Wall clock time and date at job start Sat Apr 11 2020 08:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99727 * 3 2 1 5 5 H 1.48497 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47169 * 120.00009 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 C 1.52996 * 109.46681 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.50117 * 54.93356 * 11 10 9 13 13 C 1.53039 * 109.49990 * 294.83199 * 11 10 9 14 14 C 1.53037 * 109.54095 * 178.68556 * 13 11 10 15 15 C 1.53195 * 109.31112 * 61.36908 * 14 13 11 16 16 N 1.46925 * 108.77414 * 305.36363 * 15 14 13 17 17 C 1.34776 * 120.63017 * 233.63089 * 16 15 14 18 18 O 1.21280 * 119.99735 * 179.97438 * 17 16 15 19 19 C 1.50698 * 120.00231 * 359.97438 * 17 16 15 20 20 C 1.52995 * 109.47310 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47120 * 180.02562 * 20 19 17 22 22 O 1.42903 * 109.47237 * 180.02562 * 21 20 19 23 23 C 1.35902 * 117.00150 * 180.02562 * 22 21 20 24 24 C 1.38739 * 120.05514 * 359.72156 * 23 22 21 25 25 C 1.38142 * 119.94217 * 179.74888 * 24 23 22 26 26 C 1.38271 * 120.05436 * 0.50484 * 25 24 23 27 27 C 1.38258 * 120.10941 * 359.76966 * 26 25 24 28 28 C 1.38142 * 120.05988 * 359.97438 * 27 26 25 29 29 C 1.46925 * 118.73947 * 53.61274 * 16 15 14 30 30 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 32 32 H 1.09006 * 109.46810 * 299.99903 * 10 9 7 33 33 H 1.08997 * 109.47198 * 60.00005 * 10 9 7 34 34 H 1.09000 * 109.46313 * 298.71429 * 13 11 10 35 35 H 1.08999 * 109.45485 * 58.66524 * 13 11 10 36 36 H 1.08996 * 109.50017 * 301.41595 * 14 13 11 37 37 H 1.09002 * 109.52437 * 181.33574 * 14 13 11 38 38 H 1.08998 * 109.58425 * 185.57588 * 15 14 13 39 39 H 1.08996 * 109.70585 * 65.22273 * 15 14 13 40 40 H 1.08999 * 109.47425 * 300.00336 * 19 17 16 41 41 H 1.09010 * 109.46670 * 60.00299 * 19 17 16 42 42 H 1.08994 * 109.47859 * 300.00545 * 20 19 17 43 43 H 1.09000 * 109.46872 * 60.00834 * 20 19 17 44 44 H 1.08999 * 109.47442 * 300.00557 * 21 20 19 45 45 H 1.08997 * 109.47129 * 60.00644 * 21 20 19 46 46 H 1.08000 * 120.02504 * 359.97438 * 24 23 22 47 47 H 1.08001 * 119.96864 * 180.23395 * 25 24 23 48 48 H 1.08001 * 119.93888 * 179.74807 * 26 25 24 49 49 H 1.08001 * 119.96931 * 179.97438 * 27 26 25 50 50 H 1.08001 * 120.02688 * 180.02562 * 28 27 26 51 51 H 1.09002 * 109.58728 * 186.60350 * 29 16 15 52 52 H 1.08995 * 109.59198 * 66.17205 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 6 1.0640 -4.8196 0.0190 12 1 0.3792 -4.7168 -0.8228 13 6 0.2710 -4.8076 1.3279 14 6 -0.7465 -5.9507 1.3204 15 6 -0.0057 -7.2876 1.2163 16 7 0.8706 -7.2521 0.0376 17 6 0.7998 -8.2176 -0.9001 18 8 1.5284 -8.1767 -1.8688 19 6 -0.1846 -9.3481 -0.7448 20 6 -0.0617 -10.2988 -1.9371 21 6 -1.0615 -11.4461 -1.7797 22 8 -0.9463 -12.3345 -2.8931 23 6 -1.7708 -13.4148 -2.9084 24 6 -2.6682 -13.6187 -1.8702 25 6 -3.5088 -14.7147 -1.8907 26 6 -3.4491 -15.6137 -2.9396 27 6 -2.5517 -15.4157 -3.9725 28 6 -1.7126 -14.3184 -3.9594 29 6 1.8253 -6.1438 -0.0998 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0068 32 1 2.6849 -3.7191 -0.8762 33 1 2.6848 -3.7097 0.9038 34 1 0.9541 -4.9348 2.1676 35 1 -0.2522 -3.8564 1.4266 36 1 -1.4146 -5.8375 0.4667 37 1 -1.3273 -5.9274 2.2425 38 1 -0.7272 -8.0978 1.1110 39 1 0.5937 -7.4464 2.1127 40 1 0.0275 -9.8906 0.1765 41 1 -1.1968 -8.9454 -0.7045 42 1 -0.2740 -9.7561 -2.8581 43 1 0.9504 -10.7015 -1.9778 44 1 -0.8496 -11.9891 -0.8587 45 1 -2.0735 -11.0432 -1.7393 46 1 -2.7121 -12.9192 -1.0486 47 1 -4.2102 -14.8718 -1.0846 48 1 -4.1043 -16.4722 -2.9517 49 1 -2.5066 -16.1196 -4.7904 50 1 -1.0120 -14.1641 -4.7667 51 1 2.3120 -6.1993 -1.0736 52 1 2.5743 -6.2066 0.6895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566912574.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:00:00 Heat of formation + Delta-G solvation = -72.331326 kcal Electronic energy + Delta-G solvation = -29056.514598 eV Core-core repulsion = 25019.957207 eV Total energy + Delta-G solvation = -4036.557391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -41.35588 -40.97404 -38.98797 -38.36798 -36.61391 -34.98622 -34.29550 -32.93576 -31.95342 -31.72465 -30.75446 -28.62246 -27.10579 -26.22619 -24.73519 -23.87195 -23.21147 -23.02975 -22.18851 -21.21515 -19.92567 -19.22737 -19.08786 -18.15972 -17.43188 -17.13752 -16.86303 -16.62800 -16.44264 -16.41559 -15.74754 -15.56743 -15.34588 -15.26501 -14.97868 -14.86444 -14.62091 -14.31730 -14.13977 -13.90543 -13.73298 -13.61721 -13.41149 -13.28935 -13.08663 -12.76179 -12.68464 -12.44925 -12.41820 -12.31104 -12.20393 -12.06078 -11.94350 -11.72244 -11.66255 -11.56999 -11.55229 -11.37132 -10.93192 -10.80379 -9.92883 -9.63934 -9.14935 -9.01506 -7.96707 -5.25642 0.41725 0.51576 1.46017 1.49315 1.55381 1.61628 1.88444 2.32622 2.55284 2.87396 3.36426 3.47661 3.76879 3.78187 3.89069 3.91029 3.94216 3.97906 4.05396 4.07512 4.19971 4.29113 4.30973 4.38572 4.40580 4.42783 4.44589 4.52952 4.58419 4.59187 4.64149 4.70244 4.78668 4.78873 4.87616 4.90076 4.97022 5.03677 5.11238 5.19005 5.21328 5.24668 5.39527 5.40641 5.46140 5.50504 5.50770 5.53958 5.63132 5.90042 6.25186 6.44503 6.50025 7.16953 7.31829 8.06798 8.31383 9.26521 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.026690 B = 0.001443 C = 0.001432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.822504 B =19399.609521 C =19554.341557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.251 4.251 8 H 0.074 0.926 9 N -0.741 5.741 10 C 0.157 3.843 11 C -0.093 4.093 12 H 0.049 0.951 13 C -0.108 4.108 14 C -0.129 4.129 15 C 0.105 3.895 16 N -0.609 5.609 17 C 0.505 3.495 18 O -0.593 6.593 19 C -0.124 4.124 20 C -0.100 4.100 21 C 0.062 3.938 22 O -0.340 6.340 23 C 0.108 3.892 24 C -0.217 4.217 25 C -0.086 4.086 26 C -0.167 4.167 27 C -0.086 4.086 28 C -0.178 4.178 29 C 0.126 3.874 30 H 0.252 0.748 31 H 0.375 0.625 32 H 0.010 0.990 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.090 0.910 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.146 0.854 47 H 0.148 0.852 48 H 0.145 0.855 49 H 0.148 0.852 50 H 0.127 0.873 51 H 0.067 0.933 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.819 -34.287 2.875 35.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.803 3.197 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.382 4.382 8 H 0.092 0.908 9 N -0.384 5.384 10 C 0.030 3.970 11 C -0.112 4.112 12 H 0.068 0.932 13 C -0.146 4.146 14 C -0.167 4.167 15 C -0.016 4.016 16 N -0.341 5.341 17 C 0.296 3.704 18 O -0.474 6.474 19 C -0.164 4.164 20 C -0.139 4.139 21 C -0.013 4.013 22 O -0.254 6.254 23 C 0.063 3.937 24 C -0.235 4.235 25 C -0.104 4.104 26 C -0.185 4.185 27 C -0.104 4.104 28 C -0.197 4.197 29 C 0.003 3.997 30 H 0.060 0.940 31 H 0.207 0.793 32 H 0.028 0.972 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.140 0.860 39 H 0.108 0.892 40 H 0.151 0.849 41 H 0.143 0.857 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.164 0.836 47 H 0.166 0.834 48 H 0.163 0.837 49 H 0.165 0.835 50 H 0.145 0.855 51 H 0.086 0.914 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.135 -34.104 2.255 35.133 hybrid contribution 0.287 1.720 -0.338 1.776 sum -7.848 -32.384 1.917 33.376 Atomic orbital electron populations 1.69803 1.06567 1.26183 1.59293 1.25557 0.96424 1.01051 1.03482 0.85202 0.77232 0.79084 0.78179 1.20672 1.21924 1.20166 1.19613 0.91501 0.85467 1.41654 0.90848 1.42508 1.05579 1.00944 1.89393 1.20733 0.93744 0.84951 0.97532 1.21472 0.97250 0.93626 0.98897 0.93234 1.21464 0.98169 0.98909 0.96046 1.21917 0.97537 0.93828 1.03465 1.22100 0.93559 0.98753 0.87196 1.48252 1.38551 1.23748 1.23555 1.21361 0.84122 0.83808 0.81147 1.90702 1.46207 1.78091 1.32420 1.21576 0.99904 0.93764 1.01108 1.21143 0.99490 0.94668 0.98555 1.22917 1.00428 0.89739 0.88170 1.86041 1.57902 1.34416 1.47048 1.19324 0.91068 0.87673 0.95591 1.21553 0.99737 1.02210 1.00044 1.21346 0.97464 0.92962 0.98658 1.21443 1.00796 1.01235 0.95022 1.21280 0.93976 0.96057 0.99079 1.20722 1.03759 0.96075 0.99096 1.21369 0.91308 0.84480 1.02593 0.93952 0.79306 0.97171 0.95387 0.91184 0.93725 0.92421 0.88192 0.86025 0.89212 0.84870 0.85735 0.92520 0.91864 0.89666 0.90148 0.83631 0.83426 0.83728 0.83457 0.85539 0.91427 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.69 13.06 21.65 0.28 -59.41 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -38.62 5.32 -343.44 -1.83 -40.45 16 10 C 0.16 6.51 5.65 86.38 0.49 7.00 16 11 C -0.09 -3.04 2.37 -10.71 -0.03 -3.07 16 12 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 13 C -0.11 -3.04 5.06 30.62 0.15 -2.89 16 14 C -0.13 -2.40 6.08 30.67 0.19 -2.22 16 15 C 0.11 1.42 6.34 86.36 0.55 1.97 16 16 N -0.61 -13.35 2.97 -818.90 -2.43 -15.78 16 17 C 0.51 11.92 7.70 87.66 0.67 12.60 16 18 O -0.59 -20.24 15.39 -3.03 -0.05 -20.29 16 19 C -0.12 -1.54 4.05 29.85 0.12 -1.42 16 20 C -0.10 -1.69 4.87 30.59 0.15 -1.54 16 21 C 0.06 0.79 4.74 71.98 0.34 1.14 16 22 O -0.34 -6.76 10.14 -92.45 -0.94 -7.70 16 23 C 0.11 1.95 6.69 22.51 0.15 2.10 16 24 C -0.22 -2.89 9.04 22.37 0.20 -2.69 16 25 C -0.09 -0.94 10.04 22.25 0.22 -0.72 16 26 C -0.17 -1.81 10.04 22.28 0.22 -1.58 16 27 C -0.09 -1.08 10.04 22.25 0.22 -0.86 16 28 C -0.18 -3.01 9.99 22.36 0.22 -2.79 16 29 C 0.13 3.53 5.72 86.37 0.49 4.02 16 30 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.37 20.60 6.86 -92.71 -0.64 19.96 16 32 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.04 1.57 7.16 -2.39 -0.02 1.55 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.12 0.72 5.93 -2.39 -0.01 0.70 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.13 0.72 7.94 -2.39 -0.02 0.70 16 41 H 0.12 0.93 7.69 -2.38 -0.02 0.91 16 42 H 0.06 1.24 8.10 -2.39 -0.02 1.23 16 43 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 44 H 0.09 0.71 7.65 -2.39 -0.02 0.69 16 45 H 0.08 0.76 7.67 -2.39 -0.02 0.74 16 46 H 0.15 1.27 6.30 -2.91 -0.02 1.25 16 47 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 48 H 0.14 0.85 8.06 -2.91 -0.02 0.82 16 49 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 50 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 51 H 0.07 2.23 7.00 -2.39 -0.02 2.22 16 52 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -78.81 415.59 3.01 -75.80 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.26 Total: 27.38 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 5.68 Total: -8.25 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -3.98 Total: -115.64 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.98 Total: -27.99 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -78.81 3.01 -75.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566912574.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.466 kcal (2) G-P(sol) polarization free energy of solvation -78.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds