Wall clock time and date at job start Sat Apr 11 2020 07:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38230 * 120.00068 * 2 1 4 4 C 1.38236 * 119.99883 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.99991 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00089 * 359.97438 * 4 3 2 7 7 C 1.38237 * 119.99843 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99763 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47238 * 89.99937 * 8 7 6 10 10 N 1.46496 * 109.47294 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00447 * 179.97438 * 10 9 8 12 12 O 1.21350 * 119.99353 * 0.02562 * 11 10 9 13 13 C 1.49446 * 120.00046 * 179.97438 * 11 10 9 14 14 O 1.21345 * 120.00194 * 0.02562 * 13 11 10 15 15 N 1.34774 * 119.99676 * 179.97438 * 13 11 10 16 16 C 1.46506 * 119.99731 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.46949 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.47143 * 299.99805 * 17 16 15 19 19 C 1.53000 * 109.47701 * 59.99624 * 17 16 15 20 20 C 1.50696 * 109.47242 * 179.97438 * 17 16 15 21 21 H 1.08000 * 120.00103 * 359.97438 * 20 17 16 22 22 C 1.37882 * 120.00363 * 180.02562 * 20 17 16 23 23 N 1.31520 * 119.99700 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 120.00226 * 179.97438 * 22 20 17 25 25 H 1.48505 * 109.46819 * 60.00111 * 24 22 20 26 26 H 1.48494 * 109.47196 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47285 * 300.00175 * 24 22 20 28 28 C 1.38236 * 120.00188 * 0.24641 * 7 6 4 29 29 H 1.08991 * 109.47181 * 89.99887 * 1 2 3 30 30 H 1.09000 * 109.47228 * 210.00058 * 1 2 3 31 31 H 1.09002 * 109.46642 * 329.99546 * 1 2 3 32 32 H 1.07992 * 119.99956 * 0.02562 * 3 2 1 33 33 H 1.09006 * 109.46774 * 270.01537 * 5 4 3 34 34 H 1.08991 * 109.47483 * 30.01558 * 5 4 3 35 35 H 1.09000 * 109.47116 * 150.02175 * 5 4 3 36 36 H 1.07998 * 120.00589 * 179.97438 * 6 4 3 37 37 H 1.09001 * 109.46953 * 209.99549 * 8 7 6 38 38 H 1.09000 * 109.47318 * 329.99147 * 8 7 6 39 39 H 1.09001 * 109.46832 * 299.99686 * 9 8 7 40 40 H 1.09004 * 109.47261 * 59.99705 * 9 8 7 41 41 H 0.97006 * 119.99755 * 359.97438 * 10 9 8 42 42 H 0.96994 * 120.00416 * 359.97438 * 15 13 11 43 43 H 1.09001 * 109.47068 * 299.99552 * 16 15 13 44 44 H 1.08996 * 109.47564 * 60.00090 * 16 15 13 45 45 H 1.09002 * 109.47593 * 59.99977 * 18 17 16 46 46 H 1.09000 * 109.47312 * 180.02562 * 18 17 16 47 47 H 1.09004 * 109.46930 * 300.00065 * 18 17 16 48 48 H 1.09001 * 109.46503 * 59.99819 * 19 17 16 49 49 H 1.08996 * 109.47966 * 179.97438 * 19 17 16 50 50 H 1.09002 * 109.46994 * 300.00314 * 19 17 16 51 51 H 0.96999 * 120.00022 * 180.02562 * 23 22 20 52 52 H 1.07997 * 120.00153 * 179.72710 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5021 -0.0011 6 6 4.2717 -0.0001 -0.0005 7 6 3.5805 -1.1973 -0.0005 8 6 4.3340 -2.5024 -0.0011 9 6 4.5896 -2.9444 1.4411 10 7 5.3215 -4.2134 1.4406 11 6 5.6593 -4.7971 2.6075 12 8 5.3567 -4.2717 3.6586 13 6 6.4055 -6.0920 2.6068 14 8 6.7077 -6.6176 1.5557 15 7 6.7437 -6.6754 3.7738 16 6 7.4757 -7.9445 3.7731 17 6 7.7319 -8.3861 5.2154 18 6 8.5599 -7.3202 5.9358 19 6 6.3956 -8.5684 5.9380 20 6 8.4842 -9.6919 5.2148 21 1 8.7525 -10.1601 4.2793 22 6 8.8293 -10.2893 6.4086 23 7 8.5021 -9.7194 7.5478 24 14 9.7613 -11.9082 6.4078 25 1 11.0585 -11.7322 5.7067 26 1 10.0100 -12.3369 7.8076 27 1 8.9569 -12.9422 5.7085 28 6 2.1981 -1.1972 -0.0057 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1323 0.0004 33 1 4.5151 2.8166 -1.0290 34 1 3.7455 3.2618 0.5130 35 1 5.2869 2.3718 0.5120 36 1 5.3517 -0.0002 -0.0014 37 1 3.7447 -3.2619 -0.5148 38 1 5.2862 -2.3720 -0.5154 39 1 5.1789 -2.1849 1.9549 40 1 3.6374 -3.0748 1.9554 41 1 5.5631 -4.6336 0.6003 42 1 6.5032 -6.2547 4.6140 43 1 6.8856 -8.7040 3.2603 44 1 8.4275 -7.8147 3.2580 45 1 8.0154 -6.3759 5.9363 46 1 8.7428 -7.6350 6.9632 47 1 9.5119 -7.1903 5.4210 48 1 5.8058 -9.3278 5.4248 49 1 6.5781 -8.8835 6.9654 50 1 5.8511 -7.6242 5.9385 51 1 8.7451 -10.1395 8.3877 52 1 1.6581 -2.1325 -0.0101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422353203.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:29 Heat of formation + Delta-G solvation = -74.169321 kcal Electronic energy + Delta-G solvation = -29091.491457 eV Core-core repulsion = 25054.854365 eV Total energy + Delta-G solvation = -4036.637092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.44989 -39.97387 -38.38167 -36.49451 -35.95394 -33.87994 -33.67671 -33.10852 -30.88583 -29.57492 -27.63062 -27.05709 -26.36292 -25.71867 -25.32287 -24.36496 -22.49835 -21.10087 -21.00662 -20.02663 -18.97923 -18.18684 -16.77913 -16.56850 -16.38670 -15.93956 -15.75214 -15.43163 -14.90391 -14.67875 -14.60080 -14.56283 -14.32212 -13.66073 -13.59693 -13.52495 -13.28241 -13.27454 -12.93183 -12.91821 -12.71562 -12.67303 -12.39209 -12.21863 -11.72627 -11.63839 -11.50599 -11.39362 -11.30393 -11.27473 -11.16632 -10.86069 -10.73956 -10.39455 -10.19974 -9.64847 -9.55108 -9.33777 -9.23885 -8.94965 -8.88919 -8.80726 -8.60038 -8.36571 -6.02180 -4.13080 0.97829 1.02345 1.66216 2.57468 3.29911 3.34207 3.34630 3.37695 3.48100 3.91136 4.35601 4.37579 4.40067 4.44451 4.66290 4.74705 4.78842 4.83819 4.93506 4.97383 5.16435 5.17343 5.21295 5.24145 5.24254 5.27494 5.39841 5.49786 5.55504 5.65105 5.80176 5.85260 6.11396 6.12315 6.20574 6.20738 6.23621 6.29446 6.47233 6.63185 6.68033 6.82666 6.85566 6.94356 7.00653 7.10002 7.33567 7.55384 7.67074 7.71963 7.97329 8.00368 8.12927 8.32637 8.41440 8.86807 9.52659 10.99163 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.001545 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.442031 B =18115.380126 C =18196.568963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.081 4.081 3 C -0.124 4.124 4 C -0.081 4.081 5 C -0.115 4.115 6 C -0.119 4.119 7 C -0.072 4.072 8 C -0.093 4.093 9 C 0.124 3.876 10 N -0.707 5.707 11 C 0.507 3.493 12 O -0.520 6.520 13 C 0.496 3.504 14 O -0.536 6.536 15 N -0.680 5.680 16 C 0.128 3.872 17 C 0.055 3.945 18 C -0.133 4.133 19 C -0.133 4.133 20 C -0.508 4.508 21 H 0.058 0.942 22 C 0.067 3.933 23 N -0.884 5.884 24 Si 0.895 3.105 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 C -0.120 4.120 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.413 0.587 42 H 0.411 0.589 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.008 0.992 46 H 0.087 0.913 47 H 0.027 0.973 48 H 0.027 0.973 49 H 0.087 0.913 50 H 0.008 0.992 51 H 0.261 0.739 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.729 22.051 -15.620 29.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.081 4.081 3 C -0.142 4.142 4 C -0.081 4.081 5 C -0.172 4.172 6 C -0.138 4.138 7 C -0.073 4.073 8 C -0.130 4.130 9 C 0.001 3.999 10 N -0.362 5.362 11 C 0.288 3.712 12 O -0.395 6.395 13 C 0.275 3.725 14 O -0.415 6.415 15 N -0.332 5.332 16 C 0.006 3.994 17 C 0.054 3.946 18 C -0.191 4.191 19 C -0.191 4.191 20 C -0.546 4.546 21 H 0.076 0.924 22 C -0.135 4.135 23 N -0.522 5.522 24 Si 0.723 3.277 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 C -0.138 4.138 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.138 0.862 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.140 0.860 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.249 0.751 42 H 0.248 0.752 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.027 0.973 46 H 0.106 0.894 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.106 0.894 50 H 0.027 0.973 51 H 0.071 0.929 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.703 22.004 -15.360 29.689 hybrid contribution 0.492 -0.854 0.010 0.986 sum -12.211 21.149 -15.349 28.844 Atomic orbital electron populations 1.20803 0.91128 1.02931 1.02343 1.19896 0.96083 0.93035 0.99070 1.20917 0.93541 0.97560 1.02190 1.19895 0.93806 0.95312 0.99072 1.20802 1.00031 0.94027 1.02344 1.20940 0.99786 0.91406 1.01622 1.19589 0.93588 0.94233 0.99850 1.20794 1.01050 0.94818 0.96387 1.21400 0.97134 0.84892 0.96503 1.45749 1.57379 1.23896 1.09166 1.20486 0.80298 0.86198 0.84204 1.90761 1.53172 1.64475 1.31044 1.19953 0.81568 0.85596 0.85370 1.90719 1.54914 1.64750 1.31075 1.46228 1.54460 1.24504 1.07973 1.21944 0.94557 0.81516 1.01361 1.18389 0.93728 0.94938 0.87512 1.21854 0.97764 0.95098 1.04375 1.21853 0.96088 0.96771 1.04379 1.20904 1.35978 1.05051 0.92682 0.92410 1.24887 0.95645 0.97459 0.95510 1.69801 1.46408 1.38798 0.97238 0.86610 0.80359 0.83817 0.76919 1.20289 1.21326 1.20286 1.20941 0.93445 0.97745 1.01623 0.91154 0.91380 0.91534 0.86222 0.91154 0.91534 0.91380 0.85964 0.89897 0.89896 0.90825 0.90833 0.75126 0.75175 0.91991 0.91988 0.97269 0.89439 0.95355 0.95357 0.89434 0.97272 0.92884 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.08 -0.62 5.88 -104.62 -0.62 -1.23 16 3 C -0.12 -0.94 9.36 -39.59 -0.37 -1.31 16 4 C -0.08 -0.62 5.88 -104.62 -0.62 -1.23 16 5 C -0.12 -0.64 10.01 36.01 0.36 -0.28 16 6 C -0.12 -0.95 9.36 -39.58 -0.37 -1.32 16 7 C -0.07 -0.58 5.13 -104.62 -0.54 -1.12 16 8 C -0.09 -0.66 5.46 -27.88 -0.15 -0.81 16 9 C 0.12 1.19 5.66 -4.05 -0.02 1.17 16 10 N -0.71 -8.18 5.55 -60.73 -0.34 -8.52 16 11 C 0.51 7.82 7.89 -11.59 -0.09 7.72 16 12 O -0.52 -9.13 16.48 5.50 0.09 -9.04 16 13 C 0.50 8.72 7.89 -11.59 -0.09 8.63 16 14 O -0.54 -10.22 16.48 5.50 0.09 -10.13 16 15 N -0.68 -12.72 4.95 -60.73 -0.30 -13.02 16 16 C 0.13 2.69 4.50 -4.04 -0.02 2.67 16 17 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 18 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 19 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 20 C -0.51 -13.16 8.01 -34.44 -0.28 -13.44 16 21 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 22 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 23 N -0.88 -23.58 9.35 55.43 0.52 -23.06 16 24 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 C -0.12 -0.95 9.36 -39.58 -0.37 -1.32 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 35 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 38 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.41 4.18 7.94 -40.82 -0.32 3.85 16 42 H 0.41 7.59 5.63 -40.82 -0.23 7.36 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 46 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 50 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 51 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 52 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 423.19 15.07 6.38 6.38 Total: -1.00 -29.39 423.19 -9.57 -38.96 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -8.61 Total: 7.67 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.38 Total: -4.82 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.12 Total: -44.60 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.18 Total: -19.17 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -29.39 -9.57 -38.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422353203.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.207 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds