Wall clock time and date at job start Sat Apr 11 2020 07:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38233 * 120.00192 * 2 1 4 4 C 1.38237 * 119.99926 * 179.97438 * 3 2 1 5 5 C 1.38243 * 120.00010 * 359.97231 * 4 3 2 6 6 C 1.50693 * 120.00040 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47009 * 89.99969 * 6 5 4 8 8 N 1.46901 * 109.47363 * 179.97438 * 7 6 5 9 9 C 1.46898 * 111.00573 * 172.84106 * 8 7 6 10 10 C 1.50690 * 109.47463 * 194.12004 * 9 8 7 11 11 O 1.21291 * 120.00353 * 5.61343 * 10 9 8 12 12 N 1.34778 * 119.99886 * 185.60642 * 10 9 8 13 13 C 1.37106 * 119.99859 * 180.02562 * 12 10 9 14 14 H 1.07997 * 119.99961 * 359.97438 * 13 12 10 15 15 C 1.38949 * 119.99759 * 179.97438 * 13 12 10 16 16 N 1.31411 * 120.00341 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99669 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47306 * 60.00449 * 17 15 13 19 19 H 1.48499 * 109.47073 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47704 * 300.00312 * 17 15 13 21 21 C 1.46903 * 111.00053 * 296.80063 * 8 7 6 22 22 C 1.53005 * 109.46675 * 293.54347 * 21 8 7 23 23 H 1.08999 * 109.82600 * 305.17010 * 22 21 8 24 24 C 1.54379 * 109.90372 * 184.23319 * 22 21 8 25 25 C 1.55302 * 102.25511 * 219.08569 * 24 22 21 26 26 C 1.54945 * 100.93994 * 34.13461 * 25 24 22 27 27 O 1.43241 * 109.83012 * 66.05796 * 22 21 8 28 28 C 1.38232 * 119.99579 * 0.28038 * 5 4 3 29 29 C 1.38231 * 120.00490 * 359.51227 * 28 5 4 30 30 H 1.09004 * 109.47313 * 89.99773 * 1 2 3 31 31 H 1.08994 * 109.47672 * 210.00391 * 1 2 3 32 32 H 1.09000 * 109.46808 * 330.00624 * 1 2 3 33 33 H 1.07999 * 119.99915 * 359.97037 * 3 2 1 34 34 H 1.07995 * 120.00269 * 179.97438 * 4 3 2 35 35 H 1.09007 * 109.47067 * 330.00304 * 6 5 4 36 36 H 1.08996 * 109.47235 * 210.00363 * 6 5 4 37 37 H 1.08998 * 109.46915 * 60.00104 * 7 6 5 38 38 H 1.08999 * 109.47880 * 300.00024 * 7 6 5 39 39 H 1.08994 * 109.46879 * 314.12728 * 9 8 7 40 40 H 1.09006 * 109.46803 * 74.11617 * 9 8 7 41 41 H 0.96999 * 120.00360 * 359.97438 * 12 10 9 42 42 H 0.96993 * 120.00012 * 179.97438 * 16 15 13 43 43 H 1.09000 * 109.47280 * 173.54967 * 21 8 7 44 44 H 1.08995 * 109.47286 * 53.54240 * 21 8 7 45 45 H 1.09000 * 110.85426 * 337.27877 * 24 22 21 46 46 H 1.09007 * 110.84604 * 100.89796 * 24 22 21 47 47 H 1.09001 * 111.13130 * 276.21811 * 25 24 22 48 48 H 1.09000 * 111.16364 * 152.07182 * 25 24 22 49 49 H 1.08994 * 110.31269 * 204.63656 * 26 25 24 50 50 H 1.09005 * 110.30974 * 82.47045 * 26 25 24 51 51 H 1.08004 * 119.99619 * 179.72519 * 28 5 4 52 52 H 1.07997 * 120.00321 * 180.28060 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 5.7787 -0.0003 0.0028 7 6 6.2875 0.0004 1.4457 8 7 7.7565 -0.0003 1.4469 9 6 8.2820 0.1712 2.8079 10 6 9.7485 0.5113 2.7410 11 8 10.2785 0.7021 1.6669 12 7 10.4713 0.6035 3.8749 13 6 11.8055 0.9134 3.8141 14 1 12.2773 1.0832 2.8576 15 6 12.5504 1.0091 4.9831 16 7 11.9764 0.8020 6.1469 17 14 14.3683 1.4306 4.9002 18 1 14.5399 2.7575 4.2559 19 1 14.9304 1.4706 6.2741 20 1 15.0802 0.3984 4.1046 21 6 8.2829 -1.2251 0.8298 22 6 7.9264 -2.4299 1.7029 23 1 8.2842 -2.2683 2.7197 24 6 8.5650 -3.7088 1.1200 25 6 7.4493 -4.7657 1.3436 26 6 6.1799 -3.8996 1.1461 27 8 6.5067 -2.6204 1.7119 28 6 3.5805 -1.1972 -0.0036 29 6 2.1981 -1.1972 0.0002 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5137 33 1 1.6582 2.1324 -0.0005 34 1 4.1206 2.1323 0.0001 35 1 6.1425 0.8895 -0.5112 36 1 6.1424 -0.8905 -0.5103 37 1 5.9237 -0.8893 1.9596 38 1 5.9239 0.8906 1.9589 39 1 7.7443 0.9779 3.3060 40 1 8.1488 -0.7543 3.3681 41 1 10.0474 0.4514 4.7340 42 1 12.4965 0.8684 6.9629 43 1 9.3666 -1.1497 0.7396 44 1 7.8438 -1.3509 -0.1599 45 1 8.7768 -3.5872 0.0577 46 1 9.4682 -3.9761 1.6686 47 1 7.4924 -5.1751 2.3529 48 1 7.5036 -5.5590 0.5980 49 1 5.3345 -4.3416 1.6733 50 1 5.9531 -3.7971 0.0848 51 1 4.1204 -2.1326 -0.0072 52 1 1.6581 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174205781.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:51 Heat of formation + Delta-G solvation = -73.720289 kcal Electronic energy + Delta-G solvation = -31073.741378 eV Core-core repulsion = 27037.123758 eV Total energy + Delta-G solvation = -4036.617621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23216 -40.21092 -39.89255 -37.80657 -35.89176 -34.81458 -33.25784 -33.13593 -31.73656 -31.44395 -30.97287 -28.64880 -27.09997 -26.61624 -24.95887 -23.52770 -23.04585 -22.56025 -21.95970 -21.12314 -20.63557 -19.78093 -18.12876 -17.76324 -17.41319 -17.03089 -16.57256 -16.39301 -16.17294 -16.15455 -15.79406 -15.47424 -15.32737 -15.08003 -14.66579 -14.53096 -14.34378 -14.19878 -14.11150 -13.86099 -13.55356 -13.46577 -13.28823 -13.03011 -12.95863 -12.75609 -12.60444 -12.47936 -12.42009 -12.39353 -12.14737 -12.10830 -11.93935 -11.86194 -11.77435 -11.73789 -11.46239 -11.37788 -10.65561 -10.27116 -9.98792 -9.74784 -9.29296 -8.91713 -8.44561 -5.93270 0.49105 0.58050 1.39956 1.41356 1.52400 2.07557 2.28996 2.67620 2.88213 3.00241 3.21823 3.47874 3.63345 3.75161 3.90067 3.97222 4.00757 4.11796 4.17250 4.21363 4.22454 4.25631 4.36482 4.37712 4.45772 4.54217 4.58393 4.61351 4.69053 4.74369 4.79764 4.82527 4.87565 4.88259 4.91990 4.95017 5.02857 5.05148 5.08825 5.16372 5.24971 5.28532 5.35029 5.41308 5.42954 5.59893 5.77452 5.85153 5.92471 6.06357 6.18075 6.21880 6.27856 6.62898 7.14819 7.58611 8.14688 8.72742 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.002530 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.709538 B =11066.645288 C =12405.358424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.129 4.129 4 C -0.127 4.127 5 C -0.090 4.090 6 C -0.060 4.060 7 C 0.061 3.939 8 N -0.526 5.526 9 C 0.054 3.946 10 C 0.446 3.554 11 O -0.612 6.612 12 N -0.576 5.576 13 C -0.330 4.330 14 H 0.079 0.921 15 C -0.015 4.015 16 N -0.922 5.922 17 Si 0.992 3.008 18 H -0.273 1.273 19 H -0.271 1.271 20 H -0.271 1.271 21 C 0.053 3.947 22 C 0.046 3.954 23 H 0.061 0.939 24 C -0.147 4.147 25 C -0.146 4.146 26 C 0.040 3.960 27 O -0.378 6.378 28 C -0.113 4.113 29 C -0.128 4.128 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.134 0.866 34 H 0.122 0.878 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.394 0.606 42 H 0.277 0.723 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.102 0.898 49 H 0.095 0.905 50 H 0.068 0.932 51 H 0.127 0.873 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.636 -9.820 -10.077 25.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.147 4.147 4 C -0.145 4.145 5 C -0.090 4.090 6 C -0.097 4.097 7 C -0.066 4.066 8 N -0.248 5.248 9 C -0.078 4.078 10 C 0.233 3.767 11 O -0.497 6.497 12 N -0.214 5.214 13 C -0.459 4.459 14 H 0.097 0.903 15 C -0.214 4.214 16 N -0.563 5.563 17 Si 0.816 3.184 18 H -0.198 1.198 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.075 4.075 22 C -0.013 4.013 23 H 0.079 0.921 24 C -0.186 4.186 25 C -0.183 4.183 26 C -0.036 4.036 27 O -0.298 6.298 28 C -0.131 4.131 29 C -0.146 4.146 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.152 0.848 34 H 0.140 0.860 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.228 0.772 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.120 0.880 49 H 0.113 0.887 50 H 0.086 0.914 51 H 0.145 0.855 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.202 -9.114 -10.803 25.481 hybrid contribution 1.041 -0.366 1.114 1.568 sum -20.161 -9.480 -9.689 24.294 Atomic orbital electron populations 1.20809 0.89581 1.03442 1.02925 1.20250 0.97393 0.93055 0.99571 1.21243 0.93905 0.98480 1.01105 1.21241 0.94801 0.97854 1.00620 1.19872 0.95157 0.93715 1.00273 1.20380 0.90588 1.02441 0.96321 1.22309 0.85357 1.01651 0.97274 1.61725 1.08228 1.37225 1.17624 1.21756 0.92210 1.02066 0.91732 1.20677 0.89401 0.82612 0.83961 1.90468 1.73485 1.55929 1.29835 1.41947 1.09257 1.62433 1.07754 1.19611 0.85707 1.46232 0.94358 0.90261 1.26038 1.04494 0.96868 0.94028 1.69674 1.38809 1.49761 0.98098 0.84999 0.76947 0.78851 0.77604 1.19779 1.19570 1.19611 1.22583 1.00298 0.86463 0.98173 1.23429 0.82037 0.96524 0.99351 0.92134 1.23085 0.99453 0.93671 1.02349 1.23214 0.93492 0.98141 1.03473 1.23589 0.97937 0.83042 0.98994 1.88475 1.21146 1.36587 1.83604 1.21184 0.94497 0.97684 0.99782 1.21272 0.93999 0.98358 1.00929 0.90461 0.90771 0.91018 0.84821 0.86019 0.91877 0.91014 0.90947 0.92217 0.88252 0.91616 0.77247 0.91382 0.91640 0.89392 0.89715 0.90727 0.90597 0.87983 0.88736 0.91398 0.85519 0.84469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 71.24 0.71 -0.57 16 2 C -0.10 -1.80 5.88 -19.87 -0.12 -1.92 16 3 C -0.13 -2.48 9.70 22.27 0.22 -2.26 16 4 C -0.13 -2.81 9.70 22.27 0.22 -2.60 16 5 C -0.09 -2.07 5.13 -19.87 -0.10 -2.17 16 6 C -0.06 -1.51 5.21 29.84 0.16 -1.36 16 7 C 0.06 1.74 4.48 86.30 0.39 2.13 16 8 N -0.53 -18.26 4.36 -900.82 -3.93 -22.19 16 9 C 0.05 2.02 5.25 85.55 0.45 2.47 16 10 C 0.45 21.93 7.43 87.65 0.65 22.59 16 11 O -0.61 -34.38 14.50 -3.06 -0.04 -34.43 16 12 N -0.58 -30.36 5.29 -306.99 -1.62 -31.98 16 13 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 14 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 15 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 16 N -0.92 -50.62 13.05 21.66 0.28 -50.34 16 17 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 C 0.05 1.72 4.56 86.30 0.39 2.11 16 22 C 0.05 1.26 3.20 31.06 0.10 1.36 16 23 H 0.06 1.95 5.91 -2.39 -0.01 1.93 16 24 C -0.15 -3.28 6.55 31.85 0.21 -3.07 16 25 C -0.15 -2.41 7.16 32.05 0.23 -2.18 16 26 C 0.04 0.69 7.78 72.65 0.56 1.26 16 27 O -0.38 -9.23 7.67 -148.98 -1.14 -10.37 16 28 C -0.11 -2.33 9.70 22.27 0.22 -2.12 16 29 C -0.13 -2.29 9.70 22.27 0.22 -2.08 16 30 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 32 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 33 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 34 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.06 1.72 8.09 -2.38 -0.02 1.70 16 36 H 0.07 1.77 6.28 -2.39 -0.02 1.75 16 37 H 0.07 2.09 4.97 -2.39 -0.01 2.08 16 38 H 0.06 1.74 7.95 -2.39 -0.02 1.72 16 39 H 0.10 3.48 7.89 -2.39 -0.02 3.47 16 40 H 0.07 2.32 5.64 -2.38 -0.01 2.31 16 41 H 0.39 19.93 7.90 -92.71 -0.73 19.20 16 42 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 43 H 0.07 2.60 6.49 -2.39 -0.02 2.59 16 44 H 0.09 2.55 6.09 -2.39 -0.01 2.54 16 45 H 0.08 1.76 7.85 -2.39 -0.02 1.74 16 46 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 47 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 51 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 52 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -68.11 410.13 1.54 -66.57 By element: Atomic # 1 Polarization: 43.92 SS G_CDS: 0.19 Total: 44.11 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.78 Total: -6.90 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -5.27 Total: -104.51 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -1.19 Total: -44.80 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -68.11 1.54 -66.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174205781.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.150 kcal (2) G-P(sol) polarization free energy of solvation -68.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds