Wall clock time and date at job start Sat Apr 11 2020 08:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86795 * 119.99882 * 2 1 4 4 H 1.48505 * 109.46853 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47275 * 299.99959 * 3 2 1 6 6 H 1.48505 * 109.47472 * 60.00220 * 3 2 1 7 7 C 1.38807 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00133 * 34.47831 * 7 2 1 9 9 N 1.36934 * 119.99844 * 214.47890 * 7 2 1 10 10 C 1.47020 * 125.64874 * 25.70743 * 9 7 2 11 11 C 1.54342 * 107.26442 * 178.85000 * 10 9 7 12 12 C 1.55153 * 103.01803 * 338.13396 * 11 10 9 13 13 O 1.42898 * 111.00668 * 277.23416 * 12 11 10 14 14 C 1.53004 * 111.00118 * 153.38252 * 12 11 10 15 15 N 1.46497 * 109.47221 * 191.35012 * 14 12 11 16 16 C 1.34784 * 120.00271 * 180.02562 * 15 14 12 17 17 O 1.21279 * 119.99497 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99976 * 180.02562 * 16 15 14 19 19 C 1.52998 * 109.46623 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.46818 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47255 * 180.02562 * 20 19 18 22 22 C 1.50697 * 109.47558 * 180.02562 * 21 20 19 23 23 C 1.38239 * 119.99968 * 269.72837 * 22 21 20 24 24 C 1.38234 * 120.00149 * 179.76617 * 23 22 21 25 25 C 1.38236 * 119.99968 * 0.49897 * 24 23 22 26 26 C 1.38230 * 119.99789 * 359.75140 * 25 24 23 27 27 C 1.38236 * 120.00284 * 89.99351 * 22 21 20 28 28 C 1.47429 * 125.64813 * 206.01097 * 9 7 2 29 29 H 0.96993 * 119.99885 * 185.09107 * 1 2 3 30 30 H 1.08999 * 109.88065 * 298.38813 * 10 9 7 31 31 H 1.08993 * 109.88474 * 59.55622 * 10 9 7 32 32 H 1.09003 * 110.84664 * 219.67165 * 11 10 9 33 33 H 1.08996 * 110.51528 * 96.44615 * 11 10 9 34 34 H 0.96697 * 113.99807 * 173.65293 * 13 12 11 35 35 H 1.09004 * 109.47468 * 311.35187 * 14 12 11 36 36 H 1.08999 * 109.46930 * 71.34988 * 14 12 11 37 37 H 0.97003 * 120.00273 * 0.02562 * 15 14 12 38 38 H 1.08993 * 109.47035 * 299.99498 * 18 16 15 39 39 H 1.08997 * 109.46968 * 59.99753 * 18 16 15 40 40 H 1.08994 * 109.47569 * 299.99987 * 19 18 16 41 41 H 1.08997 * 109.47481 * 60.00274 * 19 18 16 42 42 H 1.09004 * 109.47412 * 299.99659 * 20 19 18 43 43 H 1.08999 * 109.47328 * 60.00076 * 20 19 18 44 44 H 1.09004 * 109.47124 * 299.99936 * 21 20 19 45 45 H 1.08999 * 109.47140 * 59.99655 * 21 20 19 46 46 H 1.08002 * 119.99578 * 359.97438 * 23 22 21 47 47 H 1.08001 * 119.99987 * 180.23258 * 24 23 22 48 48 H 1.07997 * 120.00179 * 179.72784 * 25 24 23 49 49 H 1.08010 * 120.00217 * 179.97438 * 26 25 24 50 50 H 1.08002 * 120.00172 * 0.02562 * 27 22 21 51 51 H 1.09003 * 110.36479 * 322.93047 * 28 9 7 52 52 H 1.08997 * 110.36352 * 85.25188 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 1.6125 -2.0551 -0.5304 9 7 3.1992 -1.3066 0.6708 10 6 3.6072 -0.4898 1.8231 11 6 5.0034 -0.9806 2.2611 12 6 5.0664 -2.4182 1.6808 13 8 4.4141 -3.3491 2.5468 14 6 6.5132 -2.8398 1.4160 15 7 6.5256 -4.0741 0.6272 16 6 7.6985 -4.6357 0.2727 17 8 8.7436 -4.1187 0.6064 18 6 7.7111 -5.9052 -0.5393 19 6 9.1579 -6.3267 -0.8039 20 6 9.1708 -7.6160 -1.6277 21 6 10.6175 -8.0380 -1.8919 22 6 10.6303 -9.3074 -2.7038 23 6 10.6379 -10.5347 -2.0676 24 6 10.6447 -11.6992 -2.8124 25 6 10.6545 -11.6365 -4.1933 26 6 10.6522 -10.4092 -4.8294 27 6 10.6401 -9.2447 -4.0847 28 6 4.2847 -2.2525 0.3537 29 1 -0.4849 -0.8367 0.0745 30 1 3.6550 0.5603 1.5348 31 1 2.8974 -0.6202 2.6398 32 1 5.0847 -0.9995 3.3479 33 1 5.7823 -0.3546 1.8258 34 1 4.3424 -4.2418 2.1821 35 1 7.0264 -2.0514 0.8653 36 1 7.0215 -3.0099 2.3651 37 1 5.6897 -4.4874 0.3600 38 1 7.1975 -6.6935 0.0109 39 1 7.2033 -5.7344 -1.4885 40 1 9.6712 -5.5383 -1.3542 41 1 9.6661 -6.4974 0.1451 42 1 8.6576 -8.4043 -1.0769 43 1 8.6626 -7.4458 -2.5768 44 1 11.1312 -7.2498 -2.4425 45 1 11.1255 -8.2082 -0.9426 46 1 10.6350 -10.5837 -0.9887 47 1 10.6468 -12.6581 -2.3154 48 1 10.6643 -12.5463 -4.7752 49 1 10.6602 -10.3601 -5.9083 50 1 10.6390 -8.2858 -4.5817 51 1 3.8725 -3.2097 0.0342 52 1 4.9330 -1.8405 -0.4196 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569755847.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:00:33 Heat of formation + Delta-G solvation = -56.264919 kcal Electronic energy + Delta-G solvation = -29107.674963 eV Core-core repulsion = 25071.814264 eV Total energy + Delta-G solvation = -4035.860699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.07587 -39.66056 -38.67820 -35.95428 -35.26664 -34.24887 -32.76246 -32.38094 -31.25472 -30.18604 -29.31322 -28.30622 -26.12950 -24.82184 -23.13507 -22.94232 -21.87216 -21.11843 -20.88864 -20.13194 -20.06461 -17.60754 -17.44491 -17.11823 -16.44662 -16.32216 -15.84702 -15.58537 -15.51384 -15.04765 -14.88002 -14.54593 -14.11417 -13.84560 -13.80485 -13.69131 -13.56075 -13.36303 -13.12626 -13.03350 -12.77506 -12.58643 -12.18081 -12.10628 -11.85460 -11.68984 -11.50561 -11.35417 -11.29698 -11.17492 -11.12686 -10.85660 -10.81208 -10.66656 -10.52052 -9.89879 -9.79166 -9.56415 -9.29435 -9.28666 -9.15959 -9.04440 -8.35460 -7.00543 -6.41528 -3.28439 0.98471 1.02747 2.55817 3.05671 3.41297 3.47092 3.52733 3.67140 4.30424 4.31662 4.43696 4.53160 4.58670 4.61514 4.64829 4.67617 4.71565 4.77143 4.93781 4.94500 5.08467 5.10200 5.14503 5.18750 5.20905 5.24689 5.38961 5.41336 5.45278 5.47917 5.65365 5.66150 5.68244 5.75436 5.76710 5.86557 5.92194 6.06719 6.08442 6.10196 6.14592 6.14874 6.26584 6.28393 6.35904 6.39534 6.64131 6.69851 6.85309 7.36133 7.79435 7.86657 8.12127 8.34399 8.95573 9.55388 10.28810 11.01064 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.018213 B = 0.001578 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.970055 B =17734.559662 C =18413.160734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.003 3.997 3 Si 1.035 2.965 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.292 1.292 7 C -0.344 4.344 8 H 0.067 0.933 9 N -0.595 5.595 10 C 0.126 3.874 11 C -0.114 4.114 12 C 0.102 3.898 13 O -0.539 6.539 14 C 0.105 3.895 15 N -0.729 5.729 16 C 0.512 3.488 17 O -0.544 6.544 18 C -0.142 4.142 19 C -0.103 4.103 20 C -0.113 4.113 21 C -0.083 4.083 22 C -0.079 4.079 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.118 4.118 28 C 0.110 3.890 29 H 0.268 0.732 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.368 0.632 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.400 0.600 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.121 0.879 51 H 0.041 0.959 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.107 -21.051 -4.189 30.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.201 4.201 3 Si 0.865 3.135 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.219 1.219 7 C -0.470 4.470 8 H 0.085 0.915 9 N -0.322 5.322 10 C 0.002 3.998 11 C -0.152 4.152 12 C 0.060 3.940 13 O -0.343 6.343 14 C -0.020 4.020 15 N -0.381 5.381 16 C 0.299 3.701 17 O -0.421 6.421 18 C -0.182 4.182 19 C -0.141 4.141 20 C -0.151 4.151 21 C -0.120 4.120 22 C -0.079 4.079 23 C -0.137 4.137 24 C -0.137 4.137 25 C -0.146 4.146 26 C -0.137 4.137 27 C -0.136 4.136 28 C -0.017 4.017 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.214 0.786 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.235 0.765 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.139 0.861 51 H 0.060 0.940 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 22.513 -18.497 -3.674 29.368 hybrid contribution -0.266 -2.309 -0.565 2.392 sum 22.247 -20.806 -4.239 30.753 Atomic orbital electron populations 1.70864 1.06759 1.29807 1.46053 1.26051 0.95936 1.00816 0.97304 0.84300 0.75752 0.76951 0.76504 1.20545 1.22470 1.21930 1.19771 0.95297 0.97839 1.34142 0.91528 1.44547 1.15204 1.41114 1.31357 1.21606 0.92531 0.94997 0.90703 1.22570 0.99154 0.92247 1.01250 1.22653 0.88795 0.90564 0.91989 1.86590 1.80848 1.22104 1.44777 1.21984 0.97402 0.86570 0.96009 1.46059 1.08809 1.27324 1.55948 1.20737 0.83429 0.86102 0.79876 1.90697 1.31822 1.64221 1.55350 1.21698 1.00089 0.95459 1.00942 1.21345 0.94744 0.97065 1.00988 1.21591 0.95857 0.97218 1.00426 1.20636 0.97589 0.94213 0.99553 1.19965 0.98897 0.95083 0.93953 1.21086 1.00661 0.92036 0.99902 1.21163 1.00060 0.98303 0.94180 1.21155 1.00895 0.97791 0.94771 1.21171 0.99982 0.92611 0.99899 1.21098 1.00554 0.98504 0.93486 1.22229 0.91035 0.95275 0.93125 0.92235 0.95054 0.94256 0.90225 0.90196 0.78618 0.90447 0.90737 0.76540 0.88867 0.88740 0.91060 0.91130 0.91714 0.91647 0.90788 0.90817 0.86105 0.86166 0.86252 0.86138 0.86059 0.94033 0.95334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.70 55.49 0.76 -26.79 16 2 C 0.00 0.09 5.29 -17.43 -0.09 -0.01 16 3 Si 1.03 25.92 26.22 -169.99 -4.46 21.46 16 4 H -0.28 -6.58 6.16 56.52 0.35 -6.23 16 5 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.34 -9.70 10.24 -15.06 -0.15 -9.86 16 8 H 0.07 1.98 8.06 -52.48 -0.42 1.56 16 9 N -0.60 -14.38 3.06 -170.06 -0.52 -14.90 16 10 C 0.13 2.78 6.03 -3.06 -0.02 2.76 16 11 C -0.11 -1.93 6.15 -24.89 -0.15 -2.08 16 12 C 0.10 1.61 0.95 -88.47 -0.08 1.52 16 13 O -0.54 -8.54 13.18 -35.23 -0.46 -9.00 16 14 C 0.10 1.40 4.97 -4.04 -0.02 1.38 16 15 N -0.73 -8.19 5.19 -60.29 -0.31 -8.50 16 16 C 0.51 6.01 7.83 -10.98 -0.09 5.93 16 17 O -0.54 -8.46 15.98 5.56 0.09 -8.38 16 18 C -0.14 -1.12 5.70 -27.88 -0.16 -1.28 16 19 C -0.10 -0.83 4.50 -26.73 -0.12 -0.95 16 20 C -0.11 -0.74 5.20 -26.73 -0.14 -0.88 16 21 C -0.08 -0.54 5.35 -27.88 -0.15 -0.69 16 22 C -0.08 -0.58 5.13 -104.62 -0.54 -1.12 16 23 C -0.12 -0.85 9.70 -39.58 -0.38 -1.23 16 24 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 25 C -0.13 -0.86 10.05 -39.58 -0.40 -1.25 16 26 C -0.12 -0.82 10.05 -39.58 -0.40 -1.21 16 27 C -0.12 -0.86 9.70 -39.58 -0.38 -1.25 16 28 C 0.11 2.08 5.74 -2.53 -0.01 2.06 16 29 H 0.27 8.12 8.73 -40.82 -0.36 7.77 16 30 H 0.03 0.72 3.84 -51.93 -0.20 0.52 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.21 7.94 -51.93 -0.41 0.80 16 34 H 0.37 4.39 8.58 45.56 0.39 4.78 16 35 H 0.08 1.09 8.00 -51.93 -0.42 0.67 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.40 3.73 7.32 -40.82 -0.30 3.43 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 41 H 0.07 0.63 8.10 -51.93 -0.42 0.20 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 45 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 46 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 47 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 48 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 49 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 50 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 51 H 0.04 0.75 7.80 -51.93 -0.41 0.34 16 52 H 0.03 0.55 8.04 -51.93 -0.42 0.13 16 LS Contribution 418.30 15.07 6.30 6.30 Total: -1.00 -34.90 418.30 -10.43 -45.33 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -8.14 Total: 3.84 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -3.69 Total: -9.36 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.07 Total: -50.19 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.38 Total: -17.38 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -4.46 Total: 21.46 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.90 -10.43 -45.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569755847.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.936 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds