Wall clock time and date at job start Sat Apr 11 2020 08:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99826 * 2 1 4 4 H 1.48500 * 109.46932 * 270.00507 * 3 2 1 5 5 H 1.48506 * 109.46886 * 29.99763 * 3 2 1 6 6 H 1.48493 * 109.47183 * 150.00456 * 3 2 1 7 7 C 1.38807 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00621 * 359.97438 * 7 2 1 9 9 N 1.36946 * 119.99902 * 179.97438 * 7 2 1 10 10 C 1.46492 * 119.99899 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47261 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47545 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47081 * 180.02562 * 12 11 10 14 14 H 1.08999 * 109.47272 * 305.00502 * 13 12 11 15 15 N 1.46505 * 109.46932 * 65.00096 * 13 12 11 16 16 C 1.34777 * 119.99873 * 204.99315 * 15 13 12 17 17 O 1.21283 * 120.00058 * 0.02562 * 16 15 13 18 18 C 1.50694 * 120.00089 * 179.97438 * 16 15 13 19 19 C 1.53003 * 109.47260 * 180.02562 * 18 16 15 20 20 H 1.08995 * 109.86764 * 53.99564 * 19 18 16 21 21 C 1.54106 * 109.87847 * 175.00401 * 19 18 16 22 22 C 1.54804 * 104.18946 * 121.45577 * 21 19 18 23 23 C 1.55004 * 102.09200 * 20.87808 * 22 21 19 24 24 O 1.43745 * 109.87953 * 292.83191 * 19 18 16 25 25 C 1.50701 * 109.47092 * 185.00128 * 13 12 11 26 26 C 1.38232 * 119.99865 * 279.86635 * 25 13 12 27 27 C 1.38243 * 120.00069 * 179.97438 * 26 25 13 28 28 C 1.38235 * 119.99602 * 0.09581 * 27 26 25 29 29 C 1.38230 * 120.00326 * 359.97438 * 28 27 26 30 30 C 1.38234 * 120.00279 * 100.00169 * 25 13 12 31 31 H 0.96995 * 120.00417 * 359.97438 * 1 2 3 32 32 H 0.96995 * 119.99741 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.47500 * 60.00337 * 10 9 7 34 34 H 1.09000 * 109.47681 * 299.99974 * 10 9 7 35 35 H 1.09005 * 109.46759 * 59.99831 * 11 10 9 36 36 H 1.09003 * 109.47449 * 300.00890 * 11 10 9 37 37 H 1.08991 * 109.46764 * 60.00371 * 12 11 10 38 38 H 1.08999 * 109.46795 * 300.00247 * 12 11 10 39 39 H 0.96996 * 119.99972 * 25.00566 * 15 13 12 40 40 H 1.09000 * 109.47683 * 300.00532 * 18 16 15 41 41 H 1.09008 * 109.46879 * 60.00830 * 18 16 15 42 42 H 1.09005 * 110.48440 * 240.13161 * 21 19 18 43 43 H 1.09002 * 110.48903 * 2.64719 * 21 19 18 44 44 H 1.08999 * 110.91439 * 139.07679 * 22 21 19 45 45 H 1.09003 * 110.90986 * 262.68742 * 22 21 19 46 46 H 1.08996 * 110.61603 * 81.47867 * 23 22 21 47 47 H 1.09000 * 110.61823 * 204.31535 * 23 22 21 48 48 H 1.08001 * 120.00365 * 0.08909 * 26 25 13 49 49 H 1.08000 * 119.99728 * 180.36512 * 27 26 25 50 50 H 1.08000 * 119.99297 * 179.97438 * 28 27 26 51 51 H 1.08001 * 120.00350 * 179.97438 * 29 28 27 52 52 H 1.08008 * 119.99453 * 359.97438 * 30 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 6 5.6164 -2.1911 -0.0024 12 6 6.3815 -3.5161 -0.0030 13 6 7.8857 -3.2364 -0.0036 14 1 8.1348 -2.5902 -0.8454 15 7 8.2597 -2.5735 1.2482 16 6 9.3576 -1.7933 1.2957 17 8 10.0357 -1.6395 0.3020 18 6 9.7419 -1.1109 2.5831 19 6 11.0161 -0.2923 2.3658 20 1 10.8804 0.3882 1.5253 21 6 11.3482 0.5084 3.6400 22 6 12.7652 0.0250 4.0334 23 6 13.2929 -0.5560 2.6968 24 8 12.1248 -1.1715 2.1127 25 6 8.6383 -4.5361 -0.1281 26 6 8.8250 -5.3359 0.9838 27 6 9.5149 -6.5284 0.8695 28 6 10.0196 -6.9201 -0.3563 29 6 9.8341 -6.1197 -1.4680 30 6 9.1442 -4.9273 -1.3537 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3620 -0.0014 33 1 3.8486 -3.0425 -0.8908 34 1 3.8493 -3.0421 0.8891 35 1 5.8804 -1.6191 0.8872 36 1 5.8791 -1.6198 -0.8927 37 1 6.1175 -4.0876 -0.8927 38 1 6.1189 -4.0877 0.8872 39 1 7.7172 -2.6964 2.0429 40 1 8.9351 -0.4496 2.8989 41 1 9.9190 -1.8617 3.3534 42 1 11.3551 1.5776 3.4277 43 1 10.6325 0.2819 4.4303 44 1 13.3828 0.8595 4.3655 45 1 12.7136 -0.7481 4.8001 46 1 13.6692 0.2400 2.0543 47 1 14.0694 -1.2984 2.8809 48 1 8.4304 -5.0300 1.9415 49 1 9.6557 -7.1560 1.7371 50 1 10.5589 -7.8515 -0.4455 51 1 10.2288 -6.4255 -2.4256 52 1 8.9997 -4.3015 -2.2221 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571346401.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:01:01 Heat of formation + Delta-G solvation = -58.699667 kcal Electronic energy + Delta-G solvation = -30204.149864 eV Core-core repulsion = 26168.183587 eV Total energy + Delta-G solvation = -4035.966278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.48944 -39.64838 -38.64058 -36.53872 -34.93196 -32.92815 -32.47834 -32.00382 -31.31926 -30.92526 -30.48143 -27.62583 -26.49098 -24.15448 -22.84454 -22.59763 -22.07104 -21.51925 -20.96483 -20.69349 -20.32903 -17.61129 -17.47719 -17.08466 -16.50997 -16.31558 -16.03780 -15.66875 -15.45549 -14.79709 -14.70491 -14.51955 -14.37451 -13.97599 -13.94519 -13.71117 -13.50145 -13.33060 -13.00600 -12.83938 -12.72824 -12.34417 -12.29924 -12.05352 -12.03114 -11.75211 -11.56965 -11.44265 -11.33425 -11.13361 -11.06796 -10.97173 -10.92433 -10.54839 -10.52483 -10.12933 -9.90966 -9.82223 -9.59440 -9.20044 -8.98927 -8.89022 -8.77701 -7.22692 -5.76738 -3.12121 1.24610 1.32502 2.64259 3.06048 3.36826 3.40281 3.44867 3.58822 3.71347 4.17826 4.36371 4.53897 4.56519 4.59209 4.67951 4.70226 4.76643 4.85977 4.92160 4.96098 5.00628 5.08644 5.11047 5.20233 5.25831 5.32097 5.34851 5.39681 5.42303 5.46455 5.52397 5.53448 5.60531 5.65162 5.76333 5.78569 5.86966 5.93161 5.95570 6.03416 6.07866 6.26973 6.31620 6.36837 6.41162 6.59839 6.69098 6.74720 6.78306 6.90567 7.42939 8.00057 8.21303 8.42571 9.21902 9.94411 10.14386 11.41799 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.007469 B = 0.002920 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3747.686852 B = 9585.423677 C =12736.031951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.758 5.758 10 C 0.157 3.843 11 C -0.128 4.128 12 C -0.117 4.117 13 C 0.186 3.814 14 H 0.096 0.904 15 N -0.724 5.724 16 C 0.516 3.484 17 O -0.525 6.525 18 C -0.143 4.143 19 C 0.093 3.907 20 H 0.076 0.924 21 C -0.154 4.154 22 C -0.155 4.155 23 C 0.043 3.957 24 O -0.359 6.359 25 C -0.087 4.087 26 C -0.105 4.105 27 C -0.123 4.123 28 C -0.124 4.124 29 C -0.120 4.120 30 C -0.104 4.104 31 H 0.259 0.741 32 H 0.360 0.640 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.400 0.600 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.090 0.910 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.120 0.880 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.431 -7.544 7.568 30.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.030 3.970 11 C -0.166 4.166 12 C -0.155 4.155 13 C 0.081 3.919 14 H 0.114 0.886 15 N -0.376 5.376 16 C 0.303 3.697 17 O -0.400 6.400 18 C -0.183 4.183 19 C 0.035 3.965 20 H 0.094 0.906 21 C -0.192 4.192 22 C -0.193 4.193 23 C -0.034 4.034 24 O -0.277 6.277 25 C -0.088 4.088 26 C -0.123 4.123 27 C -0.141 4.141 28 C -0.143 4.143 29 C -0.138 4.138 30 C -0.123 4.123 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.235 0.765 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.108 0.892 48 H 0.135 0.865 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.138 0.862 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 28.663 -7.700 6.725 30.431 hybrid contribution 0.255 1.312 0.572 1.453 sum 28.917 -6.388 7.296 30.500 Atomic orbital electron populations 1.69702 1.05100 1.25813 1.57702 1.24684 0.95260 0.97237 1.02114 0.86526 0.79121 0.84925 0.77819 1.21066 1.21727 1.20401 1.19077 0.80703 0.94736 1.42860 0.89250 1.42728 1.04064 1.02337 1.91197 1.20616 0.88603 0.89235 0.98538 1.21784 0.96258 0.96374 1.02206 1.21810 0.91326 0.98706 1.03665 1.19901 0.93671 0.90296 0.88002 0.88559 1.46071 1.28252 1.49799 1.13527 1.20485 0.80106 0.78715 0.90437 1.90726 1.51010 1.61688 1.36548 1.21941 0.98413 1.01055 0.96879 1.22442 0.86510 0.90919 0.96637 0.90576 1.23045 0.97533 1.00755 0.97880 1.23132 0.96228 1.01366 0.98583 1.23540 0.89665 0.97694 0.92468 1.89021 1.16297 1.44259 1.78153 1.20219 0.98484 0.96292 0.93785 1.20883 0.98973 0.94323 0.98127 1.21100 0.98670 0.96737 0.97569 1.21114 1.00340 0.99741 0.93067 1.21109 0.99230 0.94849 0.98636 1.21020 0.97449 0.96595 0.97209 0.93070 0.80733 0.95583 0.95691 0.91978 0.91906 0.89970 0.91043 0.76528 0.87529 0.88246 0.90344 0.90115 0.90283 0.90523 0.92297 0.89168 0.86482 0.86340 0.86395 0.86185 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.60 13.97 55.49 0.78 -28.83 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 22.26 27.73 -169.99 -4.71 17.54 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 7 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 9 N -0.76 -18.17 5.41 -59.91 -0.32 -18.49 16 10 C 0.16 2.97 6.26 -4.05 -0.03 2.94 16 11 C -0.13 -1.84 5.22 -26.73 -0.14 -1.98 16 12 C -0.12 -1.33 4.73 -26.73 -0.13 -1.46 16 13 C 0.19 2.13 2.17 -69.08 -0.15 1.98 16 14 H 0.10 1.28 7.44 -51.93 -0.39 0.89 16 15 N -0.72 -7.46 3.77 -54.93 -0.21 -7.67 16 16 C 0.52 6.23 7.69 -10.99 -0.08 6.15 16 17 O -0.52 -8.53 15.17 -5.74 -0.09 -8.62 16 18 C -0.14 -1.25 5.19 -27.88 -0.14 -1.39 16 19 C 0.09 0.91 2.93 -26.15 -0.08 0.83 16 20 H 0.08 0.85 7.93 -51.93 -0.41 0.44 16 21 C -0.15 -1.04 6.64 -25.20 -0.17 -1.20 16 22 C -0.16 -0.96 7.15 -24.72 -0.18 -1.14 16 23 C 0.04 0.35 7.72 38.22 0.29 0.65 16 24 O -0.36 -4.29 10.58 -46.53 -0.49 -4.79 16 25 C -0.09 -1.01 4.91 -104.63 -0.51 -1.52 16 26 C -0.10 -1.12 9.32 -39.58 -0.37 -1.49 16 27 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 28 C -0.12 -1.23 10.05 -39.59 -0.40 -1.62 16 29 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 30 C -0.10 -1.21 9.67 -39.58 -0.38 -1.59 16 31 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 32 H 0.36 8.42 5.53 -40.82 -0.23 8.20 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.87 7.75 -51.93 -0.40 0.46 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.40 3.19 8.60 -40.82 -0.35 2.84 16 40 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.73 8.14 -51.92 -0.42 0.30 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.45 7.70 -51.93 -0.40 0.05 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.12 1.07 7.71 -52.49 -0.40 0.66 16 49 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 50 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 51 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 52 H 0.12 1.30 8.04 -52.48 -0.42 0.88 16 LS Contribution 422.04 15.07 6.36 6.36 Total: -1.00 -36.40 422.04 -11.14 -47.53 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -8.94 Total: 8.24 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -3.51 Total: -11.29 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.24 Total: -54.99 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.58 Total: -13.41 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -36.40 -11.14 -47.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571346401.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.167 kcal (2) G-P(sol) polarization free energy of solvation -36.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds