Wall clock time and date at job start Sat Apr 11 2020 08:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00147 * 2 1 4 4 H 1.48503 * 109.47216 * 270.00555 * 3 2 1 5 5 H 1.48497 * 109.47081 * 30.00285 * 3 2 1 6 6 H 1.48496 * 109.47262 * 150.00134 * 3 2 1 7 7 C 1.38813 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00284 * 359.97438 * 7 2 1 9 9 N 1.36945 * 119.99961 * 179.97438 * 7 2 1 10 10 C 1.46490 * 120.00036 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47244 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47395 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47075 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.46913 * 304.99919 * 13 12 11 15 15 N 1.46499 * 109.47455 * 65.00270 * 13 12 11 16 16 C 1.34777 * 120.00199 * 205.00257 * 15 13 12 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 13 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 13 19 19 C 1.53178 * 109.54104 * 299.27504 * 18 16 15 20 20 C 1.53092 * 109.16226 * 183.15050 * 19 18 16 21 21 O 1.42908 * 109.41124 * 57.61522 * 20 19 18 22 22 C 1.42906 * 114.09178 * 298.83637 * 21 20 19 23 23 C 1.53091 * 109.41581 * 61.16661 * 22 21 20 24 24 C 1.50697 * 109.47091 * 185.00217 * 13 12 11 25 25 C 1.38241 * 120.00139 * 279.72760 * 24 13 12 26 26 C 1.38237 * 120.00074 * 179.78826 * 25 24 13 27 27 C 1.38238 * 119.99768 * 0.44178 * 26 25 24 28 28 C 1.38233 * 120.00116 * 359.81000 * 27 26 25 29 29 C 1.38235 * 120.00064 * 359.97438 * 28 27 26 30 30 H 0.97000 * 119.99815 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99339 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47443 * 60.00161 * 10 9 7 33 33 H 1.09005 * 109.47700 * 300.00128 * 10 9 7 34 34 H 1.09000 * 109.46874 * 60.00324 * 11 10 9 35 35 H 1.09000 * 109.47318 * 300.00353 * 11 10 9 36 36 H 1.09000 * 109.46867 * 60.00292 * 12 11 10 37 37 H 1.09000 * 109.47154 * 300.00426 * 12 11 10 38 38 H 0.97000 * 119.99484 * 24.99354 * 15 13 12 39 39 H 1.08999 * 109.54379 * 59.54044 * 18 16 15 40 40 H 1.08996 * 109.52537 * 303.05946 * 19 18 16 41 41 H 1.09004 * 109.51981 * 63.25326 * 19 18 16 42 42 H 1.08996 * 109.48152 * 297.62763 * 20 19 18 43 43 H 1.08998 * 109.48162 * 177.59419 * 20 19 18 44 44 H 1.08999 * 109.48550 * 301.17518 * 22 21 20 45 45 H 1.09007 * 109.48496 * 181.14836 * 22 21 20 46 46 H 1.08998 * 109.52431 * 182.48583 * 23 22 21 47 47 H 1.09004 * 109.52737 * 62.28768 * 23 22 21 48 48 H 1.07992 * 119.99770 * 359.97438 * 25 24 13 49 49 H 1.08001 * 119.99818 * 180.27169 * 26 25 24 50 50 H 1.07997 * 119.99683 * 179.83949 * 27 26 25 51 51 H 1.07996 * 120.00002 * 180.02562 * 28 27 26 52 52 H 1.08000 * 119.99532 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6164 -2.1914 -0.0024 12 6 6.3814 -3.5164 -0.0030 13 6 7.8856 -3.2368 -0.0036 14 1 8.1346 -2.5907 -0.8454 15 7 8.2597 -2.5740 1.2481 16 6 9.3576 -1.7937 1.2955 17 8 10.0361 -1.6406 0.3020 18 6 9.7458 -1.1169 2.5848 19 6 8.6216 -0.1755 3.0281 20 6 9.0571 0.5657 4.2949 21 8 10.2683 1.2784 4.0355 22 6 11.3674 0.4446 3.6627 23 6 11.0248 -0.3015 2.3706 24 6 8.6380 -4.5365 -0.1282 25 6 8.8273 -5.3350 0.9843 26 6 9.5137 -6.5294 0.8692 27 6 10.0188 -6.9209 -0.3566 28 6 9.8341 -6.1200 -1.4680 29 6 9.1438 -4.9277 -1.3538 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0014 32 1 3.8485 -3.0427 -0.8908 33 1 3.8491 -3.0424 0.8891 34 1 5.8804 -1.6195 0.8872 35 1 5.8791 -1.6201 -0.8928 36 1 6.1173 -4.0879 -0.8928 37 1 6.1188 -4.0880 0.8872 38 1 7.7171 -2.6967 2.0428 39 1 9.9177 -1.8694 3.3543 40 1 8.4167 0.5452 2.2366 41 1 7.7222 -0.7551 3.2363 42 1 9.2227 -0.1528 5.0976 43 1 8.2781 1.2684 4.5908 44 1 11.5633 -0.2754 4.4572 45 1 12.2529 1.0599 3.5033 46 1 11.8439 -0.9711 2.1084 47 1 10.8683 0.4167 1.5657 48 1 8.4363 -5.0271 1.9427 49 1 9.6578 -7.1552 1.7376 50 1 10.5573 -7.8527 -0.4459 51 1 10.2283 -6.4260 -2.4257 52 1 8.9999 -4.3019 -2.2221 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571345780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:00:53 Heat of formation + Delta-G solvation = -64.288776 kcal Electronic energy + Delta-G solvation = -30649.778248 eV Core-core repulsion = 26613.569609 eV Total energy + Delta-G solvation = -4036.208640 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.77314 -39.61842 -38.59189 -36.64586 -35.00784 -34.07699 -32.60342 -31.70249 -31.28811 -31.00758 -30.52430 -27.53087 -26.02835 -24.20712 -23.81188 -22.84666 -22.13294 -21.74058 -21.00416 -20.58742 -20.12204 -17.70434 -17.54592 -17.13093 -16.58099 -16.29854 -16.10877 -15.60259 -15.18210 -15.00938 -14.84524 -14.74866 -14.40903 -14.29112 -13.97769 -13.73161 -13.64579 -13.53460 -13.10825 -13.05770 -12.75063 -12.69667 -12.34496 -12.10144 -11.86990 -11.79567 -11.66313 -11.42217 -11.21484 -11.11742 -10.99381 -10.94955 -10.79215 -10.59220 -10.56678 -10.18101 -10.14217 -9.71464 -9.60761 -9.31581 -9.08395 -8.90607 -8.87214 -7.24433 -5.78088 -3.13667 1.15035 1.23109 2.45816 2.93626 3.36299 3.39771 3.44658 3.56899 3.62016 4.25354 4.35828 4.41515 4.48063 4.58165 4.63860 4.66994 4.77537 4.83914 4.85739 4.91984 4.94986 5.03956 5.09283 5.19695 5.21933 5.26140 5.30946 5.37385 5.37934 5.45830 5.49419 5.54751 5.68944 5.70516 5.76644 5.78622 5.84807 5.90286 5.94702 5.97594 6.02900 6.19428 6.23697 6.28086 6.32573 6.49964 6.71014 6.74481 6.81322 6.86500 7.29682 7.98372 8.04822 8.41180 9.20351 9.92846 10.12598 11.40408 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.006687 B = 0.003479 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4186.410024 B = 8047.359838 C =11541.898028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.758 5.758 10 C 0.158 3.842 11 C -0.128 4.128 12 C -0.117 4.117 13 C 0.185 3.815 14 H 0.097 0.903 15 N -0.719 5.719 16 C 0.522 3.478 17 O -0.534 6.534 18 C -0.109 4.109 19 C -0.150 4.150 20 C 0.063 3.937 21 O -0.382 6.382 22 C 0.061 3.939 23 C -0.135 4.135 24 C -0.088 4.088 25 C -0.106 4.106 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.120 4.120 29 C -0.104 4.104 30 H 0.260 0.740 31 H 0.360 0.640 32 H 0.026 0.974 33 H 0.025 0.975 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.401 0.599 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.100 0.900 44 H 0.050 0.950 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.121 0.879 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.136 -9.665 6.945 28.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.403 5.403 10 C 0.030 3.970 11 C -0.166 4.166 12 C -0.155 4.155 13 C 0.080 3.920 14 H 0.115 0.885 15 N -0.371 5.371 16 C 0.308 3.692 17 O -0.410 6.410 18 C -0.130 4.130 19 C -0.188 4.188 20 C -0.014 4.014 21 O -0.301 6.301 22 C -0.016 4.016 23 C -0.173 4.173 24 C -0.089 4.089 25 C -0.125 4.125 26 C -0.141 4.141 27 C -0.142 4.142 28 C -0.138 4.138 29 C -0.123 4.123 30 H 0.070 0.930 31 H 0.193 0.807 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.236 0.764 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.118 0.882 44 H 0.068 0.932 45 H 0.115 0.885 46 H 0.098 0.902 47 H 0.100 0.900 48 H 0.135 0.865 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.139 0.861 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 26.388 -9.428 6.234 28.706 hybrid contribution 0.178 0.679 0.305 0.765 sum 26.566 -8.749 6.539 28.723 Atomic orbital electron populations 1.69705 1.05112 1.25843 1.57608 1.24682 0.95252 0.97238 1.02038 0.86535 0.79139 0.84912 0.77844 1.21056 1.21685 1.20384 1.19071 0.80685 0.94734 1.43006 0.89259 1.42722 1.04069 1.02302 1.91206 1.20610 0.88532 0.89279 0.98538 1.21787 0.96338 0.96302 1.02218 1.21816 0.91200 0.98779 1.03732 1.19937 0.93843 0.90307 0.87904 0.88470 1.46063 1.28113 1.49297 1.13609 1.20516 0.80242 0.78201 0.90239 1.90703 1.51724 1.61977 1.36622 1.21383 0.97462 0.98247 0.95903 1.22232 0.97476 0.99209 0.99885 1.22586 0.87193 0.96417 0.95211 1.87969 1.19230 1.34117 1.88740 1.22623 0.89766 0.94296 0.94926 1.22020 0.96493 0.99721 0.99114 1.20219 0.98525 0.96333 0.93817 1.20893 0.99081 0.94357 0.98143 1.21111 0.98657 0.96681 0.97620 1.21133 1.00278 0.99746 0.93057 1.21127 0.99171 0.94802 0.98675 1.21032 0.97396 0.96641 0.97205 0.93045 0.80719 0.95592 0.95708 0.91998 0.91884 0.89886 0.91018 0.76429 0.88543 0.90064 0.89959 0.92913 0.88232 0.93162 0.88542 0.90245 0.90029 0.86462 0.86276 0.86321 0.86110 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.51 13.97 55.49 0.78 -28.73 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.89 22.23 27.73 -169.99 -4.71 17.52 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 7 C -0.25 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.76 -17.99 5.41 -59.91 -0.32 -18.32 16 10 C 0.16 2.93 6.26 -4.04 -0.03 2.90 16 11 C -0.13 -1.80 5.22 -26.73 -0.14 -1.94 16 12 C -0.12 -1.27 4.73 -26.73 -0.13 -1.40 16 13 C 0.18 1.98 2.17 -69.09 -0.15 1.83 16 14 H 0.10 1.22 7.44 -51.93 -0.39 0.83 16 15 N -0.72 -6.87 3.67 -54.94 -0.20 -7.07 16 16 C 0.52 5.83 7.11 -10.98 -0.08 5.75 16 17 O -0.53 -8.03 15.63 5.55 0.09 -7.94 16 18 C -0.11 -0.93 2.61 -91.59 -0.24 -1.17 16 19 C -0.15 -1.26 5.30 -26.59 -0.14 -1.40 16 20 C 0.06 0.50 6.84 37.21 0.25 0.76 16 21 O -0.38 -3.85 10.77 -35.23 -0.38 -4.23 16 22 C 0.06 0.48 6.84 37.20 0.25 0.73 16 23 C -0.14 -1.22 4.73 -26.59 -0.13 -1.35 16 24 C -0.09 -0.94 4.91 -104.62 -0.51 -1.45 16 25 C -0.11 -1.03 9.33 -39.58 -0.37 -1.40 16 26 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 27 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 28 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 29 C -0.10 -1.11 9.67 -39.58 -0.38 -1.49 16 30 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 31 H 0.36 8.36 5.53 -40.82 -0.23 8.14 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.40 2.99 8.13 -40.82 -0.33 2.66 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.58 7.71 -51.93 -0.40 0.18 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.90 8.02 -51.93 -0.42 0.48 16 48 H 0.12 0.95 7.71 -52.49 -0.40 0.55 16 49 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 50 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 51 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 52 H 0.12 1.21 8.04 -52.49 -0.42 0.79 16 LS Contribution 418.33 15.07 6.30 6.30 Total: -1.00 -35.23 418.33 -10.61 -45.83 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.92 Total: 7.95 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -3.23 Total: -11.31 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.25 Total: -54.12 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -0.29 Total: -12.17 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.23 -10.61 -45.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571345780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.457 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds