Wall clock time and date at job start Sat Apr 11 2020 07:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38264 * 120.00073 * 2 1 4 4 C 1.38211 * 120.00236 * 179.72309 * 3 2 1 5 5 C 1.38252 * 119.99742 * 0.27798 * 4 3 2 6 6 C 1.50701 * 119.99755 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46995 * 100.42831 * 6 5 4 8 8 H 1.09003 * 109.47166 * 54.78519 * 7 6 5 9 9 C 1.53000 * 109.47151 * 174.78623 * 7 6 5 10 10 N 1.46507 * 109.46871 * 294.78714 * 7 6 5 11 11 C 1.34774 * 119.99496 * 153.87869 * 10 7 6 12 12 O 1.21352 * 120.00548 * 0.02562 * 11 10 7 13 13 C 1.49455 * 119.99845 * 180.02562 * 11 10 7 14 14 O 1.21347 * 119.99985 * 359.97438 * 13 11 10 15 15 N 1.34773 * 120.00109 * 180.02562 * 13 11 10 16 16 C 1.46502 * 119.99937 * 180.02562 * 15 13 11 17 17 C 1.53000 * 109.47041 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47156 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47012 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00363 * 0.02562 * 19 18 17 21 21 C 1.37881 * 120.00014 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99628 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00076 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47022 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46958 * 120.00497 * 23 21 19 26 26 H 1.48506 * 109.46853 * 240.00290 * 23 21 19 27 27 C 1.38213 * 120.00345 * 359.97438 * 5 4 3 28 28 C 1.50699 * 119.99923 * 179.97438 * 27 5 4 29 29 C 1.38216 * 120.00628 * 180.19399 * 2 1 3 30 30 H 1.09000 * 109.47538 * 89.99711 * 1 2 3 31 31 H 1.08999 * 109.47121 * 210.00016 * 1 2 3 32 32 H 1.08998 * 109.47691 * 329.99775 * 1 2 3 33 33 H 1.08007 * 119.99716 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.99809 * 180.25507 * 4 3 2 35 35 H 1.08998 * 109.47613 * 220.42626 * 6 5 4 36 36 H 1.09000 * 109.47350 * 340.42827 * 6 5 4 37 37 H 1.09002 * 109.46840 * 179.97438 * 9 7 6 38 38 H 1.08995 * 109.47634 * 300.00205 * 9 7 6 39 39 H 1.09004 * 109.46688 * 60.00112 * 9 7 6 40 40 H 0.96993 * 120.00421 * 333.87973 * 10 7 6 41 41 H 0.97004 * 120.00194 * 359.97438 * 15 13 11 42 42 H 1.09000 * 109.46787 * 299.99377 * 16 15 13 43 43 H 1.08999 * 109.47167 * 59.99481 * 16 15 13 44 44 H 1.09000 * 109.47244 * 299.99615 * 17 16 15 45 45 H 1.09007 * 109.46949 * 59.99756 * 17 16 15 46 46 H 1.09000 * 109.47112 * 300.00164 * 18 17 16 47 47 H 1.08999 * 109.46727 * 60.00197 * 18 17 16 48 48 H 0.97007 * 119.99787 * 179.97438 * 22 21 19 49 49 H 1.08993 * 109.47291 * 84.32325 * 28 27 5 50 50 H 1.09000 * 109.46761 * 204.31995 * 28 27 5 51 51 H 1.08998 * 109.47481 * 324.31740 * 28 27 5 52 52 H 1.08001 * 119.99246 * 0.03450 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0058 5 6 4.2716 0.0001 0.0058 6 6 5.7786 0.0002 0.0115 7 6 6.2832 -0.2640 1.4315 8 1 5.8442 -1.1884 1.8070 9 6 7.8077 -0.3932 1.4153 10 7 5.8966 0.8491 2.3021 11 6 5.7429 0.6472 3.6258 12 8 5.9251 -0.4563 4.0966 13 6 5.3480 1.7826 4.5139 14 8 5.1662 2.8862 4.0433 15 7 5.1947 1.5809 5.8376 16 6 4.8071 2.6937 6.7080 17 6 4.7025 2.1991 8.1521 18 6 4.2982 3.3614 9.0613 19 6 4.1946 2.8741 10.4835 20 1 4.3972 1.8390 10.7158 21 6 3.8421 3.7499 11.4884 22 7 3.5959 5.0105 11.2056 23 14 3.7144 3.1460 13.2515 24 1 4.0391 1.6979 13.3034 25 1 4.6707 3.8982 14.1028 26 1 2.3322 3.3621 13.7497 27 6 3.5806 -1.1969 0.0005 28 6 4.3342 -2.5019 -0.0001 29 6 2.1981 -1.1969 -0.0041 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6582 2.1327 -0.0004 34 1 4.1203 2.1328 0.0099 35 1 6.1446 -0.7806 -0.6552 36 1 6.1432 0.9692 -0.3292 37 1 8.1671 -0.5810 2.4271 38 1 8.0953 -1.2213 0.7676 39 1 8.2466 0.5312 1.0398 40 1 5.7513 1.7312 1.9260 41 1 5.3404 0.6988 6.2139 42 1 5.5580 3.4814 6.6469 43 1 3.8419 3.0862 6.3879 44 1 3.9513 1.4116 8.2130 45 1 5.6676 1.8063 8.4724 46 1 5.0496 4.1487 9.0004 47 1 3.3333 3.7545 8.7411 48 1 3.3475 5.6266 11.9125 49 1 4.6004 -2.7682 1.0227 50 1 3.7063 -3.2837 -0.4274 51 1 5.2408 -2.3977 -0.5962 52 1 1.6581 -2.1322 -0.0078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286764061.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:11 Heat of formation + Delta-G solvation = -103.500189 kcal Electronic energy + Delta-G solvation = -29688.911754 eV Core-core repulsion = 25651.002780 eV Total energy + Delta-G solvation = -4037.908974 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.82228 -40.72921 -39.69095 -37.52703 -37.03248 -35.28724 -34.67245 -33.10389 -33.02444 -32.21548 -29.34736 -28.96816 -28.01750 -26.43489 -25.71004 -24.40113 -23.03292 -22.38961 -22.20305 -21.35128 -20.92501 -19.49430 -18.51650 -18.05587 -17.21609 -17.07594 -16.89837 -16.55840 -16.34736 -16.22749 -15.98839 -15.69587 -15.19166 -14.94177 -14.88225 -14.53328 -14.29256 -14.22844 -14.01629 -13.81432 -13.78494 -13.55752 -13.52750 -13.29871 -13.00535 -12.90599 -12.79107 -12.76322 -12.71176 -12.56313 -12.45300 -12.38139 -11.89068 -11.76315 -11.71935 -11.65051 -11.56715 -11.22790 -10.69052 -10.56268 -10.35973 -10.27132 -9.63761 -9.28840 -8.20348 -6.31171 0.31813 0.41794 0.49845 1.30631 1.41192 1.41712 1.54813 2.11735 2.41036 2.63164 2.78633 3.13601 3.40703 3.72454 3.84267 3.92149 4.04444 4.06741 4.07756 4.16233 4.21891 4.36893 4.38753 4.47932 4.50754 4.61626 4.72199 4.73609 4.76942 4.80078 4.85486 4.86090 4.89821 4.95318 4.95818 4.99907 5.09353 5.13304 5.21393 5.25950 5.28763 5.35638 5.39715 5.50688 5.56917 5.69389 5.71275 5.76105 5.83488 5.90817 6.16696 6.22198 6.33329 6.71261 6.85805 6.91947 7.38194 8.91819 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.001945 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.294039 B =14390.003600 C =15459.368346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.100 4.100 3 C -0.143 4.143 4 C -0.117 4.117 5 C -0.100 4.100 6 C -0.081 4.081 7 C 0.142 3.858 8 H 0.082 0.918 9 C -0.161 4.161 10 N -0.680 5.680 11 C 0.515 3.485 12 O -0.541 6.541 13 C 0.499 3.501 14 O -0.547 6.547 15 N -0.688 5.688 16 C 0.128 3.872 17 C -0.105 4.105 18 C 0.025 3.975 19 C -0.541 4.541 20 H 0.064 0.936 21 C -0.002 4.002 22 N -0.933 5.933 23 Si 0.966 3.034 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.279 1.279 27 C -0.088 4.088 28 C -0.117 4.117 29 C -0.136 4.136 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.043 0.957 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.415 0.585 41 H 0.418 0.582 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.067 0.933 46 H -0.003 1.003 47 H -0.004 1.004 48 H 0.263 0.737 49 H 0.067 0.933 50 H 0.072 0.928 51 H 0.087 0.913 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.994 -14.811 -30.639 34.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.100 4.100 3 C -0.161 4.161 4 C -0.135 4.135 5 C -0.100 4.100 6 C -0.118 4.118 7 C 0.039 3.961 8 H 0.100 0.900 9 C -0.219 4.219 10 N -0.333 5.333 11 C 0.295 3.705 12 O -0.418 6.418 13 C 0.279 3.721 14 O -0.426 6.426 15 N -0.340 5.340 16 C 0.005 3.995 17 C -0.143 4.143 18 C -0.013 4.013 19 C -0.579 4.579 20 H 0.082 0.918 21 C -0.200 4.200 22 N -0.574 5.574 23 Si 0.790 3.210 24 H -0.185 1.185 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.088 4.088 28 C -0.173 4.173 29 C -0.154 4.154 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.113 0.887 37 H 0.062 0.938 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.252 0.748 41 H 0.256 0.744 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.015 0.985 47 H 0.014 0.986 48 H 0.072 0.928 49 H 0.085 0.915 50 H 0.091 0.909 51 H 0.105 0.895 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.952 -14.672 -30.577 34.043 hybrid contribution -0.484 0.456 1.261 1.425 sum 2.468 -14.216 -29.316 32.675 Atomic orbital electron populations 1.20817 0.90222 1.03098 1.02932 1.20212 0.97134 0.93339 0.99323 1.21245 0.94843 0.98012 1.01984 1.21261 0.94329 0.98171 0.99692 1.19831 0.96158 0.92538 1.01496 1.20964 0.90248 1.05683 0.94947 1.21262 0.96040 0.89349 0.89423 0.89954 1.22183 0.93340 1.03952 1.02444 1.45869 1.66844 1.14986 1.05579 1.19904 0.78511 0.87845 0.84275 1.90743 1.50688 1.25152 1.75264 1.20446 0.78877 0.88910 0.83838 1.90737 1.50802 1.25781 1.75232 1.45888 1.66765 1.14871 1.06455 1.21467 1.00189 0.88374 0.89505 1.21639 1.01860 0.99344 0.91495 1.18935 0.95103 0.93508 0.93733 1.21696 1.46327 0.96212 0.93640 0.91807 1.25992 0.94952 0.95012 1.04051 1.70108 1.48127 1.04708 1.34411 0.85385 0.77738 0.78884 0.78952 1.18461 1.20486 1.20504 1.20053 0.93826 0.95905 0.98993 1.20910 1.00704 0.93128 1.02578 1.21156 0.94041 0.97960 1.02238 0.90179 0.91144 0.91529 0.85695 0.85071 0.86534 0.88700 0.93824 0.88801 0.91042 0.74751 0.74441 0.91691 0.91930 0.91576 0.91429 0.98486 0.98583 0.92776 0.91478 0.90862 0.89451 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.01 71.23 0.71 -0.88 16 2 C -0.10 -1.82 5.88 -19.87 -0.12 -1.93 16 3 C -0.14 -2.66 9.70 22.27 0.22 -2.44 16 4 C -0.12 -1.99 9.67 22.27 0.22 -1.77 16 5 C -0.10 -1.52 4.87 -19.87 -0.10 -1.62 16 6 C -0.08 -0.79 4.36 29.85 0.13 -0.66 16 7 C 0.14 2.01 2.51 44.99 0.11 2.12 16 8 H 0.08 1.44 6.23 -2.39 -0.01 1.43 16 9 C -0.16 -1.86 9.50 71.98 0.68 -1.18 16 10 N -0.68 -13.04 4.78 -443.84 -2.12 -15.16 16 11 C 0.51 13.39 7.87 87.27 0.69 14.08 16 12 O -0.54 -15.90 16.12 -3.25 -0.05 -15.95 16 13 C 0.50 15.06 7.89 87.27 0.69 15.75 16 14 O -0.55 -18.69 16.48 -3.24 -0.05 -18.74 16 15 N -0.69 -20.83 5.55 -464.41 -2.58 -23.41 16 16 C 0.13 4.47 5.67 86.38 0.49 4.96 16 17 C -0.11 -4.13 5.27 30.59 0.16 -3.97 16 18 C 0.02 1.29 4.97 29.85 0.15 1.44 16 19 C -0.54 -30.34 9.11 25.60 0.23 -30.11 16 20 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 21 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 22 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 23 Si 0.97 44.11 29.54 68.60 2.03 46.13 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 27 C -0.09 -1.40 5.86 -19.87 -0.12 -1.52 16 28 C -0.12 -1.28 8.93 71.24 0.64 -0.65 16 29 C -0.14 -2.36 9.33 22.27 0.21 -2.15 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 32 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 33 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.13 1.83 8.03 -2.91 -0.02 1.81 16 35 H 0.12 0.64 6.49 -2.39 -0.02 0.63 16 36 H 0.09 0.68 8.00 -2.39 -0.02 0.66 16 37 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.42 7.27 8.08 -92.71 -0.75 6.52 16 41 H 0.42 11.47 7.94 -92.71 -0.74 10.73 16 42 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 46 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 47 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 48 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 49 H 0.07 0.84 7.44 -2.39 -0.02 0.82 16 50 H 0.07 0.68 8.05 -2.39 -0.02 0.66 16 51 H 0.09 0.62 6.37 -2.39 -0.02 0.60 16 52 H 0.13 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -71.20 430.33 2.40 -68.80 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.56 Total: 25.01 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 5.45 Total: -10.19 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -4.41 Total: -95.05 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.11 Total: -34.70 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -71.20 2.40 -68.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286764061.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.700 kcal (2) G-P(sol) polarization free energy of solvation -71.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds