Wall clock time and date at job start Sat Apr 11 2020 07:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38264 * 119.99808 * 2 1 4 4 C 1.38216 * 119.99761 * 180.27429 * 3 2 1 5 5 C 1.38261 * 119.99716 * 359.75132 * 4 3 2 6 6 C 1.38207 * 120.00384 * 359.97438 * 5 4 3 7 7 C 1.38214 * 120.00409 * 179.75180 * 2 1 3 8 8 C 1.50704 * 119.99679 * 359.97438 * 7 2 1 9 9 C 1.53001 * 109.47083 * 84.73082 * 8 7 2 10 10 H 1.08999 * 109.46935 * 304.99932 * 9 8 7 11 11 C 1.52999 * 109.46944 * 185.00194 * 9 8 7 12 12 N 1.46499 * 109.47193 * 64.99991 * 9 8 7 13 13 C 1.34777 * 119.99665 * 205.27836 * 12 9 8 14 14 O 1.21343 * 120.00424 * 359.72011 * 13 12 9 15 15 C 1.49452 * 119.99622 * 179.72283 * 13 12 9 16 16 O 1.21343 * 119.99955 * 0.02562 * 15 13 12 17 17 N 1.34777 * 119.99621 * 179.97438 * 15 13 12 18 18 C 1.46505 * 119.99724 * 180.02562 * 17 15 13 19 19 C 1.52999 * 109.47192 * 180.02562 * 18 17 15 20 20 C 1.53007 * 109.46946 * 300.00266 * 19 18 17 21 21 C 1.53003 * 109.46917 * 60.00063 * 19 18 17 22 22 C 1.50693 * 109.47328 * 179.97438 * 19 18 17 23 23 H 1.08001 * 120.00171 * 0.02562 * 22 19 18 24 24 C 1.37875 * 120.00443 * 179.97438 * 22 19 18 25 25 N 1.31514 * 119.99480 * 0.02562 * 24 22 19 26 26 Si 1.86796 * 120.00574 * 180.02562 * 24 22 19 27 27 H 1.48504 * 109.47042 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47152 * 119.99887 * 26 24 22 29 29 H 1.48493 * 109.47284 * 240.00258 * 26 24 22 30 30 H 1.09000 * 109.47056 * 270.24989 * 1 2 3 31 31 H 1.09002 * 109.47235 * 30.25136 * 1 2 3 32 32 H 1.09004 * 109.47138 * 150.25118 * 1 2 3 33 33 H 1.07995 * 120.00102 * 0.04233 * 3 2 1 34 34 H 1.07999 * 119.99964 * 179.76990 * 4 3 2 35 35 H 1.08003 * 119.99483 * 179.97438 * 5 4 3 36 36 H 1.08001 * 120.00020 * 180.02562 * 6 5 4 37 37 H 1.08996 * 109.47035 * 324.72839 * 8 7 2 38 38 H 1.08994 * 109.46967 * 204.72877 * 8 7 2 39 39 H 1.08999 * 109.47091 * 299.99643 * 11 9 8 40 40 H 1.08996 * 109.47098 * 60.00014 * 11 9 8 41 41 H 1.09001 * 109.46823 * 179.97438 * 11 9 8 42 42 H 0.97001 * 119.99790 * 24.99549 * 12 9 8 43 43 H 0.97000 * 120.00483 * 0.02562 * 17 15 13 44 44 H 1.08995 * 109.46852 * 300.00269 * 18 17 15 45 45 H 1.09001 * 109.47048 * 60.00288 * 18 17 15 46 46 H 1.08990 * 109.46922 * 59.99956 * 20 19 18 47 47 H 1.08994 * 109.46561 * 179.97438 * 20 19 18 48 48 H 1.08998 * 109.46368 * 299.99842 * 20 19 18 49 49 H 1.08995 * 109.47357 * 59.99793 * 21 19 18 50 50 H 1.09001 * 109.46873 * 180.02562 * 21 19 18 51 51 H 1.09003 * 109.47092 * 299.99902 * 21 19 18 52 52 H 0.97009 * 119.99998 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0057 5 6 4.2716 0.0000 -0.0063 6 6 3.5806 -1.1969 -0.0005 7 6 2.1981 -1.1969 0.0052 8 6 1.4446 -2.5020 0.0114 9 6 1.0743 -2.8840 -1.4231 10 1 0.5226 -2.0658 -1.8861 11 6 0.2034 -4.1418 -1.4073 12 7 2.2952 -3.1450 -2.1896 13 6 2.2941 -2.9981 -3.5293 14 8 1.2806 -2.6545 -4.1012 15 6 3.5413 -3.2583 -4.3106 16 8 4.5547 -3.6024 -3.7388 17 7 3.5400 -3.1119 -5.6504 18 6 4.7625 -3.3675 -6.4163 19 6 4.4918 -3.1296 -7.9033 20 6 3.3856 -4.0741 -8.3778 21 6 4.0507 -1.6800 -8.1157 22 6 5.7494 -3.3920 -8.6910 23 1 6.6514 -3.6983 -8.1822 24 6 5.7482 -3.2420 -10.0616 25 7 4.6497 -2.8695 -10.6814 26 14 7.3068 -3.5680 -11.0383 27 1 8.3956 -3.9718 -10.1126 28 1 7.0595 -4.6579 -12.0161 29 1 7.7044 -2.3340 -11.7624 30 1 -0.3633 0.0045 1.0277 31 1 -0.3634 0.8877 -0.5177 32 1 -0.3633 -0.8923 -0.5099 33 1 1.6583 2.1327 0.0007 34 1 4.1204 2.1327 -0.0095 35 1 5.3517 0.0000 -0.0112 36 1 4.1207 -2.1322 -0.0005 37 1 0.5366 -2.3945 0.6047 38 1 2.0715 -3.2814 0.4446 39 1 0.7551 -4.9600 -0.9444 40 1 -0.7050 -3.9475 -0.8370 41 1 -0.0608 -4.4136 -2.4293 42 1 3.1055 -3.4196 -1.7324 43 1 2.7298 -2.8372 -6.1075 44 1 5.5503 -2.6944 -6.0785 45 1 5.0770 -4.4001 -6.2646 46 1 2.4762 -3.8838 -7.8080 47 1 3.1925 -3.9042 -9.4370 48 1 3.7000 -5.1067 -8.2264 49 1 4.8386 -1.0071 -7.7776 50 1 3.8574 -1.5106 -9.1750 51 1 3.1411 -1.4898 -7.5458 52 1 4.6489 -2.7637 -11.6457 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422114346.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:17 Heat of formation + Delta-G solvation = -83.807240 kcal Electronic energy + Delta-G solvation = -30774.758925 eV Core-core repulsion = 26737.703901 eV Total energy + Delta-G solvation = -4037.055024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80127 -40.62471 -39.69793 -38.19645 -37.26793 -35.10917 -34.03140 -32.94858 -32.73883 -31.56596 -28.22139 -27.95983 -27.60431 -27.23388 -27.01432 -25.15863 -23.05012 -22.48035 -21.46073 -21.37886 -20.71754 -19.59395 -18.11118 -17.77240 -17.31594 -17.08312 -16.85647 -16.65481 -16.18638 -16.05949 -15.91200 -15.47062 -15.04975 -14.80466 -14.70850 -14.66812 -14.35648 -14.06596 -13.98820 -13.85887 -13.41223 -13.23824 -13.22710 -13.14919 -12.99270 -12.87830 -12.83685 -12.72003 -12.63223 -12.56104 -12.29409 -12.12659 -11.99565 -11.78038 -11.66685 -11.52328 -11.31018 -10.76712 -10.61469 -10.42363 -10.31522 -10.12336 -9.68454 -9.43284 -8.02390 -6.18936 0.37215 0.44682 0.50290 1.38429 1.42670 1.47193 1.56361 2.17196 2.45003 2.73145 2.83369 3.21549 3.47127 3.73475 3.87756 3.95690 4.09061 4.16076 4.27590 4.33547 4.36901 4.45728 4.49324 4.51161 4.66252 4.72233 4.74759 4.84803 4.85413 4.90901 4.91118 4.99137 5.01700 5.02267 5.04910 5.15547 5.21005 5.21149 5.28683 5.34679 5.37614 5.46789 5.60765 5.63296 5.64781 5.66776 5.75012 5.97653 6.09583 6.16193 6.17727 6.39530 6.41434 6.76298 6.86106 6.98151 7.49184 8.97159 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.002341 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.372756 B =11957.181129 C =12626.369845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.093 4.093 3 C -0.135 4.135 4 C -0.132 4.132 5 C -0.141 4.141 6 C -0.122 4.122 7 C -0.095 4.095 8 C -0.081 4.081 9 C 0.142 3.858 10 H 0.080 0.920 11 C -0.161 4.161 12 N -0.680 5.680 13 C 0.514 3.486 14 O -0.542 6.542 15 C 0.495 3.505 16 O -0.550 6.550 17 N -0.682 5.682 18 C 0.144 3.856 19 C 0.051 3.949 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.525 4.525 23 H 0.051 0.949 24 C 0.026 3.974 25 N -0.901 5.901 26 Si 0.949 3.051 27 H -0.272 1.272 28 H -0.282 1.282 29 H -0.283 1.283 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.041 0.959 42 H 0.415 0.585 43 H 0.412 0.588 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.029 0.971 47 H 0.064 0.936 48 H 0.024 0.976 49 H 0.022 0.978 50 H 0.064 0.936 51 H 0.028 0.972 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.860 3.385 25.317 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.140 4.140 7 C -0.095 4.095 8 C -0.119 4.119 9 C 0.039 3.961 10 H 0.098 0.902 11 C -0.219 4.219 12 N -0.333 5.333 13 C 0.294 3.706 14 O -0.420 6.420 15 C 0.276 3.724 16 O -0.429 6.429 17 N -0.334 5.334 18 C 0.021 3.979 19 C 0.051 3.949 20 C -0.182 4.182 21 C -0.181 4.181 22 C -0.564 4.564 23 H 0.069 0.931 24 C -0.174 4.174 25 N -0.540 5.540 26 Si 0.775 3.225 27 H -0.196 1.196 28 H -0.208 1.208 29 H -0.209 1.209 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.135 0.865 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.060 0.940 42 H 0.253 0.747 43 H 0.250 0.750 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.048 0.952 47 H 0.083 0.917 48 H 0.043 0.957 49 H 0.041 0.959 50 H 0.083 0.917 51 H 0.047 0.953 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.942 3.420 25.132 27.242 hybrid contribution 1.242 0.050 -1.081 1.647 sum -8.700 3.471 24.051 25.811 Atomic orbital electron populations 1.20925 0.89780 1.03451 1.03357 1.20111 0.97277 0.92646 0.99269 1.21307 0.94477 0.98338 1.01118 1.21398 0.94820 0.98651 1.00157 1.21381 1.00648 0.93006 1.00880 1.21278 0.94096 0.98607 1.00041 1.19876 0.93630 0.95181 1.00840 1.20967 1.02316 0.93989 0.94584 1.21266 0.84559 0.98899 0.91353 0.90213 1.22182 1.00544 0.96891 1.02295 1.45851 1.15936 1.66479 1.05017 1.19971 0.87803 0.78543 0.84282 1.90737 1.34182 1.46683 1.70386 1.20440 0.89056 0.79235 0.83710 1.90698 1.34603 1.47483 1.70164 1.46074 1.15903 1.65448 1.05997 1.21537 0.84562 0.99614 0.92203 1.18370 0.94897 0.93202 0.88471 1.21706 0.96370 0.97549 1.02550 1.21703 0.97108 0.97044 1.02257 1.21268 0.96405 1.46440 0.92289 0.93067 1.25501 0.98575 0.94776 0.98501 1.69936 1.27596 1.47453 1.09011 0.85648 0.80556 0.77576 0.78670 1.19637 1.20837 1.20885 0.89459 0.91392 0.90729 0.84890 0.85031 0.85474 0.85276 0.86544 0.88544 0.90928 0.88720 0.93953 0.74731 0.75008 0.92928 0.92715 0.95231 0.91742 0.95691 0.95860 0.91733 0.95324 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.22 71.23 0.66 -0.77 16 2 C -0.09 -1.59 5.88 -19.86 -0.12 -1.71 16 3 C -0.13 -2.42 9.70 22.27 0.22 -2.21 16 4 C -0.13 -2.50 10.05 22.27 0.22 -2.27 16 5 C -0.14 -2.78 10.05 22.27 0.22 -2.56 16 6 C -0.12 -2.28 9.36 22.27 0.21 -2.07 16 7 C -0.10 -1.60 4.89 -19.87 -0.10 -1.70 16 8 C -0.08 -0.94 4.19 29.85 0.13 -0.81 16 9 C 0.14 2.36 2.31 44.99 0.10 2.46 16 10 H 0.08 1.61 6.43 -2.39 -0.02 1.60 16 11 C -0.16 -2.23 9.49 71.98 0.68 -1.55 16 12 N -0.68 -15.01 4.66 -443.87 -2.07 -17.08 16 13 C 0.51 15.49 7.86 87.27 0.69 16.17 16 14 O -0.54 -18.43 16.14 -3.23 -0.05 -18.48 16 15 C 0.49 17.36 7.89 87.27 0.69 18.05 16 16 O -0.55 -20.86 16.48 -3.22 -0.05 -20.91 16 17 N -0.68 -25.50 4.95 -464.41 -2.30 -27.80 16 18 C 0.14 6.08 4.50 86.38 0.39 6.47 16 19 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 20 C -0.12 -5.71 8.08 71.98 0.58 -5.13 16 21 C -0.12 -5.71 8.08 71.98 0.58 -5.13 16 22 C -0.53 -27.59 8.01 25.60 0.21 -27.38 16 23 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 24 C 0.03 1.38 5.15 84.65 0.44 1.81 16 25 N -0.90 -48.62 9.35 21.45 0.20 -48.42 16 26 Si 0.95 42.48 29.54 68.60 2.03 44.50 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 29 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 32 H 0.07 0.83 5.47 -2.38 -0.01 0.82 16 33 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.13 2.06 8.00 -2.91 -0.02 2.04 16 37 H 0.12 0.84 7.01 -2.39 -0.02 0.82 16 38 H 0.10 0.85 8.05 -2.39 -0.02 0.83 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 41 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.42 8.33 7.83 -92.71 -0.73 7.60 16 43 H 0.41 15.13 5.63 -92.71 -0.52 14.61 16 44 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.03 1.19 6.86 -2.39 -0.02 1.18 16 47 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 48 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 51 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 52 H 0.26 13.48 8.31 -92.70 -0.77 12.71 16 Total: -1.00 -62.89 415.37 3.20 -59.69 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: -0.32 Total: 34.45 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.77 Total: -5.95 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -4.17 Total: -93.29 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.11 Total: -39.39 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -62.89 3.20 -59.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422114346.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.122 kcal (2) G-P(sol) polarization free energy of solvation -62.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds