Wall clock time and date at job start Sat Apr 11 2020 07:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00003 * 2 1 4 4 H 1.48502 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47001 * 300.00473 * 3 2 1 6 6 H 1.48506 * 109.46992 * 60.00325 * 3 2 1 7 7 C 1.37878 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99921 * 186.10369 * 7 2 1 9 9 C 1.50692 * 119.99925 * 6.38767 * 7 2 1 10 10 H 1.09005 * 109.47128 * 184.34224 * 9 7 2 11 11 C 1.50692 * 109.47178 * 304.33840 * 9 7 2 12 12 O 1.21291 * 120.00247 * 119.99939 * 11 9 7 13 13 N 1.34777 * 120.00414 * 300.00482 * 11 9 7 14 14 C 1.46503 * 120.00592 * 180.02562 * 13 11 9 15 15 C 1.52995 * 109.47173 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.46775 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.47027 * 179.97438 * 16 15 14 18 18 N 1.46896 * 109.47194 * 179.97438 * 17 16 15 19 19 C 1.47017 * 111.00125 * 293.64017 * 18 17 16 20 20 C 1.53101 * 109.25636 * 177.60859 * 19 18 17 21 21 O 1.43010 * 109.26271 * 56.84519 * 20 19 18 22 22 C 1.43020 * 113.73962 * 301.33439 * 21 20 19 23 23 C 1.47014 * 111.00286 * 170.00434 * 18 17 16 24 24 C 1.50703 * 109.47243 * 64.34072 * 9 7 2 25 25 C 1.38240 * 119.99704 * 193.10945 * 24 9 7 26 26 C 1.38241 * 119.99504 * 179.80760 * 25 24 9 27 27 C 1.38230 * 120.00041 * 0.40109 * 26 25 24 28 28 C 1.38241 * 119.99902 * 359.85802 * 27 26 25 29 29 C 1.38222 * 120.00123 * 359.95141 * 28 27 26 30 30 H 0.96997 * 119.99941 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99844 * 359.97438 * 13 11 9 32 32 H 1.09005 * 109.46591 * 299.99658 * 14 13 11 33 33 H 1.08998 * 109.47094 * 59.99016 * 14 13 11 34 34 H 1.08995 * 109.47004 * 299.99319 * 15 14 13 35 35 H 1.08999 * 109.47496 * 59.99990 * 15 14 13 36 36 H 1.08995 * 109.47098 * 299.99629 * 16 15 14 37 37 H 1.08998 * 109.47308 * 60.00130 * 16 15 14 38 38 H 1.08993 * 109.47465 * 300.00490 * 17 16 15 39 39 H 1.09008 * 109.46557 * 60.00094 * 17 16 15 40 40 H 1.08994 * 109.50642 * 297.53980 * 19 18 17 41 41 H 1.08992 * 109.50772 * 57.67088 * 19 18 17 42 42 H 1.09000 * 109.50481 * 296.91191 * 20 19 18 43 43 H 1.09004 * 109.54226 * 176.80377 * 20 19 18 44 44 H 1.08996 * 109.50320 * 298.73219 * 22 21 20 45 45 H 1.09003 * 109.54096 * 178.62294 * 22 21 20 46 46 H 1.09003 * 109.50013 * 302.33017 * 23 18 17 47 47 H 1.09000 * 109.50671 * 62.41208 * 23 18 17 48 48 H 1.07996 * 120.00455 * 0.02562 * 25 24 9 49 49 H 1.07996 * 119.99510 * 180.22987 * 26 25 24 50 50 H 1.08003 * 119.99824 * 179.82874 * 27 26 25 51 51 H 1.08005 * 119.99490 * 179.97438 * 28 27 26 52 52 H 1.08003 * 119.99928 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0799 -1.1967 0.0989 9 6 1.2581 -2.4950 -0.1463 10 1 1.9553 -3.3270 -0.0474 11 6 0.2043 -2.5924 0.9265 12 8 -0.9649 -2.6950 0.6207 13 7 0.5610 -2.5655 2.2260 14 6 -0.4634 -2.6608 3.2690 15 6 0.2033 -2.6072 4.6450 16 6 -0.8666 -2.7061 5.7342 17 6 -0.1999 -2.6531 7.1103 18 7 -1.2271 -2.7474 8.1561 19 6 -2.0960 -1.5615 8.1498 20 6 -3.1855 -1.7281 9.2123 21 8 -2.5730 -1.9437 10.4865 22 6 -1.7202 -3.0911 10.5286 23 6 -0.6159 -2.9382 9.4795 24 6 0.6014 -2.5483 -1.5017 25 6 -0.3553 -3.5096 -1.7689 26 6 -0.9605 -3.5560 -3.0109 27 6 -0.6029 -2.6463 -3.9883 28 6 0.3577 -1.6883 -3.7228 29 6 0.9600 -1.6395 -2.4797 30 1 -0.4850 0.8400 0.0004 31 1 1.4961 -2.4838 2.4706 32 1 -1.1609 -1.8291 3.1701 33 1 -1.0029 -3.6020 3.1634 34 1 0.9006 -3.4391 4.7435 35 1 0.7431 -1.6662 4.7508 36 1 -1.5636 -1.8739 5.6355 37 1 -1.4067 -3.6469 5.6286 38 1 0.4969 -3.4854 7.2088 39 1 0.3406 -1.7123 7.2161 40 1 -1.5029 -0.6746 8.3726 41 1 -2.5579 -1.4540 7.1684 42 1 -3.8119 -2.5838 8.9602 43 1 -3.7982 -0.8273 9.2507 44 1 -2.3040 -3.9864 10.3148 45 1 -1.2724 -3.1764 11.5187 46 1 0.0026 -3.8358 9.4686 47 1 0.0016 -2.0737 9.7233 48 1 -0.6325 -4.2222 -1.0062 49 1 -1.7106 -4.3047 -3.2184 50 1 -1.0738 -2.6843 -4.9596 51 1 0.6373 -0.9778 -4.4867 52 1 1.7102 -0.8908 -2.2721 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001540950176.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:42 Heat of formation + Delta-G solvation = -80.538119 kcal Electronic energy + Delta-G solvation = -30125.031761 eV Core-core repulsion = 26088.118497 eV Total energy + Delta-G solvation = -4036.913264 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.69862 -40.54223 -39.15407 -37.61795 -36.06448 -35.45078 -33.56360 -32.64182 -32.14706 -31.37740 -30.01129 -28.83498 -26.94539 -25.66027 -25.04199 -23.55264 -22.94315 -22.13895 -22.03645 -21.33467 -20.76498 -18.62363 -17.68152 -17.38194 -17.22095 -17.01358 -16.74772 -16.65278 -16.54943 -16.06472 -15.96405 -15.62024 -15.54179 -15.32717 -15.02239 -14.90890 -14.38490 -14.14887 -14.00521 -13.72671 -13.60141 -13.40220 -13.16549 -13.03433 -12.79919 -12.67829 -12.56707 -12.50367 -12.37298 -12.30295 -12.24679 -11.89525 -11.75840 -11.62519 -11.42347 -11.35271 -11.15665 -10.69224 -10.67005 -10.09242 -9.58329 -9.43328 -9.39640 -9.11165 -8.09007 -6.25932 0.86260 0.90699 1.39066 1.45573 1.53561 2.35307 2.48355 2.65898 2.89015 2.97914 3.19762 3.35167 3.78768 3.91435 3.96778 4.01080 4.15842 4.19410 4.26454 4.33141 4.34730 4.36356 4.41346 4.49373 4.55260 4.56341 4.65303 4.68358 4.71317 4.74741 4.80319 4.83107 4.87629 4.92079 4.99611 5.00725 5.03289 5.12539 5.17700 5.31210 5.37365 5.44750 5.53144 5.70804 5.87732 5.91938 5.92583 5.96741 5.97313 6.05499 6.15632 6.41385 6.51662 6.77318 7.16122 7.42598 8.00838 8.91658 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015370 B = 0.002087 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.279374 B =13411.828617 C =14409.290984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.041 3.959 3 Si 0.938 3.062 4 H -0.257 1.257 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.532 4.532 8 H 0.072 0.928 9 C 0.046 3.954 10 H 0.068 0.932 11 C 0.550 3.450 12 O -0.588 6.588 13 N -0.729 5.729 14 C 0.133 3.867 15 C -0.111 4.111 16 C -0.104 4.104 17 C 0.062 3.938 18 N -0.546 5.546 19 C 0.013 3.987 20 C 0.063 3.937 21 O -0.407 6.407 22 C 0.061 3.939 23 C 0.017 3.983 24 C -0.039 4.039 25 C -0.117 4.117 26 C -0.145 4.145 27 C -0.141 4.141 28 C -0.151 4.151 29 C -0.096 4.096 30 H 0.255 0.745 31 H 0.404 0.596 32 H 0.025 0.975 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.062 0.938 45 H 0.116 0.884 46 H 0.102 0.898 47 H 0.036 0.964 48 H 0.100 0.900 49 H 0.130 0.870 50 H 0.139 0.861 51 H 0.128 0.872 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 -6.229 14.836 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.181 1.181 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.570 4.570 8 H 0.090 0.910 9 C 0.024 3.976 10 H 0.086 0.914 11 C 0.340 3.660 12 O -0.468 6.468 13 N -0.380 5.380 14 C 0.009 3.991 15 C -0.150 4.150 16 C -0.142 4.142 17 C -0.065 4.065 18 N -0.271 5.271 19 C -0.115 4.115 20 C -0.014 4.014 21 O -0.326 6.326 22 C -0.016 4.016 23 C -0.111 4.111 24 C -0.040 4.040 25 C -0.136 4.136 26 C -0.163 4.163 27 C -0.159 4.159 28 C -0.169 4.169 29 C -0.114 4.114 30 H 0.064 0.936 31 H 0.239 0.761 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.134 0.866 46 H 0.120 0.880 47 H 0.054 0.946 48 H 0.118 0.882 49 H 0.148 0.852 50 H 0.157 0.843 51 H 0.146 0.854 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.100 -6.478 14.700 16.102 hybrid contribution 1.005 1.972 -0.037 2.214 sum -0.095 -4.506 14.663 15.340 Atomic orbital electron populations 1.70208 1.06930 1.26623 1.47213 1.25572 0.95051 1.01671 0.93999 0.85804 0.79937 0.80719 0.77072 1.18101 1.21407 1.21549 1.20919 0.93555 0.89299 1.53242 0.90977 1.18011 0.92877 0.98321 0.88363 0.91388 1.20956 0.89657 0.71562 0.83873 1.90487 1.21784 1.51661 1.82905 1.45691 1.10470 1.76609 1.05272 1.21060 0.91042 0.99464 0.87540 1.21599 0.98637 1.03185 0.91556 1.21390 0.97600 1.02623 0.92584 1.22089 0.93070 1.01115 0.90271 1.62234 1.21453 1.38787 1.04636 1.22856 0.96156 0.91351 1.01144 1.22748 0.93963 1.02690 0.81951 1.87952 1.63605 1.48246 1.32816 1.22821 0.90870 0.88223 0.99688 1.22846 0.97197 1.02258 0.88814 1.20008 0.95200 0.93290 0.95521 1.21060 0.96968 0.99277 0.96250 1.21219 1.00867 1.00593 0.93626 1.21197 0.98739 0.96173 0.99791 1.21337 0.98598 0.99822 0.97151 1.21175 0.99920 0.97586 0.92731 0.93580 0.76147 0.95660 0.93236 0.89543 0.91661 0.92660 0.90934 0.89198 0.94964 0.94781 0.89217 0.91994 0.87263 0.91990 0.86649 0.88006 0.94576 0.88219 0.85170 0.84292 0.85428 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.77 11.11 21.45 0.24 -48.53 16 2 C 0.04 2.09 3.90 84.66 0.33 2.42 16 3 Si 0.94 40.59 29.54 68.60 2.03 42.61 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.53 -25.82 7.11 25.60 0.18 -25.64 16 8 H 0.07 3.35 7.82 -2.91 -0.02 3.33 16 9 C 0.05 2.16 2.78 -13.04 -0.04 2.13 16 10 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 11 C 0.55 26.56 5.28 87.65 0.46 27.02 16 12 O -0.59 -32.53 13.86 -3.06 -0.04 -32.57 16 13 N -0.73 -28.80 5.46 -463.06 -2.53 -31.33 16 14 C 0.13 4.57 5.67 86.38 0.49 5.06 16 15 C -0.11 -2.66 5.33 30.59 0.16 -2.49 16 16 C -0.10 -2.17 5.15 30.60 0.16 -2.01 16 17 C 0.06 1.12 4.96 86.31 0.43 1.54 16 18 N -0.55 -9.97 4.73 -895.23 -4.23 -14.20 16 19 C 0.01 0.24 5.44 86.31 0.47 0.71 16 20 C 0.06 1.07 7.01 72.02 0.50 1.58 16 21 O -0.41 -7.95 10.83 -148.98 -1.61 -9.56 16 22 C 0.06 0.88 7.01 72.01 0.50 1.38 16 23 C 0.02 0.25 5.64 86.31 0.49 0.74 16 24 C -0.04 -1.90 4.63 -19.86 -0.09 -1.99 16 25 C -0.12 -5.38 8.21 22.27 0.18 -5.20 16 26 C -0.15 -5.75 10.05 22.27 0.22 -5.53 16 27 C -0.14 -5.24 10.05 22.27 0.22 -5.01 16 28 C -0.15 -6.10 10.05 22.27 0.22 -5.87 16 29 C -0.10 -4.49 8.46 22.26 0.19 -4.30 16 30 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 31 H 0.40 14.13 8.36 -92.71 -0.77 13.36 16 32 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.26 6.52 -2.39 -0.02 1.25 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.39 8.04 -2.39 -0.02 1.37 16 39 H 0.03 0.61 8.12 -2.38 -0.02 0.59 16 40 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.09 1.67 6.38 -2.39 -0.02 1.66 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.10 1.20 8.09 -2.39 -0.02 1.18 16 47 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.10 4.63 6.98 -2.91 -0.02 4.61 16 49 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 50 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 51 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 52 H 0.11 5.48 6.05 -2.91 -0.02 5.46 16 Total: -1.00 -66.75 410.10 -0.93 -67.68 By element: Atomic # 1 Polarization: 41.25 SS G_CDS: 0.12 Total: 41.37 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 5.09 Total: -15.46 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -6.52 Total: -94.07 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -1.66 Total: -42.14 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Total: -66.75 -0.93 -67.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001540950176.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.859 kcal (2) G-P(sol) polarization free energy of solvation -66.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds