73 -0.14 -1.72 16 16 C -0.11 -1.21 5.15 -26.73 -0.14 -1.35 16 17 C 0.06 0.55 4.96 -3.82 -0.02 0.53 16 18 N -0.54 -5.23 4.73 -234.31 -1.11 -6.34 16 19 C 0.01 0.12 5.44 -3.71 -0.02 0.10 16 20 C 0.06 0.56 7.01 37.21 0.26 0.82 16 21 O -0.39 -3.98 10.83 -35.23 -0.38 -4.36 16 22 C 0.06 0.51 7.01 37.20 0.26 0.77 16 23 C 0.02 0.14 5.64 -3.71 -0.02 0.12 16 24 C -0.02 -0.38 4.63 -104.62 -0.48 -0.86 16 25 C -0.10 -2.25 8.21 -39.58 -0.32 -2.58 16 26 C -0.14 -2.94 10.05 -39.58 -0.40 -3.34 16 27 C -0.15 -2.88 10.05 -39.58 -0.40 -3.27 16 28 C -0.15 -3.08 10.05 -39.59 -0.40 -3.48 16 29 C -0.07 -1.72 8.46 -39.59 -0.33 -2.06 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 31 H 0.39 6.98 8.36 -40.82 -0.34 6.64 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.73 6.52 -51.93 -0.34 0.39 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 39 H 0.04 0.36 8.12 -51.92 -0.42 -0.06 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.86 6.38 -51.93 -0.33 0.53 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 47 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.11 2.45 6.98 -52.49 -0.37 2.08 16 49 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 50 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 51 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 52 H 0.13 3.04 6.05 -52.48 -0.32 2.73 16 LS Contribution 410.10 15.07 6.18 6.18 Total: -1.00 -30.72 410.10 -11.62 -42.34 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -8.84 Total: 10.85 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.81 Total: -11.56 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.82 Total: -43.46 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.30 Total: -19.04 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.72 -11.62 -42.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001540950176.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.023 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds