Wall clock time and date at job start Sat Apr 11 2020 08:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86795 * 119.99882 * 2 1 4 4 H 1.48505 * 109.46853 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47275 * 299.99959 * 3 2 1 6 6 H 1.48505 * 109.47472 * 60.00220 * 3 2 1 7 7 C 1.38807 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00133 * 34.47831 * 7 2 1 9 9 N 1.36934 * 119.99844 * 214.47890 * 7 2 1 10 10 C 1.47020 * 125.64874 * 25.70743 * 9 7 2 11 11 C 1.54342 * 107.26442 * 178.85000 * 10 9 7 12 12 C 1.55153 * 103.01803 * 338.13396 * 11 10 9 13 13 O 1.42898 * 111.00668 * 277.23416 * 12 11 10 14 14 C 1.53004 * 111.00118 * 153.38252 * 12 11 10 15 15 N 1.46497 * 109.47221 * 191.35012 * 14 12 11 16 16 C 1.34784 * 120.00271 * 180.02562 * 15 14 12 17 17 O 1.21279 * 119.99497 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99976 * 180.02562 * 16 15 14 19 19 C 1.52998 * 109.46623 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.46818 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47255 * 180.02562 * 20 19 18 22 22 C 1.50697 * 109.47558 * 180.02562 * 21 20 19 23 23 C 1.38239 * 119.99968 * 269.72837 * 22 21 20 24 24 C 1.38234 * 120.00149 * 179.76617 * 23 22 21 25 25 C 1.38236 * 119.99968 * 0.49897 * 24 23 22 26 26 C 1.38230 * 119.99789 * 359.75140 * 25 24 23 27 27 C 1.38236 * 120.00284 * 89.99351 * 22 21 20 28 28 C 1.47429 * 125.64813 * 206.01097 * 9 7 2 29 29 H 0.96993 * 119.99885 * 185.09107 * 1 2 3 30 30 H 1.08999 * 109.88065 * 298.38813 * 10 9 7 31 31 H 1.08993 * 109.88474 * 59.55622 * 10 9 7 32 32 H 1.09003 * 110.84664 * 219.67165 * 11 10 9 33 33 H 1.08996 * 110.51528 * 96.44615 * 11 10 9 34 34 H 0.96697 * 113.99807 * 173.65293 * 13 12 11 35 35 H 1.09004 * 109.47468 * 311.35187 * 14 12 11 36 36 H 1.08999 * 109.46930 * 71.34988 * 14 12 11 37 37 H 0.97003 * 120.00273 * 0.02562 * 15 14 12 38 38 H 1.08993 * 109.47035 * 299.99498 * 18 16 15 39 39 H 1.08997 * 109.46968 * 59.99753 * 18 16 15 40 40 H 1.08994 * 109.47569 * 299.99987 * 19 18 16 41 41 H 1.08997 * 109.47481 * 60.00274 * 19 18 16 42 42 H 1.09004 * 109.47412 * 299.99659 * 20 19 18 43 43 H 1.08999 * 109.47328 * 60.00076 * 20 19 18 44 44 H 1.09004 * 109.47124 * 299.99936 * 21 20 19 45 45 H 1.08999 * 109.47140 * 59.99655 * 21 20 19 46 46 H 1.08002 * 119.99578 * 359.97438 * 23 22 21 47 47 H 1.08001 * 119.99987 * 180.23258 * 24 23 22 48 48 H 1.07997 * 120.00179 * 179.72784 * 25 24 23 49 49 H 1.08010 * 120.00217 * 179.97438 * 26 25 24 50 50 H 1.08002 * 120.00172 * 0.02562 * 27 22 21 51 51 H 1.09003 * 110.36479 * 322.93047 * 28 9 7 52 52 H 1.08997 * 110.36352 * 85.25188 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 1.6125 -2.0551 -0.5304 9 7 3.1992 -1.3066 0.6708 10 6 3.6072 -0.4898 1.8231 11 6 5.0034 -0.9806 2.2611 12 6 5.0664 -2.4182 1.6808 13 8 4.4141 -3.3491 2.5468 14 6 6.5132 -2.8398 1.4160 15 7 6.5256 -4.0741 0.6272 16 6 7.6985 -4.6357 0.2727 17 8 8.7436 -4.1187 0.6064 18 6 7.7111 -5.9052 -0.5393 19 6 9.1579 -6.3267 -0.8039 20 6 9.1708 -7.6160 -1.6277 21 6 10.6175 -8.0380 -1.8919 22 6 10.6303 -9.3074 -2.7038 23 6 10.6379 -10.5347 -2.0676 24 6 10.6447 -11.6992 -2.8124 25 6 10.6545 -11.6365 -4.1933 26 6 10.6522 -10.4092 -4.8294 27 6 10.6401 -9.2447 -4.0847 28 6 4.2847 -2.2525 0.3537 29 1 -0.4849 -0.8367 0.0745 30 1 3.6550 0.5603 1.5348 31 1 2.8974 -0.6202 2.6398 32 1 5.0847 -0.9995 3.3479 33 1 5.7823 -0.3546 1.8258 34 1 4.3424 -4.2418 2.1821 35 1 7.0264 -2.0514 0.8653 36 1 7.0215 -3.0099 2.3651 37 1 5.6897 -4.4874 0.3600 38 1 7.1975 -6.6935 0.0109 39 1 7.2033 -5.7344 -1.4885 40 1 9.6712 -5.5383 -1.3542 41 1 9.6661 -6.4974 0.1451 42 1 8.6576 -8.4043 -1.0769 43 1 8.6626 -7.4458 -2.5768 44 1 11.1312 -7.2498 -2.4425 45 1 11.1255 -8.2082 -0.9426 46 1 10.6350 -10.5837 -0.9887 47 1 10.6468 -12.6581 -2.3154 48 1 10.6643 -12.5463 -4.7752 49 1 10.6602 -10.3601 -5.9083 50 1 10.6390 -8.2858 -4.5817 51 1 3.8725 -3.2097 0.0342 52 1 4.9330 -1.8405 -0.4196 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569755847.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:00:32 Heat of formation + Delta-G solvation = -79.733068 kcal Electronic energy + Delta-G solvation = -29108.692618 eV Core-core repulsion = 25071.814264 eV Total energy + Delta-G solvation = -4036.878354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.12319 -40.19065 -39.93440 -36.91307 -36.47149 -35.32105 -34.38757 -33.33978 -31.73283 -31.71054 -30.34504 -29.42955 -27.49798 -25.78664 -24.56699 -23.42522 -22.72977 -22.33481 -21.62791 -21.43973 -21.17568 -19.56363 -18.53324 -17.61796 -17.59922 -17.10013 -17.02831 -16.50634 -16.37904 -16.20547 -15.99864 -15.57744 -15.42575 -15.06913 -14.99390 -14.72268 -14.40438 -14.30235 -14.23312 -14.00691 -13.75336 -13.50628 -13.26120 -13.12948 -13.03276 -12.87250 -12.68744 -12.55012 -12.33582 -12.23657 -12.08004 -11.87245 -11.80803 -11.65442 -11.64302 -11.41098 -11.32533 -11.04961 -10.81816 -10.50346 -10.14700 -9.79282 -9.54863 -9.05249 -8.64566 -5.47672 0.48446 0.52839 1.44795 1.51932 1.66067 1.70750 2.15511 2.54623 2.90659 2.91017 3.12028 3.32495 3.55199 3.73605 3.76729 3.83285 3.87880 3.95068 4.07313 4.13386 4.21066 4.32259 4.35285 4.39509 4.43146 4.53622 4.59721 4.66600 4.70145 4.71179 4.76383 4.78640 4.82751 4.84768 4.92697 4.93968 4.94839 5.09537 5.14256 5.19752 5.20764 5.24387 5.35424 5.35867 5.50588 5.61591 5.66289 5.71359 5.78061 6.15616 6.16789 6.48887 6.73625 6.80775 7.23105 7.48719 8.19240 8.75506 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.018213 B = 0.001578 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.970055 B =17734.559662 C =18413.160734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.052 4.052 3 Si 1.080 2.920 4 H -0.255 1.255 5 H -0.296 1.296 6 H -0.288 1.288 7 C -0.336 4.336 8 H 0.037 0.963 9 N -0.616 5.616 10 C 0.117 3.883 11 C -0.109 4.109 12 C 0.121 3.879 13 O -0.553 6.553 14 C 0.118 3.882 15 N -0.723 5.723 16 C 0.510 3.490 17 O -0.584 6.584 18 C -0.136 4.136 19 C -0.099 4.099 20 C -0.104 4.104 21 C -0.081 4.081 22 C -0.089 4.089 23 C -0.131 4.131 24 C -0.128 4.128 25 C -0.138 4.138 26 C -0.129 4.129 27 C -0.133 4.133 28 C 0.106 3.894 29 H 0.254 0.746 30 H 0.027 0.973 31 H 0.016 0.984 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.385 0.615 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.411 0.589 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.131 0.869 47 H 0.136 0.864 48 H 0.136 0.864 49 H 0.135 0.865 50 H 0.128 0.872 51 H 0.049 0.951 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.173 -22.010 -4.110 32.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.250 4.250 3 Si 0.905 3.095 4 H -0.180 1.180 5 H -0.224 1.224 6 H -0.214 1.214 7 C -0.464 4.464 8 H 0.054 0.946 9 N -0.343 5.343 10 C -0.008 4.008 11 C -0.147 4.147 12 C 0.079 3.921 13 O -0.360 6.360 14 C -0.007 4.007 15 N -0.376 5.376 16 C 0.299 3.701 17 O -0.465 6.465 18 C -0.175 4.175 19 C -0.137 4.137 20 C -0.141 4.141 21 C -0.118 4.118 22 C -0.089 4.089 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.156 4.156 26 C -0.147 4.147 27 C -0.151 4.151 28 C -0.019 4.019 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.234 0.766 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.247 0.753 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.149 0.851 47 H 0.154 0.846 48 H 0.154 0.846 49 H 0.153 0.847 50 H 0.146 0.854 51 H 0.067 0.933 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 24.596 -19.504 -3.601 31.596 hybrid contribution -0.920 -2.161 -0.591 2.422 sum 23.676 -21.665 -4.193 32.365 Atomic orbital electron populations 1.70970 1.07861 1.29019 1.49527 1.27141 0.95975 1.04212 0.97638 0.83689 0.75923 0.73277 0.76566 1.17967 1.22361 1.21431 1.19664 0.96874 0.96713 1.33147 0.94550 1.44621 1.15456 1.42307 1.31912 1.21723 0.95027 0.94731 0.89279 1.22603 0.96431 0.93072 1.02635 1.22395 0.89552 0.90364 0.89829 1.86563 1.81036 1.23348 1.45062 1.21719 0.95142 0.87381 0.96479 1.45997 1.09433 1.26659 1.55482 1.21372 0.82649 0.86731 0.79368 1.90686 1.33215 1.65535 1.57017 1.21748 1.00376 0.94056 1.01336 1.21276 0.94679 0.97275 1.00452 1.21495 0.95885 0.96493 1.00251 1.20614 0.97690 0.93958 0.99523 1.20100 0.99226 0.95445 0.94176 1.21309 1.00808 0.92177 1.00621 1.21446 0.99726 0.98992 0.94464 1.21449 1.00582 0.98473 0.95098 1.21439 0.99797 0.92662 1.00814 1.21306 1.00905 0.99126 0.93736 1.22424 0.90020 0.94235 0.95257 0.93680 0.95505 0.96557 0.88434 0.87858 0.76622 0.90721 0.90441 0.75262 0.86437 0.87038 0.92528 0.92182 0.91099 0.91433 0.90930 0.90675 0.85121 0.84584 0.84618 0.84740 0.85366 0.93250 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.97 13.70 21.65 0.30 -58.67 16 2 C -0.05 -3.05 5.29 84.86 0.45 -2.60 16 3 Si 1.08 52.42 26.22 68.60 1.80 54.22 16 4 H -0.25 -11.22 6.16 99.48 0.61 -10.60 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 7 C -0.34 -19.20 10.24 84.03 0.86 -18.34 16 8 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 9 N -0.62 -29.23 3.06 -691.96 -2.12 -31.35 16 10 C 0.12 4.98 6.03 86.74 0.52 5.50 16 11 C -0.11 -3.38 6.15 31.79 0.20 -3.19 16 12 C 0.12 3.46 0.95 -9.40 -0.01 3.45 16 13 O -0.55 -16.08 13.18 -148.98 -1.96 -18.04 16 14 C 0.12 2.79 4.97 86.38 0.43 3.22 16 15 N -0.72 -14.16 5.19 -463.05 -2.40 -16.56 16 16 C 0.51 10.80 7.83 87.66 0.69 11.49 16 17 O -0.58 -17.32 15.98 -3.03 -0.05 -17.37 16 18 C -0.14 -1.78 5.70 29.85 0.17 -1.61 16 19 C -0.10 -1.42 4.50 30.59 0.14 -1.29 16 20 C -0.10 -1.17 5.20 30.59 0.16 -1.01 16 21 C -0.08 -0.97 5.35 29.85 0.16 -0.81 16 22 C -0.09 -1.23 5.13 -19.87 -0.10 -1.34 16 23 C -0.13 -1.72 9.70 22.27 0.22 -1.51 16 24 C -0.13 -1.57 10.05 22.27 0.22 -1.35 16 25 C -0.14 -1.67 10.05 22.27 0.22 -1.44 16 26 C -0.13 -1.64 10.05 22.27 0.22 -1.41 16 27 C -0.13 -1.82 9.70 22.27 0.22 -1.60 16 28 C 0.11 3.79 5.74 86.85 0.50 4.29 16 29 H 0.25 16.12 8.73 -92.71 -0.81 15.31 16 30 H 0.03 1.18 3.84 -2.39 -0.01 1.17 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.10 2.74 7.94 -2.39 -0.02 2.72 16 34 H 0.38 8.09 8.58 -74.06 -0.64 7.46 16 35 H 0.07 1.87 8.00 -2.39 -0.02 1.85 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.41 6.33 7.32 -92.71 -0.68 5.66 16 38 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.11 1.14 8.14 -2.39 -0.02 1.13 16 40 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 41 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 42 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 45 H 0.07 0.87 8.08 -2.39 -0.02 0.85 16 46 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 47 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 48 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 49 H 0.13 1.20 8.06 -2.91 -0.02 1.18 16 50 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 51 H 0.05 1.68 7.80 -2.39 -0.02 1.66 16 52 H 0.04 1.25 8.04 -2.39 -0.02 1.23 16 Total: -1.00 -76.80 418.30 0.29 -76.51 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -0.54 Total: 20.80 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 5.26 Total: -9.55 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -4.23 Total: -106.58 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -2.01 Total: -35.41 kcal Atomic # 14 Polarization: 52.42 SS G_CDS: 1.80 Total: 54.22 kcal Total: -76.80 0.29 -76.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569755847.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.223 kcal (2) G-P(sol) polarization free energy of solvation -76.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds