Wall clock time and date at job start Sat Apr 11 2020 08:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00297 * 2 1 4 4 H 1.48504 * 109.46997 * 269.99722 * 3 2 1 5 5 H 1.48496 * 109.47206 * 30.00098 * 3 2 1 6 6 H 1.48502 * 109.47232 * 150.00275 * 3 2 1 7 7 C 1.38817 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99835 * 359.97438 * 7 2 1 9 9 N 1.36928 * 120.00437 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00460 * 174.22113 * 9 7 2 11 11 C 1.53000 * 110.01495 * 301.44911 * 10 9 7 12 12 N 1.46501 * 109.47579 * 303.90276 * 11 10 9 13 13 C 1.34770 * 120.00343 * 175.12777 * 12 11 10 14 14 O 1.21280 * 120.00209 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99976 * 179.72116 * 13 12 11 16 16 C 1.52998 * 109.47426 * 180.27564 * 15 13 12 17 17 C 1.53001 * 109.47600 * 180.02562 * 16 15 13 18 18 O 1.42898 * 109.47012 * 179.97438 * 17 16 15 19 19 C 1.35905 * 116.99568 * 179.97438 * 18 17 16 20 20 C 1.38728 * 120.05587 * 359.73142 * 19 18 17 21 21 C 1.38149 * 119.94450 * 179.73688 * 20 19 18 22 22 C 1.38274 * 120.05233 * 0.51571 * 21 20 19 23 23 C 1.38267 * 120.10948 * 359.75785 * 22 21 20 24 24 C 1.38137 * 120.05868 * 359.97438 * 23 22 21 25 25 C 1.54266 * 110.07338 * 62.86651 * 10 9 7 26 26 C 1.54885 * 104.19651 * 95.69781 * 25 10 9 27 27 C 1.54893 * 102.74899 * 37.94595 * 26 25 10 28 28 C 1.53868 * 110.03513 * 180.02562 * 10 9 7 29 29 H 0.97001 * 119.99378 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99959 * 354.22261 * 9 7 2 31 31 H 1.09001 * 109.47502 * 183.89764 * 11 10 9 32 32 H 1.09000 * 109.47008 * 63.90092 * 11 10 9 33 33 H 0.97005 * 119.99341 * 355.12473 * 12 11 10 34 34 H 1.09007 * 109.47486 * 300.27665 * 15 13 12 35 35 H 1.09001 * 109.47065 * 60.27720 * 15 13 12 36 36 H 1.09007 * 109.46871 * 300.00478 * 16 15 13 37 37 H 1.09001 * 109.46871 * 60.00037 * 16 15 13 38 38 H 1.08994 * 109.46794 * 300.00276 * 17 16 15 39 39 H 1.09000 * 109.46552 * 59.99789 * 17 16 15 40 40 H 1.07999 * 120.02912 * 359.97438 * 20 19 18 41 41 H 1.07997 * 119.97701 * 180.27644 * 21 20 19 42 42 H 1.08001 * 119.94354 * 179.74123 * 22 21 20 43 43 H 1.08001 * 119.96974 * 179.97438 * 23 22 21 44 44 H 1.08003 * 120.03086 * 179.97438 * 24 23 22 45 45 H 1.08996 * 110.48502 * 214.37967 * 25 10 9 46 46 H 1.08997 * 110.48372 * 337.02359 * 25 10 9 47 47 H 1.08996 * 110.75567 * 279.63201 * 26 25 10 48 48 H 1.08998 * 110.75616 * 156.25697 * 26 25 10 49 49 H 1.08999 * 110.48502 * 203.38477 * 27 26 25 50 50 H 1.08995 * 110.48924 * 80.73355 * 27 26 25 51 51 H 1.09004 * 110.03473 * 359.94738 * 28 10 9 52 52 H 1.08994 * 110.03599 * 121.38346 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1376 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4646 0.1261 11 6 3.7249 -3.1658 1.4297 12 7 3.9674 -2.2651 2.5594 13 6 3.6065 -2.6335 3.8046 14 8 3.0805 -3.7105 3.9898 15 6 3.8617 -1.7097 4.9674 16 6 3.3673 -2.3657 6.2582 17 6 3.6258 -1.4275 7.4388 18 8 3.1634 -2.0401 8.6441 19 6 3.3198 -1.3336 9.7945 20 6 3.9113 -0.0791 9.7645 21 6 4.0643 0.6393 10.9346 22 6 3.6380 0.1045 12.1363 23 6 3.0533 -1.1481 12.1696 24 6 2.8931 -1.8681 11.0016 25 6 3.8041 -3.3792 -1.0775 26 6 4.9697 -3.1158 -2.0628 27 6 6.1877 -2.9623 -1.1182 28 6 5.6276 -2.1997 0.0994 29 1 -0.4849 0.8401 0.0004 30 1 3.8646 -0.3665 -0.0856 31 1 4.3247 -4.0681 1.5491 32 1 2.6686 -3.4332 1.3986 33 1 4.3878 -1.4036 2.4112 34 1 4.9308 -1.5121 5.0468 35 1 3.3296 -0.7715 4.8098 36 1 2.2982 -2.5633 6.1788 37 1 3.8994 -3.3038 6.4158 38 1 4.6947 -1.2295 7.5182 39 1 3.0933 -0.4896 7.2808 40 1 4.2485 0.3372 8.8268 41 1 4.5206 1.6179 10.9112 42 1 3.7622 0.6659 13.0505 43 1 2.7216 -1.5638 13.1095 44 1 2.4367 -2.8466 11.0282 45 1 3.7937 -4.4246 -0.7694 46 1 2.8517 -3.1047 -1.5312 47 1 4.7996 -2.1982 -2.6259 48 1 5.1064 -3.9631 -2.7347 49 1 6.9747 -2.3836 -1.6016 50 1 6.5623 -3.9404 -0.8167 51 1 5.8181 -1.1319 -0.0091 52 1 6.0876 -2.5703 1.0153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568246108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:00:23 Heat of formation + Delta-G solvation = -53.708241 kcal Electronic energy + Delta-G solvation = -29818.708419 eV Core-core repulsion = 25782.958586 eV Total energy + Delta-G solvation = -4035.749833 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.31899 -39.55504 -38.33748 -37.64770 -34.22818 -33.78461 -33.36248 -31.27271 -31.01617 -30.10680 -28.62669 -28.38303 -27.07873 -24.48479 -23.28079 -22.86097 -22.40791 -21.37939 -20.51996 -19.72971 -18.71140 -18.37578 -17.60171 -16.94652 -16.54906 -16.20766 -15.88168 -15.68911 -15.24538 -15.06024 -14.71652 -14.64165 -14.34022 -13.84475 -13.74751 -13.65664 -13.21837 -13.06699 -12.86770 -12.71823 -12.57537 -12.29135 -12.03055 -11.85134 -11.80572 -11.61296 -11.41808 -11.28052 -10.95782 -10.89437 -10.84418 -10.72221 -10.69902 -10.49136 -10.41178 -10.25887 -10.02303 -9.58980 -9.48227 -9.27579 -8.96262 -8.47451 -8.43826 -7.35276 -5.81766 -3.19017 1.06918 1.19726 2.90040 3.05542 3.26595 3.31188 3.38657 3.53589 3.72830 4.51471 4.53407 4.61662 4.75943 4.77637 4.85511 4.92253 4.96953 4.98726 5.02915 5.10056 5.12161 5.24302 5.27709 5.34410 5.38078 5.44337 5.49777 5.59767 5.67686 5.73829 5.81263 5.83503 5.96447 6.00111 6.04385 6.06675 6.14208 6.15932 6.18387 6.20499 6.26203 6.33323 6.44172 6.46605 6.52928 6.67155 6.73190 6.92284 7.03293 7.22549 7.94178 7.99951 8.36776 8.67384 9.13860 9.85488 10.04282 11.36302 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.002120 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.678616 B =13203.251953 C =14369.165737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.881 3.119 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.238 4.238 8 H 0.091 0.909 9 N -0.736 5.736 10 C 0.194 3.806 11 C 0.121 3.879 12 N -0.703 5.703 13 C 0.512 3.488 14 O -0.551 6.551 15 C -0.138 4.138 16 C -0.102 4.102 17 C 0.060 3.940 18 O -0.312 6.312 19 C 0.134 3.866 20 C -0.211 4.211 21 C -0.081 4.081 22 C -0.164 4.164 23 C -0.082 4.082 24 C -0.155 4.155 25 C -0.131 4.131 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.128 4.128 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.398 0.602 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.055 0.945 46 H 0.083 0.917 47 H 0.066 0.934 48 H 0.057 0.943 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.064 0.936 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.812 -1.003 15.753 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.712 3.288 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.109 0.891 9 N -0.379 5.379 10 C 0.103 3.897 11 C -0.005 4.005 12 N -0.352 5.352 13 C 0.297 3.703 14 O -0.430 6.430 15 C -0.179 4.179 16 C -0.140 4.140 17 C -0.015 4.015 18 O -0.225 6.225 19 C 0.088 3.912 20 C -0.230 4.230 21 C -0.099 4.099 22 C -0.182 4.182 23 C -0.100 4.100 24 C -0.174 4.174 25 C -0.171 4.171 26 C -0.156 4.156 27 C -0.159 4.159 28 C -0.166 4.166 29 H 0.069 0.931 30 H 0.194 0.806 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.232 0.768 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.074 0.926 46 H 0.102 0.898 47 H 0.085 0.915 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.083 0.917 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.093 -2.015 15.840 20.649 hybrid contribution 0.740 2.082 -0.253 2.224 sum 13.833 0.067 15.587 20.840 Atomic orbital electron populations 1.69700 1.05122 1.25723 1.57242 1.24668 0.95108 0.96986 1.02075 0.86630 0.79067 0.85424 0.77714 1.21270 1.21964 1.20430 1.18937 0.80442 0.94572 1.42831 0.89122 1.42892 1.04052 1.02052 1.88902 1.20428 0.89687 0.87665 0.91953 1.21848 1.01782 0.91247 0.85615 1.45711 1.61571 1.21503 1.06463 1.20313 0.78423 0.87358 0.84179 1.90681 1.43368 1.23803 1.85123 1.21507 1.03191 0.99963 0.93195 1.21209 1.04212 0.98530 0.90006 1.22893 0.98980 0.97007 0.82659 1.86088 1.78150 1.44526 1.13782 1.19089 0.94820 0.90689 0.86568 1.21323 1.06162 0.95550 0.99929 1.20968 0.97679 0.99195 0.92041 1.21061 1.02503 0.96648 0.98023 1.20971 0.97300 0.94308 0.97408 1.20495 1.05057 1.01772 0.90049 1.22797 0.99627 0.98300 0.96346 1.22407 0.94841 1.01034 0.97324 1.22301 0.97672 0.99701 0.96195 1.22454 0.95501 1.00436 0.98237 0.93082 0.80626 0.92982 0.90924 0.76788 0.89089 0.88521 0.89767 0.90085 0.91958 0.91733 0.85371 0.85862 0.86033 0.85450 0.85158 0.92580 0.89797 0.91521 0.92473 0.92351 0.92053 0.91718 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 13.97 55.49 0.78 -27.52 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 20.74 27.68 -169.99 -4.71 16.03 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -5.93 6.61 56.52 0.37 -5.55 16 7 C -0.24 -6.13 8.87 -15.06 -0.13 -6.26 16 8 H 0.09 2.59 7.46 -52.48 -0.39 2.20 16 9 N -0.74 -15.19 4.55 -46.20 -0.21 -15.40 16 10 C 0.19 3.28 0.68 -130.70 -0.09 3.20 16 11 C 0.12 2.14 3.99 -4.04 -0.02 2.12 16 12 N -0.70 -11.48 5.10 -60.29 -0.31 -11.79 16 13 C 0.51 8.49 7.83 -10.99 -0.09 8.41 16 14 O -0.55 -11.23 15.98 5.56 0.09 -11.14 16 15 C -0.14 -1.66 5.70 -27.88 -0.16 -1.82 16 16 C -0.10 -1.25 4.87 -26.73 -0.13 -1.38 16 17 C 0.06 0.62 4.74 37.16 0.18 0.80 16 18 O -0.31 -3.89 10.14 -19.44 -0.20 -4.09 16 19 C 0.13 1.53 6.69 -39.22 -0.26 1.27 16 20 C -0.21 -2.09 9.04 -39.43 -0.36 -2.45 16 21 C -0.08 -0.70 10.04 -39.60 -0.40 -1.10 16 22 C -0.16 -1.34 10.04 -39.56 -0.40 -1.74 16 23 C -0.08 -0.69 10.04 -39.61 -0.40 -1.09 16 24 C -0.16 -1.59 9.99 -39.43 -0.39 -1.98 16 25 C -0.13 -2.15 5.94 -25.07 -0.15 -2.30 16 26 C -0.12 -1.65 6.91 -24.74 -0.17 -1.82 16 27 C -0.12 -1.48 6.83 -25.10 -0.17 -1.66 16 28 C -0.13 -1.75 5.80 -25.65 -0.15 -1.90 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.36 7.34 5.21 -40.82 -0.21 7.13 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.55 7.50 -51.93 -0.39 1.16 16 33 H 0.40 5.92 7.99 -40.82 -0.33 5.60 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 37 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 39 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 40 H 0.13 1.09 6.30 -52.49 -0.33 0.76 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 45 H 0.06 0.85 7.85 -51.93 -0.41 0.44 16 46 H 0.08 1.63 7.11 -51.93 -0.37 1.26 16 47 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.06 0.88 7.44 -51.93 -0.39 0.50 16 52 H 0.06 0.80 7.55 -51.93 -0.39 0.41 16 LS Contribution 415.21 15.07 6.26 6.26 Total: -1.00 -32.51 415.21 -10.33 -42.84 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -8.66 Total: 14.38 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -3.38 Total: -9.58 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.26 Total: -54.71 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.11 Total: -15.23 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.71 Total: 16.03 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.51 -10.33 -42.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568246108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.866 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds