Wall clock time and date at job start Sat Apr 11 2020 08:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99818 * 2 1 4 4 H 1.48501 * 109.47226 * 270.00248 * 3 2 1 5 5 H 1.48499 * 109.47045 * 29.99944 * 3 2 1 6 6 H 1.48499 * 109.47475 * 150.00439 * 3 2 1 7 7 C 1.38814 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99783 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00079 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46948 * 179.97438 * 10 9 7 12 12 C 1.38241 * 119.99767 * 90.00579 * 11 10 9 13 13 C 1.38226 * 119.99706 * 180.02562 * 12 11 10 14 14 C 1.38235 * 120.00243 * 359.97438 * 13 12 11 15 15 C 1.50705 * 120.00054 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47279 * 90.00145 * 15 14 13 17 17 C 1.34771 * 120.00221 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99967 * 0.02562 * 17 16 15 19 19 C 1.50704 * 120.00268 * 179.97438 * 17 16 15 20 20 C 1.52995 * 109.47200 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47470 * 180.02562 * 20 19 17 22 22 C 1.53175 * 109.54388 * 294.56151 * 21 20 19 23 23 C 1.53094 * 109.16661 * 183.14993 * 22 21 20 24 24 O 1.42898 * 109.41211 * 57.60371 * 23 22 21 25 25 C 1.42897 * 114.10001 * 298.84343 * 24 23 22 26 26 C 1.53089 * 109.41656 * 61.16248 * 25 24 23 27 27 C 1.38228 * 120.00228 * 0.25708 * 14 13 12 28 28 C 1.38235 * 120.00182 * 270.01989 * 11 10 9 29 29 H 0.96994 * 120.00388 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99895 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.47186 * 60.00024 * 10 9 7 32 32 H 1.08996 * 109.47238 * 299.99827 * 10 9 7 33 33 H 1.08002 * 119.99683 * 359.97438 * 12 11 10 34 34 H 1.08005 * 120.00136 * 179.97438 * 13 12 11 35 35 H 1.09010 * 109.47099 * 330.00108 * 15 14 13 36 36 H 1.08994 * 109.47143 * 210.00703 * 15 14 13 37 37 H 0.97000 * 120.00147 * 359.97438 * 16 15 14 38 38 H 1.09002 * 109.46630 * 60.00107 * 19 17 16 39 39 H 1.08994 * 109.47152 * 300.00202 * 19 17 16 40 40 H 1.09002 * 109.47230 * 60.00488 * 20 19 17 41 41 H 1.09007 * 109.47507 * 300.00121 * 20 19 17 42 42 H 1.09004 * 109.61242 * 54.77570 * 21 20 19 43 43 H 1.09004 * 109.52259 * 303.05258 * 22 21 20 44 44 H 1.09006 * 109.52330 * 63.24092 * 22 21 20 45 45 H 1.09006 * 109.47665 * 297.62062 * 23 22 21 46 46 H 1.08993 * 109.47955 * 177.58818 * 23 22 21 47 47 H 1.09002 * 109.48425 * 301.17758 * 25 24 23 48 48 H 1.09001 * 109.49443 * 181.15303 * 25 24 23 49 49 H 1.08997 * 109.52675 * 182.48845 * 26 25 24 50 50 H 1.08995 * 109.52428 * 62.29514 * 26 25 24 51 51 H 1.07997 * 120.00351 * 179.72292 * 27 14 13 52 52 H 1.07999 * 120.00049 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 6 1.0790 -4.8022 -0.0008 12 6 0.6286 -5.3273 -1.1976 13 6 -0.2701 -6.3776 -1.1968 14 6 -0.7179 -6.9032 0.0007 15 6 -1.6981 -8.0480 0.0016 16 7 -0.9666 -9.3172 0.0000 17 6 -1.6413 -10.4839 0.0009 18 8 -2.8542 -10.4830 0.0026 19 6 -0.8888 -11.7896 -0.0013 20 6 -1.8839 -12.9517 0.0010 21 6 -1.1200 -14.2774 -0.0006 22 6 -0.3472 -14.4218 -1.3152 23 6 0.3501 -15.7845 -1.3412 24 8 -0.6234 -16.8192 -1.1867 25 6 -1.3444 -16.7627 0.0458 26 6 -2.1098 -15.4394 0.1274 27 6 -0.2712 -6.3750 1.1975 28 6 0.6309 -5.3276 1.1967 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 2.6857 -3.7148 0.8878 32 1 2.6842 -3.7140 -0.8921 33 1 0.9782 -4.9164 -2.1332 34 1 -0.6223 -6.7877 -2.1318 35 1 -2.3260 -7.9893 -0.8876 36 1 -2.3235 -7.9901 0.8924 37 1 0.0034 -9.3180 -0.0017 38 1 -0.2603 -11.8482 0.8874 39 1 -0.2641 -11.8474 -0.8926 40 1 -2.5128 -12.8934 -0.8874 41 1 -2.5084 -12.8937 0.8926 42 1 -0.4224 -14.2986 0.8366 43 1 -1.0393 -14.3508 -2.1543 44 1 0.3981 -13.6298 -1.3886 45 1 1.0714 -15.8393 -0.5258 46 1 0.8665 -15.9104 -2.2927 47 1 -0.6453 -16.8303 0.8793 48 1 -2.0485 -17.5934 0.0937 49 1 -2.6249 -15.3750 1.0858 50 1 -2.8375 -15.3889 -0.6824 51 1 -0.6246 -6.7827 2.1331 52 1 0.9823 -4.9169 2.1317 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568121051.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:00:18 Heat of formation + Delta-G solvation = -95.090413 kcal Electronic energy + Delta-G solvation = -28459.099654 eV Core-core repulsion = 24421.555356 eV Total energy + Delta-G solvation = -4037.544299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.05690 -40.42384 -40.00458 -36.99878 -36.36431 -35.70846 -33.75795 -32.43943 -31.94091 -31.85648 -31.47296 -28.62465 -26.93217 -25.71366 -24.46210 -24.10749 -23.62939 -22.95511 -21.69623 -21.23518 -20.88287 -19.33438 -18.31155 -17.31311 -17.04463 -16.93636 -16.84566 -16.79768 -16.37828 -16.35532 -15.86518 -15.68808 -15.42042 -15.25324 -15.04040 -14.84630 -14.58229 -14.34590 -14.31455 -13.85368 -13.72526 -13.36681 -13.17491 -13.11388 -13.09091 -12.98134 -12.85622 -12.76849 -12.24265 -12.19208 -12.11843 -11.96168 -11.91392 -11.73830 -11.72579 -11.23460 -11.14957 -10.99049 -10.95802 -10.40630 -10.10908 -9.82426 -9.63425 -9.04101 -7.96484 -5.26907 0.24653 0.50045 1.47452 1.49276 1.57901 1.67869 2.25466 2.55423 2.89334 3.02942 3.36941 3.64761 3.71337 3.73776 3.83144 3.89089 4.03594 4.06462 4.12100 4.13516 4.23912 4.26080 4.29297 4.31881 4.43949 4.53661 4.56159 4.63207 4.65820 4.69578 4.77378 4.83471 4.84738 4.89256 4.89462 4.92556 4.96592 5.07194 5.09795 5.19484 5.19850 5.22239 5.32160 5.41300 5.46055 5.47080 5.52357 5.59693 5.80957 6.05903 6.24124 6.32316 6.58122 7.27861 7.30924 8.03950 8.28856 9.26800 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.032962 B = 0.001327 C = 0.001301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.261633 B =21095.480453 C =21515.832935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.250 4.250 8 H 0.079 0.921 9 N -0.739 5.739 10 C 0.185 3.815 11 C -0.087 4.087 12 C -0.115 4.115 13 C -0.099 4.099 14 C -0.108 4.108 15 C 0.170 3.830 16 N -0.716 5.716 17 C 0.507 3.493 18 O -0.590 6.590 19 C -0.133 4.133 20 C -0.092 4.092 21 C -0.085 4.085 22 C -0.152 4.152 23 C 0.054 3.946 24 O -0.411 6.411 25 C 0.057 3.943 26 C -0.152 4.152 27 C -0.099 4.099 28 C -0.115 4.115 29 H 0.252 0.748 30 H 0.373 0.627 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.122 0.878 34 H 0.141 0.859 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.415 0.585 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.061 0.939 46 H 0.098 0.902 47 H 0.061 0.939 48 H 0.097 0.903 49 H 0.081 0.919 50 H 0.058 0.942 51 H 0.141 0.859 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.948 -34.902 0.628 34.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.381 4.381 8 H 0.097 0.903 9 N -0.382 5.382 10 C 0.059 3.941 11 C -0.088 4.088 12 C -0.134 4.134 13 C -0.117 4.117 14 C -0.109 4.109 15 C 0.047 3.953 16 N -0.368 5.368 17 C 0.295 3.705 18 O -0.470 6.470 19 C -0.173 4.173 20 C -0.130 4.130 21 C -0.103 4.103 22 C -0.190 4.190 23 C -0.022 4.022 24 O -0.331 6.331 25 C -0.019 4.019 26 C -0.190 4.190 27 C -0.117 4.117 28 C -0.134 4.134 29 H 0.060 0.940 30 H 0.205 0.795 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.140 0.860 34 H 0.159 0.841 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.252 0.748 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.080 0.920 46 H 0.117 0.883 47 H 0.079 0.921 48 H 0.115 0.885 49 H 0.100 0.900 50 H 0.077 0.923 51 H 0.159 0.841 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.233 -34.933 0.499 34.937 hybrid contribution 0.198 1.741 0.103 1.755 sum 0.431 -33.192 0.601 33.200 Atomic orbital electron populations 1.69833 1.06755 1.26160 1.59252 1.25604 0.96375 1.01201 1.03410 0.85105 0.77728 0.79202 0.77499 1.21304 1.22196 1.19212 1.19681 0.91638 0.85137 1.41644 0.90322 1.42540 1.05535 1.00645 1.89478 1.19772 0.92471 0.83180 0.98628 1.20174 0.98243 0.96130 0.94261 1.21174 0.97992 0.96678 0.97555 1.21186 0.96359 0.95786 0.98392 1.19793 0.99406 0.98381 0.93330 1.20003 0.92269 0.80446 1.02607 1.46074 1.11167 1.04674 1.74875 1.21423 0.87880 0.86659 0.74504 1.90706 1.16298 1.88401 1.51622 1.21770 0.99341 0.89471 1.06696 1.21277 0.97066 0.92482 1.02198 1.21201 0.97134 0.93470 0.98504 1.22320 1.00572 0.98403 0.97665 1.22743 0.90204 0.86496 1.02764 1.87902 1.53703 1.51617 1.39838 1.22687 0.95200 0.97799 0.86215 1.22236 0.98670 0.95108 1.02955 1.21188 0.96311 0.95795 0.98399 1.21177 0.97965 0.96700 0.97541 0.93972 0.79541 0.95125 0.95135 0.86042 0.84133 0.91212 0.91143 0.74848 0.86332 0.86556 0.93033 0.92348 0.89455 0.92228 0.88801 0.92034 0.88347 0.92097 0.88462 0.90021 0.92291 0.84087 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.98 45.94 29.55 68.60 2.03 47.96 16 4 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 9 N -0.74 -38.06 5.59 -347.18 -1.94 -40.00 16 10 C 0.19 7.45 6.38 85.64 0.55 7.99 16 11 C -0.09 -2.91 5.25 -19.86 -0.10 -3.01 16 12 C -0.12 -3.39 9.70 22.27 0.22 -3.17 16 13 C -0.10 -2.33 9.70 22.27 0.22 -2.11 16 14 C -0.11 -2.36 5.25 -19.87 -0.10 -2.46 16 15 C 0.17 3.30 5.80 85.64 0.50 3.79 16 16 N -0.72 -10.79 5.55 -466.78 -2.59 -13.38 16 17 C 0.51 8.91 7.83 87.66 0.69 9.59 16 18 O -0.59 -16.04 15.98 -3.06 -0.05 -16.09 16 19 C -0.13 -1.23 5.46 29.85 0.16 -1.06 16 20 C -0.09 -1.11 3.98 30.59 0.12 -0.99 16 21 C -0.08 -0.73 2.27 -10.68 -0.02 -0.75 16 22 C -0.15 -1.25 5.10 30.68 0.16 -1.09 16 23 C 0.05 0.50 6.84 72.01 0.49 0.99 16 24 O -0.41 -5.99 10.76 -148.98 -1.60 -7.59 16 25 C 0.06 0.58 6.84 72.01 0.49 1.07 16 26 C -0.15 -1.53 5.42 30.68 0.17 -1.36 16 27 C -0.10 -2.31 9.70 22.27 0.22 -2.10 16 28 C -0.12 -3.38 9.70 22.27 0.22 -3.16 16 29 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.37 20.76 7.66 -92.71 -0.71 20.05 16 31 H 0.03 1.21 8.09 -2.38 -0.02 1.19 16 32 H 0.03 1.21 8.09 -2.39 -0.02 1.19 16 33 H 0.12 3.55 8.06 -2.91 -0.02 3.52 16 34 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.07 1.46 8.09 -2.38 -0.02 1.44 16 36 H 0.07 1.46 8.08 -2.39 -0.02 1.44 16 37 H 0.41 4.26 8.46 -92.71 -0.78 3.47 16 38 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.12 0.61 6.66 -2.39 -0.02 0.59 16 40 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 41 H 0.06 0.87 8.10 -2.38 -0.02 0.85 16 42 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 43 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.09 0.42 6.75 -2.38 -0.02 0.40 16 45 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 46 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 48 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 52 H 0.12 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -73.42 422.28 0.80 -72.62 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: -0.58 Total: 30.79 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 5.26 Total: -14.74 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -4.25 Total: -112.95 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -1.65 Total: -23.68 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -73.42 0.80 -72.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568121051.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.474 kcal (2) G-P(sol) polarization free energy of solvation -73.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds