Wall clock time and date at job start Sat Apr 11 2020 07:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38233 * 120.00192 * 2 1 4 4 C 1.38237 * 119.99926 * 179.97438 * 3 2 1 5 5 C 1.38243 * 120.00010 * 359.97231 * 4 3 2 6 6 C 1.50693 * 120.00040 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47009 * 89.99969 * 6 5 4 8 8 N 1.46901 * 109.47363 * 179.97438 * 7 6 5 9 9 C 1.46898 * 111.00573 * 172.84106 * 8 7 6 10 10 C 1.50690 * 109.47463 * 194.12004 * 9 8 7 11 11 O 1.21291 * 120.00353 * 5.61343 * 10 9 8 12 12 N 1.34778 * 119.99886 * 185.60642 * 10 9 8 13 13 C 1.37106 * 119.99859 * 180.02562 * 12 10 9 14 14 H 1.07997 * 119.99961 * 359.97438 * 13 12 10 15 15 C 1.38949 * 119.99759 * 179.97438 * 13 12 10 16 16 N 1.31411 * 120.00341 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99669 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47306 * 60.00449 * 17 15 13 19 19 H 1.48499 * 109.47073 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47704 * 300.00312 * 17 15 13 21 21 C 1.46903 * 111.00053 * 296.80063 * 8 7 6 22 22 C 1.53005 * 109.46675 * 293.54347 * 21 8 7 23 23 H 1.08999 * 109.82600 * 305.17010 * 22 21 8 24 24 C 1.54379 * 109.90372 * 184.23319 * 22 21 8 25 25 C 1.55302 * 102.25511 * 219.08569 * 24 22 21 26 26 C 1.54945 * 100.93994 * 34.13461 * 25 24 22 27 27 O 1.43241 * 109.83012 * 66.05796 * 22 21 8 28 28 C 1.38232 * 119.99579 * 0.28038 * 5 4 3 29 29 C 1.38231 * 120.00490 * 359.51227 * 28 5 4 30 30 H 1.09004 * 109.47313 * 89.99773 * 1 2 3 31 31 H 1.08994 * 109.47672 * 210.00391 * 1 2 3 32 32 H 1.09000 * 109.46808 * 330.00624 * 1 2 3 33 33 H 1.07999 * 119.99915 * 359.97037 * 3 2 1 34 34 H 1.07995 * 120.00269 * 179.97438 * 4 3 2 35 35 H 1.09007 * 109.47067 * 330.00304 * 6 5 4 36 36 H 1.08996 * 109.47235 * 210.00363 * 6 5 4 37 37 H 1.08998 * 109.46915 * 60.00104 * 7 6 5 38 38 H 1.08999 * 109.47880 * 300.00024 * 7 6 5 39 39 H 1.08994 * 109.46879 * 314.12728 * 9 8 7 40 40 H 1.09006 * 109.46803 * 74.11617 * 9 8 7 41 41 H 0.96999 * 120.00360 * 359.97438 * 12 10 9 42 42 H 0.96993 * 120.00012 * 179.97438 * 16 15 13 43 43 H 1.09000 * 109.47280 * 173.54967 * 21 8 7 44 44 H 1.08995 * 109.47286 * 53.54240 * 21 8 7 45 45 H 1.09000 * 110.85426 * 337.27877 * 24 22 21 46 46 H 1.09007 * 110.84604 * 100.89796 * 24 22 21 47 47 H 1.09001 * 111.13130 * 276.21811 * 25 24 22 48 48 H 1.09000 * 111.16364 * 152.07182 * 25 24 22 49 49 H 1.08994 * 110.31269 * 204.63656 * 26 25 24 50 50 H 1.09005 * 110.30974 * 82.47045 * 26 25 24 51 51 H 1.08004 * 119.99619 * 179.72519 * 28 5 4 52 52 H 1.07997 * 120.00321 * 180.28060 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 5.7787 -0.0003 0.0028 7 6 6.2875 0.0004 1.4457 8 7 7.7565 -0.0003 1.4469 9 6 8.2820 0.1712 2.8079 10 6 9.7485 0.5113 2.7410 11 8 10.2785 0.7021 1.6669 12 7 10.4713 0.6035 3.8749 13 6 11.8055 0.9134 3.8141 14 1 12.2773 1.0832 2.8576 15 6 12.5504 1.0091 4.9831 16 7 11.9764 0.8020 6.1469 17 14 14.3683 1.4306 4.9002 18 1 14.5399 2.7575 4.2559 19 1 14.9304 1.4706 6.2741 20 1 15.0802 0.3984 4.1046 21 6 8.2829 -1.2251 0.8298 22 6 7.9264 -2.4299 1.7029 23 1 8.2842 -2.2683 2.7197 24 6 8.5650 -3.7088 1.1200 25 6 7.4493 -4.7657 1.3436 26 6 6.1799 -3.8996 1.1461 27 8 6.5067 -2.6204 1.7119 28 6 3.5805 -1.1972 -0.0036 29 6 2.1981 -1.1972 0.0002 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5137 33 1 1.6582 2.1324 -0.0005 34 1 4.1206 2.1323 0.0001 35 1 6.1425 0.8895 -0.5112 36 1 6.1424 -0.8905 -0.5103 37 1 5.9237 -0.8893 1.9596 38 1 5.9239 0.8906 1.9589 39 1 7.7443 0.9779 3.3060 40 1 8.1488 -0.7543 3.3681 41 1 10.0474 0.4514 4.7340 42 1 12.4965 0.8684 6.9629 43 1 9.3666 -1.1497 0.7396 44 1 7.8438 -1.3509 -0.1599 45 1 8.7768 -3.5872 0.0577 46 1 9.4682 -3.9761 1.6686 47 1 7.4924 -5.1751 2.3529 48 1 7.5036 -5.5590 0.5980 49 1 5.3345 -4.3416 1.6733 50 1 5.9531 -3.7971 0.0848 51 1 4.1204 -2.1326 -0.0072 52 1 1.6581 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174205781.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:52 Heat of formation + Delta-G solvation = -55.659878 kcal Electronic energy + Delta-G solvation = -31072.958220 eV Core-core repulsion = 27037.123758 eV Total energy + Delta-G solvation = -4035.834462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.09199 -39.37546 -38.21022 -36.46340 -34.08232 -33.65805 -32.22208 -31.19510 -30.94977 -30.52736 -29.78149 -27.31463 -26.13466 -24.92876 -23.66249 -22.73629 -22.07656 -21.64756 -20.87710 -19.95513 -18.91320 -17.77341 -17.05473 -16.50019 -16.15508 -15.83423 -15.55286 -15.21235 -14.98516 -14.68150 -14.51503 -14.13473 -13.94168 -13.87594 -13.57124 -13.48103 -13.42635 -13.18952 -12.89912 -12.68469 -12.48570 -12.28689 -12.25612 -11.81434 -11.56662 -11.50204 -11.42510 -11.26482 -11.15414 -11.01923 -10.99882 -10.91135 -10.87991 -10.71793 -10.42140 -10.32788 -10.17304 -9.66555 -9.43111 -8.94776 -8.52089 -8.29490 -7.91518 -7.57359 -6.37462 -3.78111 1.30361 1.38109 3.22117 3.27494 3.31852 3.67983 3.76123 3.97870 4.13200 4.33367 4.49862 4.73442 4.75063 4.76417 4.82081 4.97239 5.05301 5.08363 5.12967 5.13167 5.24802 5.29819 5.35186 5.37493 5.46200 5.47637 5.56984 5.58409 5.61123 5.63609 5.66362 5.73204 5.80473 5.84689 5.92222 5.96439 6.02139 6.05691 6.12690 6.19840 6.28475 6.33810 6.40183 6.45003 6.53034 6.53230 6.73363 6.99728 7.06565 7.43407 7.53256 7.58785 8.11356 8.67495 9.22902 9.60353 10.12942 10.80372 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.002530 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.709538 B =11066.645288 C =12405.358424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.121 4.121 4 C -0.113 4.113 5 C -0.073 4.073 6 C -0.072 4.072 7 C 0.052 3.948 8 N -0.508 5.508 9 C 0.040 3.960 10 C 0.446 3.554 11 O -0.577 6.577 12 N -0.567 5.567 13 C -0.297 4.297 14 H 0.102 0.898 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.929 3.071 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.047 3.953 22 C 0.037 3.963 23 H 0.084 0.916 24 C -0.146 4.146 25 C -0.155 4.155 26 C 0.046 3.954 27 O -0.368 6.368 28 C -0.107 4.107 29 C -0.122 4.122 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.055 0.945 51 H 0.120 0.880 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.802 -8.612 -9.865 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.139 4.139 4 C -0.132 4.132 5 C -0.074 4.074 6 C -0.109 4.109 7 C -0.075 4.075 8 N -0.230 5.230 9 C -0.091 4.091 10 C 0.231 3.769 11 O -0.460 6.460 12 N -0.205 5.205 13 C -0.427 4.427 14 H 0.120 0.880 15 C -0.180 4.180 16 N -0.545 5.545 17 Si 0.757 3.243 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.200 1.200 21 C -0.082 4.082 22 C -0.022 4.022 23 H 0.102 0.898 24 C -0.184 4.184 25 C -0.193 4.193 26 C -0.031 4.031 27 O -0.288 6.288 28 C -0.125 4.125 29 C -0.140 4.140 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.094 0.906 48 H 0.097 0.903 49 H 0.096 0.904 50 H 0.073 0.927 51 H 0.138 0.862 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.337 -7.892 -10.597 23.420 hybrid contribution 0.571 -0.732 1.097 1.438 sum -18.766 -8.625 -9.500 22.733 Atomic orbital electron populations 1.20760 0.91585 1.02532 1.02004 1.19865 0.95807 0.93352 1.00871 1.20988 0.94228 0.97320 1.01352 1.21106 0.94012 0.97904 1.00131 1.19929 0.95931 0.92940 0.98597 1.20543 0.89616 1.03010 0.97757 1.22341 0.87348 1.01793 0.95999 1.61754 1.06502 1.36055 1.18679 1.21927 0.95921 1.01053 0.90190 1.19808 0.87543 0.84483 0.85066 1.90497 1.72110 1.54790 1.28633 1.41885 1.09625 1.61826 1.07128 1.19631 0.84265 1.44070 0.94693 0.88043 1.25242 1.00439 0.97650 0.94688 1.69604 1.37290 1.49932 0.97656 0.85942 0.82144 0.79225 0.77035 1.19926 1.21047 1.19999 1.22734 1.02547 0.85830 0.97040 1.23730 0.80965 0.96304 1.01156 0.89819 1.23080 0.99046 0.94004 1.02261 1.23230 0.95047 0.98359 1.02665 1.23358 0.97288 0.84299 0.98111 1.88512 1.22252 1.34747 1.83297 1.21047 0.93826 0.97822 0.99818 1.20981 0.94256 0.97252 1.01515 0.91496 0.91787 0.91751 0.86426 0.86021 0.90742 0.91100 0.91144 0.91858 0.89573 0.93011 0.77571 0.91907 0.88018 0.90717 0.90383 0.89984 0.90603 0.90315 0.90362 0.92670 0.86197 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.10 -0.98 5.88 -104.62 -0.62 -1.59 16 3 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 4 C -0.11 -1.29 9.70 -39.58 -0.38 -1.67 16 5 C -0.07 -0.87 5.13 -104.63 -0.54 -1.41 16 6 C -0.07 -0.91 5.21 -27.89 -0.15 -1.06 16 7 C 0.05 0.75 4.48 -3.83 -0.02 0.74 16 8 N -0.51 -8.65 4.36 -236.08 -1.03 -9.68 16 9 C 0.04 0.75 5.25 -4.98 -0.03 0.72 16 10 C 0.45 10.55 7.43 -10.99 -0.08 10.47 16 11 O -0.58 -15.51 14.50 5.55 0.08 -15.43 16 12 N -0.57 -14.44 5.29 -10.97 -0.06 -14.50 16 13 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 14 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 15 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 16 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 17 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.05 0.74 4.56 -3.82 -0.02 0.72 16 22 C 0.04 0.51 3.20 -26.01 -0.08 0.43 16 23 H 0.08 1.31 5.91 -51.93 -0.31 1.00 16 24 C -0.15 -1.67 6.55 -24.79 -0.16 -1.83 16 25 C -0.16 -1.45 7.16 -24.48 -0.18 -1.63 16 26 C 0.05 0.45 7.78 38.18 0.30 0.75 16 27 O -0.37 -4.72 7.67 -35.23 -0.27 -4.99 16 28 C -0.11 -1.19 9.70 -39.59 -0.38 -1.57 16 29 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.07 0.99 8.09 -51.92 -0.42 0.57 16 36 H 0.07 0.89 6.28 -51.93 -0.33 0.57 16 37 H 0.07 1.04 4.97 -51.93 -0.26 0.78 16 38 H 0.06 0.92 7.95 -51.93 -0.41 0.51 16 39 H 0.09 1.50 7.89 -51.93 -0.41 1.09 16 40 H 0.05 0.90 5.64 -51.93 -0.29 0.61 16 41 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.10 1.92 6.49 -51.93 -0.34 1.58 16 44 H 0.07 1.08 6.09 -51.93 -0.32 0.76 16 45 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 46 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 52 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 410.13 15.07 6.18 6.18 Total: -1.00 -31.09 410.13 -10.76 -41.85 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -8.39 Total: 13.02 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -2.98 Total: -8.59 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.36 Total: -48.19 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.19 Total: -20.42 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.09 -10.76 -41.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174205781.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.808 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds