Wall clock time and date at job start Sat Apr 11 2020 07:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52998 * 109.47282 * 299.99654 * 6 5 4 8 8 C 1.53003 * 109.47218 * 59.99579 * 6 5 4 9 9 C 1.52999 * 109.47331 * 179.97438 * 6 5 4 10 10 N 1.46500 * 109.47528 * 179.97438 * 9 6 5 11 11 C 1.34773 * 120.00431 * 179.97438 * 10 9 6 12 12 O 1.21353 * 120.00045 * 0.02562 * 11 10 9 13 13 C 1.49452 * 119.99992 * 179.97438 * 11 10 9 14 14 O 1.21343 * 119.99955 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99621 * 180.02562 * 13 11 10 16 16 C 1.46505 * 119.99724 * 180.02562 * 15 13 11 17 17 C 1.52999 * 109.47192 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47306 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47245 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99567 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00010 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00269 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99958 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47072 * 89.99787 * 23 21 19 25 25 H 1.48497 * 109.46892 * 209.99969 * 23 21 19 26 26 H 1.48497 * 109.47079 * 329.99805 * 23 21 19 27 27 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 28 28 C 1.38234 * 120.00033 * 0.49775 * 27 5 4 29 29 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 30 30 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 31 31 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 32 32 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 34 34 H 1.08994 * 109.47122 * 59.99428 * 7 6 5 35 35 H 1.08990 * 109.47488 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46885 * 299.99961 * 7 6 5 37 37 H 1.08995 * 109.47325 * 59.99840 * 8 6 5 38 38 H 1.09003 * 109.47092 * 180.02562 * 8 6 5 39 39 H 1.09001 * 109.46873 * 299.99885 * 8 6 5 40 40 H 1.09001 * 109.47089 * 300.00304 * 9 6 5 41 41 H 1.09001 * 109.47054 * 59.99906 * 9 6 5 42 42 H 0.97000 * 119.99456 * 0.02562 * 10 9 6 43 43 H 0.97000 * 120.00483 * 0.02562 * 15 13 11 44 44 H 1.08995 * 109.46852 * 300.00269 * 16 15 13 45 45 H 1.09001 * 109.47048 * 60.00288 * 16 15 13 46 46 H 1.09001 * 109.47089 * 300.00487 * 17 16 15 47 47 H 1.09001 * 109.47054 * 60.00089 * 17 16 15 48 48 H 1.08995 * 109.46745 * 300.00070 * 18 17 16 49 49 H 1.09001 * 109.47042 * 60.00020 * 18 17 16 50 50 H 0.96995 * 120.00167 * 180.02562 * 22 21 19 51 51 H 1.07999 * 119.99934 * 180.25938 * 27 5 4 52 52 H 1.08001 * 120.00294 * 179.76453 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2840 0.7236 -1.2599 8 6 6.2934 0.7188 1.2385 9 6 6.2887 -1.4425 -0.0142 10 7 7.7537 -1.4426 -0.0204 11 6 8.4275 -2.6097 -0.0243 12 8 7.8208 -3.6607 -0.0232 13 6 9.9220 -2.6097 -0.0312 14 8 10.5287 -1.5588 -0.0328 15 7 10.5959 -3.7769 -0.0356 16 6 12.0609 -3.7769 -0.0418 17 6 12.5709 -5.2194 -0.0465 18 6 14.1009 -5.2194 -0.0523 19 6 14.6032 -6.6402 -0.0576 20 1 13.9013 -7.4611 -0.0566 21 6 15.9587 -6.8922 -0.0628 22 7 16.8134 -5.8926 -0.0637 23 14 16.5814 -8.6534 -0.0687 24 1 16.7415 -9.1171 -1.4703 25 1 17.8919 -8.7173 0.6267 26 1 15.6057 -9.5257 0.6329 27 6 3.5805 -1.1972 0.0010 28 6 2.1982 -1.1972 0.0009 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1325 0.0001 34 1 5.9206 1.7511 -1.2566 35 1 7.3739 0.7232 -1.2643 36 1 5.9173 0.2114 -2.1495 37 1 5.9335 0.2034 2.1289 38 1 7.3835 0.7192 1.2342 39 1 5.9301 1.7465 1.2418 40 1 5.9287 -1.9577 0.8763 41 1 5.9220 -1.9550 -0.9036 42 1 8.2386 -0.6025 -0.0209 43 1 10.1109 -4.6170 -0.0347 44 1 12.4204 -3.2619 -0.9325 45 1 12.4280 -3.2644 0.8474 46 1 12.2113 -5.7349 0.8440 47 1 12.2038 -5.7316 -0.9359 48 1 14.4608 -4.7039 -0.9426 49 1 14.4676 -4.7074 0.8373 50 1 17.7670 -6.0699 -0.0677 51 1 4.1205 -2.1325 0.0013 52 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286447686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:05 Heat of formation + Delta-G solvation = -95.474669 kcal Electronic energy + Delta-G solvation = -28906.509738 eV Core-core repulsion = 24868.948776 eV Total energy + Delta-G solvation = -4037.560961 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.87531 -40.90698 -39.67176 -38.07175 -37.13626 -35.37452 -34.76127 -33.04222 -32.44551 -31.91609 -29.16890 -28.21203 -28.17844 -27.51396 -25.78836 -24.12587 -23.15822 -22.62898 -22.36707 -21.43294 -20.37214 -19.47792 -18.50375 -18.06516 -17.27616 -17.19883 -16.68492 -16.55541 -16.34260 -16.26510 -15.90676 -15.62322 -15.53142 -14.96889 -14.80437 -14.57788 -14.45969 -14.39704 -14.27650 -14.14664 -13.77726 -13.63293 -13.48574 -13.03913 -12.89939 -12.86550 -12.75793 -12.69026 -12.65143 -12.54586 -12.40206 -12.25278 -12.00954 -11.69859 -11.64129 -11.55574 -11.46086 -11.23462 -10.73371 -10.54398 -10.39625 -10.28193 -9.79406 -9.36488 -8.19153 -6.30057 0.29065 0.43255 0.52594 1.25960 1.42528 1.43184 1.54314 2.09003 2.41863 2.60239 2.84122 3.14943 3.38112 3.48599 3.62750 3.88909 4.04102 4.08331 4.09624 4.13016 4.18390 4.19228 4.52403 4.52819 4.54290 4.57998 4.61310 4.76126 4.81569 4.83665 4.86603 4.89719 4.91769 4.92059 4.94211 5.05454 5.08235 5.15137 5.21164 5.22703 5.25982 5.32494 5.33311 5.51862 5.57171 5.69290 5.71124 5.74564 5.84778 5.86583 6.14443 6.23136 6.30538 6.67540 6.86826 6.88952 7.39455 8.92736 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.031052 B = 0.001419 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.504243 B =19732.116411 C =20421.344647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.100 4.100 3 C -0.127 4.127 4 C -0.112 4.112 5 C -0.080 4.080 6 C -0.026 4.026 7 C -0.142 4.142 8 C -0.142 4.142 9 C 0.126 3.874 10 N -0.684 5.684 11 C 0.514 3.486 12 O -0.540 6.540 13 C 0.502 3.498 14 O -0.547 6.547 15 N -0.686 5.686 16 C 0.127 3.873 17 C -0.106 4.106 18 C 0.025 3.975 19 C -0.543 4.543 20 H 0.064 0.936 21 C 0.000 4.000 22 N -0.933 5.933 23 Si 0.964 3.036 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.263 1.263 27 C -0.132 4.132 28 C -0.130 4.130 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.418 0.582 43 H 0.419 0.581 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.067 0.933 48 H -0.003 1.003 49 H -0.003 1.003 50 H 0.263 0.737 51 H 0.126 0.874 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.352 17.004 0.143 38.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.130 4.130 5 C -0.080 4.080 6 C -0.026 4.026 7 C -0.199 4.199 8 C -0.200 4.200 9 C 0.003 3.997 10 N -0.339 5.339 11 C 0.294 3.706 12 O -0.417 6.417 13 C 0.282 3.718 14 O -0.425 6.425 15 N -0.338 5.338 16 C 0.004 3.996 17 C -0.144 4.144 18 C -0.013 4.013 19 C -0.581 4.581 20 H 0.082 0.918 21 C -0.198 4.198 22 N -0.573 5.573 23 Si 0.789 3.211 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.187 1.187 27 C -0.150 4.150 28 C -0.148 4.148 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.257 0.743 43 H 0.257 0.743 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.015 0.985 49 H 0.015 0.985 50 H 0.072 0.928 51 H 0.144 0.856 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -34.181 17.043 0.148 38.194 hybrid contribution 0.904 -0.906 -0.022 1.280 sum -33.277 16.138 0.126 36.984 Atomic orbital electron populations 1.20831 0.89942 1.03447 1.02873 1.20246 0.97255 0.93204 0.99316 1.21293 0.94292 0.98235 1.00696 1.21127 0.94281 0.97848 0.99702 1.19614 0.93779 0.93665 1.00947 1.19618 0.91510 0.93605 0.97874 1.21946 1.01251 1.01100 0.95651 1.21952 1.01209 1.01133 0.95668 1.21747 0.77448 0.97650 1.02841 1.45780 1.08068 1.08386 1.71623 1.19935 0.87781 0.84874 0.78025 1.90761 1.69909 1.31769 1.49272 1.20311 0.88750 0.84543 0.78184 1.90746 1.70364 1.31640 1.49751 1.45886 1.07975 1.08967 1.71021 1.21483 0.77376 0.98692 1.02038 1.21644 0.96945 0.93630 1.02208 1.18932 0.90993 0.95912 0.95451 1.21683 0.92238 0.93639 1.50564 0.91809 1.25956 0.97412 1.01632 0.94752 1.70093 1.02452 1.33120 1.51637 0.85459 0.77686 0.79533 0.78439 1.19865 1.20924 1.18676 1.21318 0.94730 0.98171 1.00765 1.21256 0.94201 0.98399 1.00948 0.90638 0.91140 0.90690 0.84456 0.84496 0.90459 0.91911 0.92544 0.92535 0.91912 0.90466 0.90691 0.90708 0.74275 0.74350 0.91674 0.91668 0.91489 0.91467 0.98506 0.98490 0.92795 0.85644 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 71.24 0.71 -0.16 16 2 C -0.10 -1.21 5.88 -19.86 -0.12 -1.32 16 3 C -0.13 -1.43 9.70 22.27 0.22 -1.21 16 4 C -0.11 -1.27 8.71 22.27 0.19 -1.08 16 5 C -0.08 -1.04 4.76 -19.87 -0.09 -1.13 16 6 C -0.03 -0.30 0.61 -52.93 -0.03 -0.34 16 7 C -0.14 -1.53 8.11 71.98 0.58 -0.95 16 8 C -0.14 -1.53 8.11 71.98 0.58 -0.95 16 9 C 0.13 1.97 3.22 86.38 0.28 2.25 16 10 N -0.68 -12.84 4.95 -464.41 -2.30 -15.14 16 11 C 0.51 12.86 7.89 87.27 0.69 13.55 16 12 O -0.54 -15.50 16.48 -3.26 -0.05 -15.55 16 13 C 0.50 14.48 7.89 87.27 0.69 15.16 16 14 O -0.55 -17.95 16.48 -3.22 -0.05 -18.00 16 15 N -0.69 -19.94 5.55 -464.41 -2.58 -22.52 16 16 C 0.13 4.32 5.67 86.38 0.49 4.81 16 17 C -0.11 -4.08 5.27 30.59 0.16 -3.92 16 18 C 0.02 1.27 4.97 29.85 0.15 1.42 16 19 C -0.54 -30.27 9.11 25.60 0.23 -30.04 16 20 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 21 C 0.00 0.02 5.46 84.65 0.46 0.48 16 22 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 23 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 27 C -0.13 -1.90 8.98 22.27 0.20 -1.70 16 28 C -0.13 -1.76 9.70 22.27 0.22 -1.54 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.47 8.09 -2.39 -0.02 0.45 16 31 H 0.07 0.43 8.09 -2.39 -0.02 0.41 16 32 H 0.14 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.14 1.07 7.10 -2.91 -0.02 1.04 16 34 H 0.08 0.64 7.39 -2.39 -0.02 0.62 16 35 H 0.06 0.69 6.86 -2.39 -0.02 0.67 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 0.69 6.86 -2.39 -0.02 0.67 16 39 H 0.08 0.64 7.39 -2.39 -0.02 0.62 16 40 H 0.07 1.25 7.50 -2.39 -0.02 1.23 16 41 H 0.07 1.25 7.52 -2.39 -0.02 1.23 16 42 H 0.42 7.02 5.63 -92.71 -0.52 6.50 16 43 H 0.42 10.96 7.94 -92.71 -0.74 10.22 16 44 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 48 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 49 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 50 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 51 H 0.13 1.75 5.90 -2.91 -0.02 1.74 16 52 H 0.13 1.41 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -68.56 423.39 2.61 -65.95 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.33 Total: 22.20 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 5.61 Total: -6.66 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -4.59 Total: -93.79 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.11 Total: -33.55 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -68.56 2.61 -65.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286447686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.522 kcal (2) G-P(sol) polarization free energy of solvation -68.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds