Wall clock time and date at job start Sat Apr 11 2020 07:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38230 * 120.00068 * 2 1 4 4 C 1.38236 * 119.99883 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.99991 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00089 * 359.97438 * 4 3 2 7 7 C 1.38237 * 119.99843 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99763 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47238 * 89.99937 * 8 7 6 10 10 N 1.46496 * 109.47294 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00447 * 179.97438 * 10 9 8 12 12 O 1.21350 * 119.99353 * 0.02562 * 11 10 9 13 13 C 1.49446 * 120.00046 * 179.97438 * 11 10 9 14 14 O 1.21345 * 120.00194 * 0.02562 * 13 11 10 15 15 N 1.34774 * 119.99676 * 179.97438 * 13 11 10 16 16 C 1.46506 * 119.99731 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.46949 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.47143 * 299.99805 * 17 16 15 19 19 C 1.53000 * 109.47701 * 59.99624 * 17 16 15 20 20 C 1.50696 * 109.47242 * 179.97438 * 17 16 15 21 21 H 1.08000 * 120.00103 * 359.97438 * 20 17 16 22 22 C 1.37882 * 120.00363 * 180.02562 * 20 17 16 23 23 N 1.31520 * 119.99700 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 120.00226 * 179.97438 * 22 20 17 25 25 H 1.48505 * 109.46819 * 60.00111 * 24 22 20 26 26 H 1.48494 * 109.47196 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47285 * 300.00175 * 24 22 20 28 28 C 1.38236 * 120.00188 * 0.24641 * 7 6 4 29 29 H 1.08991 * 109.47181 * 89.99887 * 1 2 3 30 30 H 1.09000 * 109.47228 * 210.00058 * 1 2 3 31 31 H 1.09002 * 109.46642 * 329.99546 * 1 2 3 32 32 H 1.07992 * 119.99956 * 0.02562 * 3 2 1 33 33 H 1.09006 * 109.46774 * 270.01537 * 5 4 3 34 34 H 1.08991 * 109.47483 * 30.01558 * 5 4 3 35 35 H 1.09000 * 109.47116 * 150.02175 * 5 4 3 36 36 H 1.07998 * 120.00589 * 179.97438 * 6 4 3 37 37 H 1.09001 * 109.46953 * 209.99549 * 8 7 6 38 38 H 1.09000 * 109.47318 * 329.99147 * 8 7 6 39 39 H 1.09001 * 109.46832 * 299.99686 * 9 8 7 40 40 H 1.09004 * 109.47261 * 59.99705 * 9 8 7 41 41 H 0.97006 * 119.99755 * 359.97438 * 10 9 8 42 42 H 0.96994 * 120.00416 * 359.97438 * 15 13 11 43 43 H 1.09001 * 109.47068 * 299.99552 * 16 15 13 44 44 H 1.08996 * 109.47564 * 60.00090 * 16 15 13 45 45 H 1.09002 * 109.47593 * 59.99977 * 18 17 16 46 46 H 1.09000 * 109.47312 * 180.02562 * 18 17 16 47 47 H 1.09004 * 109.46930 * 300.00065 * 18 17 16 48 48 H 1.09001 * 109.46503 * 59.99819 * 19 17 16 49 49 H 1.08996 * 109.47966 * 179.97438 * 19 17 16 50 50 H 1.09002 * 109.46994 * 300.00314 * 19 17 16 51 51 H 0.96999 * 120.00022 * 180.02562 * 23 22 20 52 52 H 1.07997 * 120.00153 * 179.72710 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5021 -0.0011 6 6 4.2717 -0.0001 -0.0005 7 6 3.5805 -1.1973 -0.0005 8 6 4.3340 -2.5024 -0.0011 9 6 4.5896 -2.9444 1.4411 10 7 5.3215 -4.2134 1.4406 11 6 5.6593 -4.7971 2.6075 12 8 5.3567 -4.2717 3.6586 13 6 6.4055 -6.0920 2.6068 14 8 6.7077 -6.6176 1.5557 15 7 6.7437 -6.6754 3.7738 16 6 7.4757 -7.9445 3.7731 17 6 7.7319 -8.3861 5.2154 18 6 8.5599 -7.3202 5.9358 19 6 6.3956 -8.5684 5.9380 20 6 8.4842 -9.6919 5.2148 21 1 8.7525 -10.1601 4.2793 22 6 8.8293 -10.2893 6.4086 23 7 8.5021 -9.7194 7.5478 24 14 9.7613 -11.9082 6.4078 25 1 11.0585 -11.7322 5.7067 26 1 10.0100 -12.3369 7.8076 27 1 8.9569 -12.9422 5.7085 28 6 2.1981 -1.1972 -0.0057 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1323 0.0004 33 1 4.5151 2.8166 -1.0290 34 1 3.7455 3.2618 0.5130 35 1 5.2869 2.3718 0.5120 36 1 5.3517 -0.0002 -0.0014 37 1 3.7447 -3.2619 -0.5148 38 1 5.2862 -2.3720 -0.5154 39 1 5.1789 -2.1849 1.9549 40 1 3.6374 -3.0748 1.9554 41 1 5.5631 -4.6336 0.6003 42 1 6.5032 -6.2547 4.6140 43 1 6.8856 -8.7040 3.2603 44 1 8.4275 -7.8147 3.2580 45 1 8.0154 -6.3759 5.9363 46 1 8.7428 -7.6350 6.9632 47 1 9.5119 -7.1903 5.4210 48 1 5.8058 -9.3278 5.4248 49 1 6.5781 -8.8835 6.9654 50 1 5.8511 -7.6242 5.9385 51 1 8.7451 -10.1395 8.3877 52 1 1.6581 -2.1325 -0.0101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422353203.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:28 Heat of formation + Delta-G solvation = -89.938409 kcal Electronic energy + Delta-G solvation = -29092.175256 eV Core-core repulsion = 25054.854365 eV Total energy + Delta-G solvation = -4037.320891 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.72453 -40.58542 -39.73996 -38.19338 -36.90571 -35.10496 -34.36700 -34.15239 -32.74037 -30.31529 -28.21576 -27.80611 -27.58739 -27.55086 -27.19874 -25.51618 -23.64197 -21.81389 -21.61231 -21.16440 -20.69006 -19.57825 -18.04593 -17.70270 -17.24957 -17.17605 -16.79498 -16.72386 -16.53783 -16.03142 -15.80740 -15.21801 -15.03260 -14.85806 -14.81491 -14.72862 -14.23009 -14.04610 -13.99736 -13.85589 -13.79442 -13.35526 -13.31363 -13.20953 -13.12210 -12.92687 -12.80157 -12.67957 -12.61548 -12.32718 -12.27135 -12.17268 -12.11801 -11.86918 -11.80465 -11.50449 -11.30230 -10.77913 -10.64990 -10.40418 -10.35861 -10.12115 -9.52275 -9.43242 -8.00610 -6.17195 0.34039 0.40371 0.46888 1.35445 1.46738 1.48103 1.54554 2.14159 2.45969 2.68246 2.81112 3.23134 3.45050 3.83174 3.83469 3.93822 3.99988 4.13658 4.27246 4.34579 4.44173 4.47503 4.51411 4.54574 4.67299 4.67979 4.72422 4.79936 4.81395 4.85132 4.92412 4.94697 5.04012 5.04986 5.05892 5.08501 5.15305 5.17215 5.21686 5.29900 5.37832 5.48074 5.64772 5.65240 5.66552 5.67973 5.74298 5.93376 6.11274 6.15236 6.19082 6.39073 6.41813 6.73522 6.86756 6.96094 7.50623 8.98436 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.001545 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.442031 B =18115.380126 C =18196.568963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.091 4.091 5 C -0.114 4.114 6 C -0.134 4.134 7 C -0.081 4.081 8 C -0.082 4.082 9 C 0.126 3.874 10 N -0.686 5.686 11 C 0.512 3.488 12 O -0.543 6.543 13 C 0.498 3.502 14 O -0.550 6.550 15 N -0.682 5.682 16 C 0.143 3.857 17 C 0.048 3.952 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.526 4.526 21 H 0.052 0.948 22 C 0.026 3.974 23 N -0.901 5.901 24 Si 0.949 3.051 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.276 1.276 28 C -0.134 4.134 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.422 0.578 42 H 0.413 0.587 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.029 0.971 46 H 0.063 0.937 47 H 0.023 0.977 48 H 0.023 0.977 49 H 0.063 0.937 50 H 0.029 0.971 51 H 0.260 0.740 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.297 23.033 -16.863 31.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.154 4.154 4 C -0.091 4.091 5 C -0.171 4.171 6 C -0.152 4.152 7 C -0.081 4.081 8 C -0.120 4.120 9 C 0.003 3.997 10 N -0.340 5.340 11 C 0.293 3.707 12 O -0.421 6.421 13 C 0.279 3.721 14 O -0.429 6.429 15 N -0.334 5.334 16 C 0.021 3.979 17 C 0.047 3.953 18 C -0.181 4.181 19 C -0.181 4.181 20 C -0.564 4.564 21 H 0.070 0.930 22 C -0.174 4.174 23 N -0.539 5.539 24 Si 0.775 3.225 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.152 4.152 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.260 0.740 42 H 0.251 0.749 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.048 0.952 46 H 0.082 0.918 47 H 0.042 0.958 48 H 0.042 0.958 49 H 0.082 0.918 50 H 0.048 0.952 51 H 0.069 0.931 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.282 23.005 -16.647 31.349 hybrid contribution 0.628 -1.090 0.338 1.302 sum -12.654 21.916 -16.309 30.106 Atomic orbital electron populations 1.20832 0.89849 1.03415 1.02992 1.20202 0.97232 0.93049 0.98666 1.21185 0.93806 0.98235 1.02150 1.20201 0.94183 0.96096 0.98666 1.20832 0.99997 0.93267 1.02994 1.21157 1.00382 0.91675 1.01981 1.19699 0.93776 0.94519 1.00136 1.20725 1.01832 0.94752 0.94667 1.21512 0.96364 0.83518 0.98282 1.45715 1.55911 1.24013 1.08357 1.20024 0.80376 0.85393 0.84938 1.90761 1.54473 1.64847 1.32008 1.20309 0.81044 0.86159 0.84605 1.90711 1.55379 1.65366 1.31449 1.46085 1.54721 1.23943 1.08639 1.21551 0.94432 0.82430 0.99530 1.18404 0.93631 0.94233 0.88986 1.21699 0.97839 0.95893 1.02656 1.21699 0.96122 0.97605 1.02661 1.21203 1.36433 1.06293 0.92521 0.92987 1.25507 0.96464 1.00055 0.95363 1.69922 1.46917 1.39666 0.97427 0.85762 0.79234 0.80683 0.76788 1.20106 1.21161 1.20097 1.21158 0.93701 0.98353 1.01979 0.90357 0.91159 0.90806 0.84883 0.90358 0.90805 0.91158 0.85180 0.88710 0.88709 0.91292 0.91304 0.74036 0.74939 0.92655 0.92647 0.95219 0.91810 0.95750 0.95757 0.91803 0.95226 0.93060 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 71.24 0.71 -0.40 16 2 C -0.09 -1.30 5.88 -19.86 -0.12 -1.42 16 3 C -0.14 -1.90 9.36 22.27 0.21 -1.69 16 4 C -0.09 -1.30 5.88 -19.87 -0.12 -1.42 16 5 C -0.11 -1.11 10.01 71.24 0.71 -0.40 16 6 C -0.13 -1.99 9.36 22.27 0.21 -1.78 16 7 C -0.08 -1.19 5.13 -19.86 -0.10 -1.29 16 8 C -0.08 -1.01 5.46 29.85 0.16 -0.85 16 9 C 0.13 2.21 5.66 86.38 0.49 2.70 16 10 N -0.69 -14.60 5.55 -464.42 -2.58 -17.18 16 11 C 0.51 15.07 7.89 87.27 0.69 15.75 16 12 O -0.54 -18.47 16.48 -3.25 -0.05 -18.53 16 13 C 0.50 16.92 7.89 87.27 0.69 17.61 16 14 O -0.55 -20.25 16.48 -3.23 -0.05 -20.30 16 15 N -0.68 -24.86 4.95 -464.42 -2.30 -27.16 16 16 C 0.14 5.94 4.50 86.38 0.39 6.33 16 17 C 0.05 2.24 0.50 -52.93 -0.03 2.21 16 18 C -0.12 -5.62 8.08 71.98 0.58 -5.03 16 19 C -0.12 -5.62 8.08 71.98 0.58 -5.04 16 20 C -0.53 -27.33 8.01 25.60 0.21 -27.12 16 21 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 22 C 0.03 1.36 5.15 84.66 0.44 1.79 16 23 N -0.90 -48.33 9.35 21.45 0.20 -48.13 16 24 Si 0.95 42.20 29.54 68.60 2.03 44.23 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 26 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 27 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 28 C -0.13 -1.99 9.36 22.27 0.21 -1.78 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 31 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 32 H 0.13 1.38 8.06 -2.91 -0.02 1.35 16 33 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.07 0.60 8.08 -2.39 -0.02 0.58 16 35 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 36 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 38 H 0.09 0.96 8.09 -2.39 -0.02 0.94 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.42 7.60 7.94 -92.70 -0.74 6.86 16 42 H 0.41 14.78 5.63 -92.71 -0.52 14.26 16 43 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 46 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 47 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 48 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 49 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 50 H 0.03 1.18 6.86 -2.39 -0.02 1.17 16 51 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 52 H 0.13 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -61.61 423.19 2.82 -58.80 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: -0.33 Total: 30.08 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 5.91 Total: -1.80 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -4.68 Total: -92.47 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -0.11 Total: -38.83 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -61.61 2.82 -58.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422353203.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.143 kcal (2) G-P(sol) polarization free energy of solvation -61.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds