Wall clock time and date at job start Sat Apr 11 2020 07:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 120.00056 * 2 1 4 4 C 1.38211 * 120.00030 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99960 * 359.97438 * 4 3 2 6 6 C 1.38213 * 120.00114 * 359.96180 * 5 4 3 7 7 C 1.50695 * 119.99946 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47240 * 89.99670 * 7 6 5 9 9 O 1.42897 * 109.45909 * 64.99867 * 8 7 6 10 10 C 1.53043 * 109.46023 * 305.02391 * 8 7 6 11 11 C 1.53187 * 109.31100 * 178.59721 * 10 8 7 12 12 N 1.46921 * 108.76617 * 54.66177 * 11 10 8 13 13 C 1.34774 * 120.63413 * 126.35698 * 12 11 10 14 14 O 1.21595 * 119.99844 * 174.98643 * 13 12 11 15 15 N 1.34777 * 119.99935 * 354.98734 * 13 12 11 16 16 C 1.46501 * 120.00011 * 185.07103 * 15 13 12 17 17 C 1.52994 * 109.47309 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47518 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99660 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00308 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99951 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00003 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47256 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46995 * 120.00360 * 22 20 18 25 25 H 1.48499 * 109.47182 * 239.99832 * 22 20 18 26 26 C 1.46934 * 118.73627 * 306.37990 * 12 11 10 27 27 C 1.53044 * 109.46298 * 184.97182 * 8 7 6 28 28 C 1.38207 * 120.00072 * 180.20666 * 2 1 3 29 29 H 1.09002 * 109.46942 * 90.00153 * 1 2 3 30 30 H 1.08993 * 109.47068 * 210.00387 * 1 2 3 31 31 H 1.09005 * 109.47229 * 330.01138 * 1 2 3 32 32 H 1.08001 * 119.99885 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.99707 * 179.97438 * 4 3 2 34 34 H 1.08004 * 120.00134 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.47174 * 209.99661 * 7 6 5 36 36 H 1.09000 * 109.47176 * 329.99692 * 7 6 5 37 37 H 0.96698 * 114.00355 * 300.00166 * 9 8 7 38 38 H 1.08997 * 109.50020 * 298.56524 * 10 8 7 39 39 H 1.09007 * 109.49656 * 58.66538 * 10 8 7 40 40 H 1.08998 * 109.60678 * 294.87019 * 11 10 8 41 41 H 1.09008 * 109.70143 * 174.50911 * 11 10 8 42 42 H 0.96996 * 120.00276 * 5.07204 * 15 13 12 43 43 H 1.09002 * 109.47280 * 300.00100 * 16 15 13 44 44 H 1.09006 * 109.46885 * 59.99711 * 16 15 13 45 45 H 1.09002 * 109.47225 * 300.00371 * 17 16 15 46 46 H 1.09006 * 109.47190 * 60.00134 * 17 16 15 47 47 H 0.96996 * 120.00301 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.58560 * 293.82002 * 26 12 11 49 49 H 1.09005 * 109.70093 * 173.46736 * 26 12 11 50 50 H 1.08999 * 109.49154 * 301.33673 * 27 8 7 51 51 H 1.09004 * 109.49219 * 61.43131 * 27 8 7 52 52 H 1.07997 * 119.99931 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5806 -1.1970 0.0008 7 6 4.3341 -2.5020 0.0014 8 6 4.5901 -2.9425 1.4441 9 8 3.3439 -3.2251 2.0837 10 6 5.3085 -1.8221 2.1995 11 6 5.5317 -2.2529 3.6525 12 7 6.2434 -3.5382 3.6604 13 6 7.3857 -3.6864 4.3601 14 8 7.9165 -4.7780 4.4333 15 7 7.9396 -2.6248 4.9786 16 6 9.2371 -2.7603 5.6453 17 6 9.6361 -1.4183 6.2623 18 6 10.9705 -1.5578 6.9486 19 1 11.4829 -2.5085 6.9446 20 6 11.5376 -0.4715 7.5805 21 7 10.9139 0.6863 7.5848 22 14 13.1920 -0.6443 8.4306 23 1 13.6816 -2.0384 8.2822 24 1 14.1662 0.2905 7.8123 25 1 13.0436 -0.3221 9.8726 26 6 5.6863 -4.6589 2.8905 27 6 5.4610 -4.2010 1.4461 28 6 2.1981 -1.1969 -0.0043 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8901 0.5137 32 1 1.6583 2.1326 -0.0004 33 1 4.1204 2.1327 -0.0010 34 1 5.3517 0.0000 -0.0014 35 1 3.7448 -3.2621 -0.5114 36 1 5.2862 -2.3721 -0.5131 37 1 2.7397 -2.4709 2.1185 38 1 6.2703 -1.6232 1.7269 39 1 4.6982 -0.9191 2.1777 40 1 4.5698 -2.3648 4.1527 41 1 6.1279 -1.5019 4.1710 42 1 7.4793 -1.7711 4.9825 43 1 9.1659 -3.5142 6.4293 44 1 9.9897 -3.0632 4.9173 45 1 9.7075 -0.6647 5.4780 46 1 8.8836 -1.1150 6.9902 47 1 11.3126 1.4504 8.0297 48 1 4.7370 -4.9669 3.3285 49 1 6.3838 -5.4965 2.9037 50 1 4.9594 -4.9914 0.8879 51 1 6.4214 -3.9793 0.9806 52 1 1.6581 -2.1322 -0.0081 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280480888.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:57 Heat of formation + Delta-G solvation = -89.808838 kcal Electronic energy + Delta-G solvation = -30604.397964 eV Core-core repulsion = 26567.082691 eV Total energy + Delta-G solvation = -4037.315272 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.72289 -40.70272 -39.29633 -36.79043 -36.42048 -34.86905 -34.45652 -33.09132 -32.54703 -31.83857 -31.14479 -28.53107 -27.65976 -26.68854 -24.70635 -24.49024 -23.07647 -22.77966 -21.88542 -21.13166 -20.58545 -19.25446 -18.49996 -17.49472 -17.32996 -17.16736 -16.73342 -16.51901 -16.36336 -16.03927 -15.81237 -15.46379 -15.37734 -15.16655 -14.91901 -14.53027 -14.44692 -14.28373 -14.09758 -13.90469 -13.72668 -13.36525 -13.16553 -13.12521 -12.98341 -12.92786 -12.74996 -12.59240 -12.51570 -12.29085 -12.21982 -12.16890 -12.03251 -11.78933 -11.66531 -11.46531 -11.25163 -11.17561 -10.88474 -10.61270 -10.17389 -9.67038 -9.45664 -9.38319 -8.24344 -6.34480 0.45253 0.51302 1.41056 1.41815 1.55036 1.67764 2.11719 2.40706 2.84415 2.97428 3.10359 3.26465 3.58498 3.71450 3.86640 3.95056 4.02853 4.08369 4.14512 4.28943 4.32659 4.40560 4.44902 4.49687 4.51135 4.54551 4.62496 4.66396 4.71054 4.78755 4.84033 4.84848 4.86934 4.89460 4.96437 5.01605 5.04212 5.10339 5.25476 5.27891 5.31412 5.36736 5.49509 5.57729 5.58787 5.62815 5.72807 5.76032 5.78740 5.95353 6.16825 6.16938 6.78445 6.79698 6.97609 7.34695 7.54880 8.87872 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.013621 B = 0.002184 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.209402 B =12818.237411 C =14316.380554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.135 4.135 4 C -0.124 4.124 5 C -0.131 4.131 6 C -0.084 4.084 7 C -0.100 4.100 8 C 0.151 3.849 9 O -0.560 6.560 10 C -0.155 4.155 11 C 0.113 3.887 12 N -0.623 5.623 13 C 0.698 3.302 14 O -0.639 6.639 15 N -0.735 5.735 16 C 0.160 3.840 17 C 0.025 3.975 18 C -0.545 4.545 19 H 0.059 0.941 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.277 1.277 26 C 0.133 3.867 27 C -0.114 4.114 28 C -0.125 4.125 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.381 0.619 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.403 0.597 43 H 0.042 0.958 44 H 0.044 0.956 45 H 0.009 0.991 46 H 0.007 0.993 47 H 0.266 0.734 48 H 0.074 0.926 49 H 0.071 0.929 50 H 0.098 0.902 51 H 0.078 0.922 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.815 -0.231 -20.214 31.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.153 4.153 4 C -0.142 4.142 5 C -0.149 4.149 6 C -0.084 4.084 7 C -0.137 4.137 8 C 0.110 3.890 9 O -0.367 6.367 10 C -0.193 4.193 11 C -0.010 4.010 12 N -0.360 5.360 13 C 0.400 3.600 14 O -0.521 6.521 15 N -0.392 5.392 16 C 0.035 3.965 17 C -0.012 4.012 18 C -0.583 4.583 19 H 0.077 0.923 20 C -0.192 4.192 21 N -0.566 5.566 22 Si 0.791 3.209 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.202 1.202 26 C 0.011 3.989 27 C -0.152 4.152 28 C -0.143 4.143 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.230 0.770 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.241 0.759 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.027 0.973 46 H 0.025 0.975 47 H 0.075 0.925 48 H 0.092 0.908 49 H 0.090 0.910 50 H 0.117 0.883 51 H 0.097 0.903 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.139 -1.422 -20.043 30.645 hybrid contribution 0.630 1.254 0.553 1.508 sum -22.508 -0.169 -19.490 29.774 Atomic orbital electron populations 1.20840 0.89952 1.03537 1.02859 1.20197 0.97129 0.93040 0.98728 1.21293 0.94403 0.98333 1.01242 1.21371 0.94733 0.98554 0.99544 1.21229 1.00284 0.92268 1.01110 1.19847 0.93921 0.94717 0.99932 1.21260 1.01223 0.94553 0.96713 1.20932 0.84067 0.93574 0.90395 1.86520 1.27535 1.41602 1.81063 1.22648 1.02236 0.99541 0.94897 1.21703 0.97312 0.83820 0.98149 1.47302 1.23448 1.14289 1.50996 1.16107 0.80971 0.83921 0.79016 1.90836 1.65955 1.26534 1.68791 1.45425 1.23072 1.12389 1.58328 1.21090 0.81963 0.98864 0.94555 1.19115 0.95817 0.91299 0.94977 1.21479 1.05147 0.96848 1.34863 0.92311 1.25875 1.01721 0.94803 0.96815 1.70060 1.40349 1.01594 1.44558 0.85380 0.78932 0.78515 0.78121 1.19013 1.20128 1.20217 1.21389 0.98402 0.88120 0.91005 1.21916 0.99592 0.97712 0.96025 1.21134 0.93370 0.98211 1.01618 0.90686 0.90713 0.91003 0.85124 0.85217 0.85820 0.89235 0.89620 0.76985 0.90821 0.88800 0.90112 0.90519 0.75920 0.94004 0.93762 0.97265 0.97481 0.92525 0.90812 0.91030 0.88312 0.90319 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.01 71.24 0.71 -0.19 16 2 C -0.09 -1.08 5.88 -19.87 -0.12 -1.20 16 3 C -0.13 -1.72 9.70 22.27 0.22 -1.50 16 4 C -0.12 -1.70 10.05 22.27 0.22 -1.47 16 5 C -0.13 -1.82 7.81 22.27 0.17 -1.64 16 6 C -0.08 -1.07 4.02 -19.87 -0.08 -1.15 16 7 C -0.10 -1.19 4.67 29.85 0.14 -1.05 16 8 C 0.15 2.23 0.73 -10.76 -0.01 2.22 16 9 O -0.56 -8.57 11.67 -148.98 -1.74 -10.31 16 10 C -0.15 -2.57 4.37 30.67 0.13 -2.43 16 11 C 0.11 2.42 6.19 86.36 0.53 2.96 16 12 N -0.62 -17.56 2.97 -836.91 -2.49 -20.04 16 13 C 0.70 26.41 8.30 179.05 1.49 27.90 16 14 O -0.64 -29.31 15.79 -4.02 -0.06 -29.38 16 15 N -0.74 -27.92 5.47 -478.52 -2.62 -30.53 16 16 C 0.16 7.25 5.62 86.38 0.49 7.73 16 17 C 0.03 1.31 5.09 29.85 0.15 1.47 16 18 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 19 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 20 C 0.01 0.37 5.46 84.66 0.46 0.83 16 21 N -0.93 -54.51 13.29 21.45 0.28 -54.23 16 22 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 26 C 0.13 3.27 6.17 86.36 0.53 3.80 16 27 C -0.11 -2.00 5.11 30.67 0.16 -1.84 16 28 C -0.13 -1.47 8.08 22.27 0.18 -1.29 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.48 8.09 -2.39 -0.02 0.46 16 31 H 0.07 0.49 8.09 -2.38 -0.02 0.47 16 32 H 0.13 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.12 1.61 8.03 -2.91 -0.02 1.59 16 35 H 0.09 0.97 8.08 -2.39 -0.02 0.95 16 36 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 37 H 0.38 4.41 7.27 -74.06 -0.54 3.87 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.37 6.04 -2.38 -0.01 1.36 16 40 H 0.08 1.62 7.81 -2.39 -0.02 1.60 16 41 H 0.08 1.69 5.56 -2.38 -0.01 1.68 16 42 H 0.40 13.34 5.93 -92.71 -0.55 12.79 16 43 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.04 2.07 8.14 -2.38 -0.02 2.06 16 45 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 47 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 48 H 0.07 1.75 7.81 -2.39 -0.02 1.73 16 49 H 0.07 2.05 7.04 -2.38 -0.02 2.04 16 50 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 52 H 0.13 1.25 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -70.93 409.62 0.85 -70.08 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -0.17 Total: 25.92 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.62 Total: 2.44 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -4.82 Total: -104.80 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -1.80 Total: -39.68 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -70.93 0.85 -70.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280480888.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.732 kcal (2) G-P(sol) polarization free energy of solvation -70.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds