Wall clock time and date at job start Sat Apr 11 2020 07:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52998 * 109.47282 * 299.99654 * 6 5 4 8 8 C 1.53003 * 109.47218 * 59.99579 * 6 5 4 9 9 C 1.52999 * 109.47331 * 179.97438 * 6 5 4 10 10 N 1.46500 * 109.47528 * 179.97438 * 9 6 5 11 11 C 1.34773 * 120.00431 * 179.97438 * 10 9 6 12 12 O 1.21353 * 120.00045 * 0.02562 * 11 10 9 13 13 C 1.49452 * 119.99992 * 179.97438 * 11 10 9 14 14 O 1.21343 * 119.99955 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99621 * 180.02562 * 13 11 10 16 16 C 1.46505 * 119.99724 * 180.02562 * 15 13 11 17 17 C 1.52999 * 109.47192 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47306 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47245 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99567 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00010 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00269 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99958 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47072 * 89.99787 * 23 21 19 25 25 H 1.48497 * 109.46892 * 209.99969 * 23 21 19 26 26 H 1.48497 * 109.47079 * 329.99805 * 23 21 19 27 27 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 28 28 C 1.38234 * 120.00033 * 0.49775 * 27 5 4 29 29 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 30 30 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 31 31 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 32 32 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 34 34 H 1.08994 * 109.47122 * 59.99428 * 7 6 5 35 35 H 1.08990 * 109.47488 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46885 * 299.99961 * 7 6 5 37 37 H 1.08995 * 109.47325 * 59.99840 * 8 6 5 38 38 H 1.09003 * 109.47092 * 180.02562 * 8 6 5 39 39 H 1.09001 * 109.46873 * 299.99885 * 8 6 5 40 40 H 1.09001 * 109.47089 * 300.00304 * 9 6 5 41 41 H 1.09001 * 109.47054 * 59.99906 * 9 6 5 42 42 H 0.97000 * 119.99456 * 0.02562 * 10 9 6 43 43 H 0.97000 * 120.00483 * 0.02562 * 15 13 11 44 44 H 1.08995 * 109.46852 * 300.00269 * 16 15 13 45 45 H 1.09001 * 109.47048 * 60.00288 * 16 15 13 46 46 H 1.09001 * 109.47089 * 300.00487 * 17 16 15 47 47 H 1.09001 * 109.47054 * 60.00089 * 17 16 15 48 48 H 1.08995 * 109.46745 * 300.00070 * 18 17 16 49 49 H 1.09001 * 109.47042 * 60.00020 * 18 17 16 50 50 H 0.96995 * 120.00167 * 180.02562 * 22 21 19 51 51 H 1.07999 * 119.99934 * 180.25938 * 27 5 4 52 52 H 1.08001 * 120.00294 * 179.76453 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2840 0.7236 -1.2599 8 6 6.2934 0.7188 1.2385 9 6 6.2887 -1.4425 -0.0142 10 7 7.7537 -1.4426 -0.0204 11 6 8.4275 -2.6097 -0.0243 12 8 7.8208 -3.6607 -0.0232 13 6 9.9220 -2.6097 -0.0312 14 8 10.5287 -1.5588 -0.0328 15 7 10.5959 -3.7769 -0.0356 16 6 12.0609 -3.7769 -0.0418 17 6 12.5709 -5.2194 -0.0465 18 6 14.1009 -5.2194 -0.0523 19 6 14.6032 -6.6402 -0.0576 20 1 13.9013 -7.4611 -0.0566 21 6 15.9587 -6.8922 -0.0628 22 7 16.8134 -5.8926 -0.0637 23 14 16.5814 -8.6534 -0.0687 24 1 16.7415 -9.1171 -1.4703 25 1 17.8919 -8.7173 0.6267 26 1 15.6057 -9.5257 0.6329 27 6 3.5805 -1.1972 0.0010 28 6 2.1982 -1.1972 0.0009 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1325 0.0001 34 1 5.9206 1.7511 -1.2566 35 1 7.3739 0.7232 -1.2643 36 1 5.9173 0.2114 -2.1495 37 1 5.9335 0.2034 2.1289 38 1 7.3835 0.7192 1.2342 39 1 5.9301 1.7465 1.2418 40 1 5.9287 -1.9577 0.8763 41 1 5.9220 -1.9550 -0.9036 42 1 8.2386 -0.6025 -0.0209 43 1 10.1109 -4.6170 -0.0347 44 1 12.4204 -3.2619 -0.9325 45 1 12.4280 -3.2644 0.8474 46 1 12.2113 -5.7349 0.8440 47 1 12.2038 -5.7316 -0.9359 48 1 14.4608 -4.7039 -0.9426 49 1 14.4676 -4.7074 0.8373 50 1 17.7670 -6.0699 -0.0677 51 1 4.1205 -2.1325 0.0013 52 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286447686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:06 Heat of formation + Delta-G solvation = -76.522879 kcal Electronic energy + Delta-G solvation = -28905.687926 eV Core-core repulsion = 24868.948776 eV Total energy + Delta-G solvation = -4036.739150 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.92811 -40.19106 -38.61086 -37.37214 -35.68779 -34.13356 -33.28906 -31.95482 -31.41722 -31.24850 -27.89422 -27.72381 -27.23525 -26.71406 -24.38449 -22.87407 -22.54218 -21.95703 -20.78525 -20.30173 -19.66870 -18.41976 -17.14279 -16.54906 -16.25091 -16.16526 -15.99578 -15.39826 -15.25618 -15.22772 -14.84394 -14.50115 -14.45174 -14.13548 -14.08095 -13.94034 -13.81135 -13.55869 -13.55143 -12.97474 -12.68219 -12.31687 -12.31457 -12.23583 -12.18827 -11.89572 -11.80028 -11.77019 -11.68720 -11.48728 -11.13800 -10.94601 -10.91533 -10.76428 -10.60715 -9.90611 -9.79721 -9.50389 -9.38195 -9.28868 -9.13584 -8.98530 -8.88450 -8.38180 -6.02948 -4.05992 0.92361 1.02184 1.41786 2.32897 3.22398 3.31035 3.33247 3.37438 3.40545 3.64531 4.05197 4.15247 4.43548 4.45777 4.49089 4.51206 4.52146 4.61266 4.68750 4.93264 5.03823 5.14711 5.15789 5.19613 5.27381 5.28422 5.33140 5.34205 5.41832 5.45440 5.50468 5.58954 5.67114 5.68715 5.70072 5.75187 5.82520 5.93545 6.07597 6.08544 6.20385 6.21426 6.26487 6.53665 6.61297 6.68628 6.90346 6.94828 7.39380 7.61367 7.71463 7.73008 7.95358 8.04501 8.36673 9.00512 9.58493 11.08335 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.031052 B = 0.001419 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.504243 B =19732.116411 C =20421.344647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.119 4.119 4 C -0.107 4.107 5 C -0.072 4.072 6 C -0.035 4.035 7 C -0.143 4.143 8 C -0.143 4.143 9 C 0.126 3.874 10 N -0.702 5.702 11 C 0.508 3.492 12 O -0.520 6.520 13 C 0.500 3.500 14 O -0.527 6.527 15 N -0.691 5.691 16 C 0.114 3.886 17 C -0.123 4.123 18 C 0.024 3.976 19 C -0.523 4.523 20 H 0.056 0.944 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 C -0.117 4.117 28 C -0.116 4.116 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.412 0.588 43 H 0.411 0.589 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.020 0.980 49 H 0.020 0.980 50 H 0.261 0.739 51 H 0.128 0.872 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.671 16.928 0.137 36.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.125 4.125 5 C -0.073 4.073 6 C -0.036 4.036 7 C -0.200 4.200 8 C -0.200 4.200 9 C 0.002 3.998 10 N -0.357 5.357 11 C 0.289 3.711 12 O -0.396 6.396 13 C 0.280 3.720 14 O -0.404 6.404 15 N -0.343 5.343 16 C -0.008 4.008 17 C -0.161 4.161 18 C -0.013 4.013 19 C -0.561 4.561 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.135 4.135 28 C -0.134 4.134 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.250 0.750 43 H 0.247 0.753 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.038 0.962 49 H 0.038 0.962 50 H 0.071 0.929 51 H 0.146 0.854 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -32.461 16.951 0.142 36.621 hybrid contribution 0.437 -0.956 -0.019 1.051 sum -32.024 15.995 0.123 35.797 Atomic orbital electron populations 1.20799 0.91279 1.02779 1.02337 1.19949 0.96088 0.93264 0.99791 1.21006 0.94084 0.97528 1.01107 1.20916 0.93989 0.97504 1.00114 1.19560 0.93727 0.93463 1.00524 1.19706 0.91654 0.94861 0.97350 1.21940 1.01351 1.00463 0.96249 1.21946 1.01308 1.00497 0.96266 1.21630 0.78850 0.96222 1.03056 1.45800 1.07313 1.09065 1.73479 1.20337 0.88852 0.84320 0.77620 1.90762 1.70005 1.31023 1.47776 1.20001 0.87849 0.85130 0.79047 1.90754 1.69712 1.31011 1.48932 1.46073 1.08971 1.08260 1.70959 1.21848 0.75991 1.00469 1.02538 1.21930 1.00934 0.91907 1.01321 1.19031 0.87119 0.97465 0.97716 1.21203 0.91659 0.92299 1.50978 0.92569 1.25016 0.97047 0.97102 0.95212 1.69960 1.02096 1.30680 1.50567 0.86578 0.78246 0.84965 0.78121 1.20646 1.21199 1.19863 1.21212 0.94302 0.97949 1.00058 1.21050 0.94126 0.97613 1.00647 0.91186 0.91527 0.91597 0.86139 0.86002 0.91765 0.91818 0.91966 0.91958 0.91822 0.91770 0.90478 0.90488 0.74990 0.75300 0.91082 0.91077 0.92423 0.92421 0.96199 0.96184 0.92922 0.85433 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 10.01 36.01 0.36 -0.16 16 2 C -0.09 -0.60 5.88 -104.62 -0.62 -1.22 16 3 C -0.12 -0.76 9.70 -39.58 -0.38 -1.15 16 4 C -0.11 -0.70 8.71 -39.58 -0.34 -1.04 16 5 C -0.07 -0.51 4.76 -104.63 -0.50 -1.01 16 6 C -0.04 -0.23 0.61 -155.66 -0.10 -0.33 16 7 C -0.14 -0.87 8.11 37.16 0.30 -0.57 16 8 C -0.14 -0.87 8.11 37.16 0.30 -0.57 16 9 C 0.13 1.03 3.22 -4.04 -0.01 1.02 16 10 N -0.70 -6.91 4.95 -60.73 -0.30 -7.21 16 11 C 0.51 6.57 7.89 -11.59 -0.09 6.48 16 12 O -0.52 -7.68 16.48 5.49 0.09 -7.59 16 13 C 0.50 7.40 7.89 -11.58 -0.09 7.30 16 14 O -0.53 -8.80 16.48 5.50 0.09 -8.71 16 15 N -0.69 -10.32 5.55 -60.73 -0.34 -10.65 16 16 C 0.11 1.94 5.67 -4.04 -0.02 1.92 16 17 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 18 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 19 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 20 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 23 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 C -0.12 -0.87 8.98 -39.58 -0.36 -1.22 16 28 C -0.12 -0.82 9.70 -39.58 -0.38 -1.20 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 31 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 32 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.12 0.62 7.10 -52.49 -0.37 0.24 16 34 H 0.06 0.33 7.39 -51.93 -0.38 -0.05 16 35 H 0.06 0.40 6.86 -51.93 -0.36 0.04 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.39 6.86 -51.93 -0.36 0.04 16 39 H 0.06 0.33 7.39 -51.93 -0.38 -0.05 16 40 H 0.08 0.66 7.50 -51.93 -0.39 0.27 16 41 H 0.08 0.66 7.52 -51.93 -0.39 0.27 16 42 H 0.41 3.69 5.63 -40.82 -0.23 3.46 16 43 H 0.41 5.62 7.94 -40.82 -0.32 5.29 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 51 H 0.13 0.89 5.90 -52.49 -0.31 0.58 16 52 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 423.39 15.07 6.38 6.38 Total: -1.00 -32.26 423.39 -9.51 -41.78 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.53 Total: 2.58 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -2.62 Total: -7.13 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.10 Total: -43.76 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: 0.18 Total: -16.30 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -32.26 -9.51 -41.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286447686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.748 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds