Wall clock time and date at job start Sat Apr 11 2020 07:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 120.00056 * 2 1 4 4 C 1.38211 * 120.00030 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99960 * 359.97438 * 4 3 2 6 6 C 1.38213 * 120.00114 * 359.96180 * 5 4 3 7 7 C 1.50695 * 119.99946 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47240 * 89.99670 * 7 6 5 9 9 O 1.42897 * 109.45909 * 64.99867 * 8 7 6 10 10 C 1.53043 * 109.46023 * 305.02391 * 8 7 6 11 11 C 1.53187 * 109.31100 * 178.59721 * 10 8 7 12 12 N 1.46921 * 108.76617 * 54.66177 * 11 10 8 13 13 C 1.34774 * 120.63413 * 126.35698 * 12 11 10 14 14 O 1.21595 * 119.99844 * 174.98643 * 13 12 11 15 15 N 1.34777 * 119.99935 * 354.98734 * 13 12 11 16 16 C 1.46501 * 120.00011 * 185.07103 * 15 13 12 17 17 C 1.52994 * 109.47309 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47518 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99660 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00308 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99951 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00003 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47256 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46995 * 120.00360 * 22 20 18 25 25 H 1.48499 * 109.47182 * 239.99832 * 22 20 18 26 26 C 1.46934 * 118.73627 * 306.37990 * 12 11 10 27 27 C 1.53044 * 109.46298 * 184.97182 * 8 7 6 28 28 C 1.38207 * 120.00072 * 180.20666 * 2 1 3 29 29 H 1.09002 * 109.46942 * 90.00153 * 1 2 3 30 30 H 1.08993 * 109.47068 * 210.00387 * 1 2 3 31 31 H 1.09005 * 109.47229 * 330.01138 * 1 2 3 32 32 H 1.08001 * 119.99885 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.99707 * 179.97438 * 4 3 2 34 34 H 1.08004 * 120.00134 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.47174 * 209.99661 * 7 6 5 36 36 H 1.09000 * 109.47176 * 329.99692 * 7 6 5 37 37 H 0.96698 * 114.00355 * 300.00166 * 9 8 7 38 38 H 1.08997 * 109.50020 * 298.56524 * 10 8 7 39 39 H 1.09007 * 109.49656 * 58.66538 * 10 8 7 40 40 H 1.08998 * 109.60678 * 294.87019 * 11 10 8 41 41 H 1.09008 * 109.70143 * 174.50911 * 11 10 8 42 42 H 0.96996 * 120.00276 * 5.07204 * 15 13 12 43 43 H 1.09002 * 109.47280 * 300.00100 * 16 15 13 44 44 H 1.09006 * 109.46885 * 59.99711 * 16 15 13 45 45 H 1.09002 * 109.47225 * 300.00371 * 17 16 15 46 46 H 1.09006 * 109.47190 * 60.00134 * 17 16 15 47 47 H 0.96996 * 120.00301 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.58560 * 293.82002 * 26 12 11 49 49 H 1.09005 * 109.70093 * 173.46736 * 26 12 11 50 50 H 1.08999 * 109.49154 * 301.33673 * 27 8 7 51 51 H 1.09004 * 109.49219 * 61.43131 * 27 8 7 52 52 H 1.07997 * 119.99931 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5806 -1.1970 0.0008 7 6 4.3341 -2.5020 0.0014 8 6 4.5901 -2.9425 1.4441 9 8 3.3439 -3.2251 2.0837 10 6 5.3085 -1.8221 2.1995 11 6 5.5317 -2.2529 3.6525 12 7 6.2434 -3.5382 3.6604 13 6 7.3857 -3.6864 4.3601 14 8 7.9165 -4.7780 4.4333 15 7 7.9396 -2.6248 4.9786 16 6 9.2371 -2.7603 5.6453 17 6 9.6361 -1.4183 6.2623 18 6 10.9705 -1.5578 6.9486 19 1 11.4829 -2.5085 6.9446 20 6 11.5376 -0.4715 7.5805 21 7 10.9139 0.6863 7.5848 22 14 13.1920 -0.6443 8.4306 23 1 13.6816 -2.0384 8.2822 24 1 14.1662 0.2905 7.8123 25 1 13.0436 -0.3221 9.8726 26 6 5.6863 -4.6589 2.8905 27 6 5.4610 -4.2010 1.4461 28 6 2.1981 -1.1969 -0.0043 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8901 0.5137 32 1 1.6583 2.1326 -0.0004 33 1 4.1204 2.1327 -0.0010 34 1 5.3517 0.0000 -0.0014 35 1 3.7448 -3.2621 -0.5114 36 1 5.2862 -2.3721 -0.5131 37 1 2.7397 -2.4709 2.1185 38 1 6.2703 -1.6232 1.7269 39 1 4.6982 -0.9191 2.1777 40 1 4.5698 -2.3648 4.1527 41 1 6.1279 -1.5019 4.1710 42 1 7.4793 -1.7711 4.9825 43 1 9.1659 -3.5142 6.4293 44 1 9.9897 -3.0632 4.9173 45 1 9.7075 -0.6647 5.4780 46 1 8.8836 -1.1150 6.9902 47 1 11.3126 1.4504 8.0297 48 1 4.7370 -4.9669 3.3285 49 1 6.3838 -5.4965 2.9037 50 1 4.9594 -4.9914 0.8879 51 1 6.4214 -3.9793 0.9806 52 1 1.6581 -2.1322 -0.0081 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280480888.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:58 Heat of formation + Delta-G solvation = -69.758920 kcal Electronic energy + Delta-G solvation = -30603.528534 eV Core-core repulsion = 26567.082691 eV Total energy + Delta-G solvation = -4036.445843 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.78047 -39.74756 -38.41428 -35.54238 -34.81476 -33.90200 -32.92709 -32.42610 -31.56505 -30.96727 -29.41582 -27.73614 -27.16094 -24.88115 -23.70791 -23.50705 -22.33810 -21.24585 -20.81496 -20.46681 -19.36132 -17.96443 -16.84995 -16.67590 -16.43216 -15.86591 -15.75961 -15.50583 -15.26036 -14.98809 -14.56142 -14.47165 -14.07399 -14.05702 -13.98005 -13.62891 -13.47245 -13.39107 -12.99586 -12.88187 -12.65999 -12.44128 -12.27828 -12.27167 -12.10033 -11.92266 -11.48291 -11.44076 -11.35405 -11.26199 -11.12028 -11.03034 -10.59929 -10.51165 -10.30211 -10.22855 -9.81527 -9.50639 -9.22205 -9.13919 -8.87343 -8.65428 -8.43644 -8.11521 -6.07920 -4.10163 0.97979 1.03159 2.98499 3.29472 3.36831 3.37052 3.42745 3.60565 3.93093 4.21855 4.26403 4.41513 4.45185 4.54209 4.55950 4.58191 4.74129 4.84274 4.93070 4.96542 5.02395 5.18298 5.20762 5.21935 5.29286 5.32293 5.36833 5.41511 5.45622 5.49605 5.51517 5.66118 5.74932 5.76287 5.80786 5.86507 5.87515 6.12982 6.15642 6.23371 6.27867 6.32172 6.43621 6.66989 6.69190 6.80754 7.05525 7.26343 7.38572 7.58579 7.65402 7.91696 8.27843 8.43073 8.95109 9.04468 9.54476 11.03859 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.013621 B = 0.002184 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.209402 B =12818.237411 C =14316.380554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.080 4.080 7 C -0.108 4.108 8 C 0.144 3.856 9 O -0.552 6.552 10 C -0.163 4.163 11 C 0.118 3.882 12 N -0.633 5.633 13 C 0.702 3.298 14 O -0.598 6.598 15 N -0.740 5.740 16 C 0.139 3.861 17 C 0.013 3.987 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.137 3.863 27 C -0.119 4.119 28 C -0.123 4.123 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.372 0.628 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.391 0.609 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.021 0.979 46 H 0.022 0.978 47 H 0.261 0.739 48 H 0.069 0.931 49 H 0.091 0.909 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.807 -0.505 -19.378 29.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.130 4.130 5 C -0.137 4.137 6 C -0.080 4.080 7 C -0.146 4.146 8 C 0.103 3.897 9 O -0.358 6.358 10 C -0.201 4.201 11 C -0.006 4.006 12 N -0.372 5.372 13 C 0.404 3.596 14 O -0.477 6.477 15 N -0.396 5.396 16 C 0.016 3.984 17 C -0.025 4.025 18 C -0.557 4.557 19 H 0.079 0.921 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 C 0.013 3.987 27 C -0.158 4.158 28 C -0.140 4.140 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.220 0.780 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.227 0.773 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.039 0.961 46 H 0.040 0.960 47 H 0.071 0.929 48 H 0.087 0.913 49 H 0.110 0.890 50 H 0.099 0.901 51 H 0.098 0.902 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.069 -1.724 -19.175 29.287 hybrid contribution 0.426 1.315 0.319 1.418 sum -21.644 -0.409 -18.857 28.709 Atomic orbital electron populations 1.20809 0.91210 1.02917 1.02329 1.19928 0.96066 0.93135 0.99262 1.21060 0.94325 0.97554 1.01321 1.21179 0.94311 0.98164 0.99376 1.21115 1.00051 0.91937 1.00590 1.19824 0.93676 0.94882 0.99666 1.21359 1.00898 0.94445 0.97892 1.21053 0.84370 0.94667 0.89578 1.86541 1.27423 1.40889 1.80954 1.22699 1.02032 0.98738 0.96650 1.21474 0.97424 0.85405 0.96248 1.47246 1.24926 1.12640 1.52339 1.15980 0.80009 0.84813 0.78838 1.90869 1.64398 1.25088 1.67302 1.45709 1.24001 1.11528 1.58330 1.21586 0.80518 1.01115 0.95152 1.19323 0.96995 0.90263 0.95871 1.21097 1.03883 0.96636 1.34115 0.92148 1.25001 0.97892 0.95222 0.96269 1.69965 1.38647 1.00865 1.43914 0.86455 0.83634 0.78294 0.79181 1.19558 1.20977 1.20954 1.21259 0.99094 0.89102 0.89227 1.21947 0.99036 0.96511 0.98264 1.20980 0.93449 0.97690 1.01931 0.91237 0.91395 0.91513 0.86223 0.85935 0.85950 0.89993 0.89918 0.78018 0.90410 0.90056 0.91152 0.90257 0.77286 0.92732 0.92913 0.96065 0.96018 0.92949 0.91299 0.89046 0.90120 0.90198 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.01 36.01 0.36 -0.21 16 2 C -0.08 -0.57 5.88 -104.63 -0.62 -1.19 16 3 C -0.12 -0.88 9.70 -39.58 -0.38 -1.27 16 4 C -0.11 -0.83 10.05 -39.59 -0.40 -1.23 16 5 C -0.12 -0.91 7.81 -39.58 -0.31 -1.22 16 6 C -0.08 -0.59 4.02 -104.63 -0.42 -1.01 16 7 C -0.11 -0.77 4.67 -27.88 -0.13 -0.90 16 8 C 0.14 1.21 0.73 -90.57 -0.07 1.14 16 9 O -0.55 -4.89 11.67 -35.23 -0.41 -5.30 16 10 C -0.16 -1.48 4.37 -26.61 -0.12 -1.60 16 11 C 0.12 1.34 6.19 -3.72 -0.02 1.32 16 12 N -0.63 -9.05 2.97 -178.50 -0.53 -9.58 16 13 C 0.70 13.14 8.30 -86.92 -0.72 12.42 16 14 O -0.60 -13.41 15.79 5.28 0.08 -13.33 16 15 N -0.74 -13.87 5.47 -65.22 -0.36 -14.23 16 16 C 0.14 3.09 5.62 -4.04 -0.02 3.07 16 17 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 18 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 19 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 22 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.14 1.72 6.17 -3.71 -0.02 1.69 16 27 C -0.12 -1.14 5.11 -26.61 -0.14 -1.28 16 28 C -0.12 -0.85 8.08 -39.59 -0.32 -1.16 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 31 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.12 0.87 8.03 -52.48 -0.42 0.45 16 35 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 37 H 0.37 2.63 7.27 45.56 0.33 2.96 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.67 6.04 -51.92 -0.31 0.36 16 40 H 0.07 0.76 7.81 -51.93 -0.41 0.36 16 41 H 0.08 0.91 5.56 -51.92 -0.29 0.62 16 42 H 0.39 6.46 5.93 -40.82 -0.24 6.22 16 43 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.07 0.85 7.81 -51.93 -0.41 0.45 16 49 H 0.09 1.30 7.04 -51.93 -0.37 0.93 16 50 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 409.62 15.07 6.17 6.17 Total: -1.00 -33.24 409.62 -11.19 -44.43 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.98 Total: 5.41 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -3.88 Total: -4.57 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -0.15 Total: -49.35 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.33 Total: -18.63 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.24 -11.19 -44.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280480888.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.333 kcal (2) G-P(sol) polarization free energy of solvation -33.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds