Wall clock time and date at job start Sat Apr 11 2020 07:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38397 * 120.01242 * 2 1 4 4 C 1.38239 * 119.76487 * 179.70057 * 3 2 1 5 5 C 1.37974 * 120.35433 * 0.74387 * 4 3 2 6 6 C 1.39240 * 120.23346 * 359.43607 * 5 4 3 7 7 C 1.37701 * 120.00857 * 179.97438 * 2 1 3 8 8 C 1.51636 * 132.17645 * 359.12625 * 7 2 1 9 9 C 1.54706 * 101.94741 * 195.61359 * 8 7 2 10 10 H 1.08994 * 110.75235 * 93.27348 * 9 8 7 11 11 C 1.50698 * 110.75190 * 216.44798 * 9 8 7 12 12 O 1.21281 * 120.00374 * 114.99927 * 11 9 8 13 13 N 1.34781 * 119.99819 * 294.99570 * 11 9 8 14 14 C 1.46504 * 119.99926 * 0.02562 * 13 11 9 15 15 C 1.50699 * 109.47109 * 89.99834 * 14 13 11 16 16 H 1.08001 * 120.00171 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99901 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00223 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99871 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.46909 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46888 * 119.99811 * 19 17 15 22 22 H 1.48500 * 109.46784 * 239.99874 * 19 17 15 23 23 C 1.46496 * 120.00110 * 179.97438 * 13 11 9 24 24 C 1.53004 * 109.46699 * 90.00463 * 23 13 11 25 25 C 1.53004 * 109.46886 * 179.97438 * 24 23 13 26 26 N 1.46899 * 109.46946 * 179.97438 * 25 24 23 27 27 C 1.46902 * 110.99996 * 170.00256 * 26 25 24 28 28 C 1.46902 * 110.99973 * 293.95153 * 26 25 24 29 29 O 1.36144 * 129.90484 * 179.33552 * 6 5 4 30 30 H 1.08990 * 109.46980 * 270.02218 * 1 2 3 31 31 H 1.09003 * 109.46610 * 30.02439 * 1 2 3 32 32 H 1.09004 * 109.46601 * 150.01752 * 1 2 3 33 33 H 1.08001 * 120.11304 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.82280 * 180.45737 * 4 3 2 35 35 H 1.08002 * 119.88572 * 179.72292 * 5 4 3 36 36 H 1.08998 * 110.94080 * 313.77476 * 8 7 2 37 37 H 1.09001 * 110.93586 * 77.41741 * 8 7 2 38 38 H 1.08997 * 109.46850 * 210.00040 * 14 13 11 39 39 H 1.08998 * 109.47013 * 330.00088 * 14 13 11 40 40 H 0.96998 * 120.00218 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.47466 * 209.99922 * 23 13 11 42 42 H 1.08995 * 109.47200 * 330.00434 * 23 13 11 43 43 H 1.09005 * 109.47281 * 299.99497 * 24 23 13 44 44 H 1.08995 * 109.47318 * 60.00044 * 24 23 13 45 45 H 1.08996 * 109.46978 * 299.99790 * 25 24 23 46 46 H 1.09004 * 109.47170 * 59.99712 * 25 24 23 47 47 H 1.09006 * 109.47402 * 59.99562 * 27 26 25 48 48 H 1.08999 * 109.47609 * 179.97438 * 27 26 25 49 49 H 1.09005 * 109.46714 * 300.00120 * 27 26 25 50 50 H 1.08999 * 109.46985 * 60.00429 * 28 26 25 51 51 H 1.08999 * 109.46823 * 180.02562 * 28 26 25 52 52 H 1.09000 * 109.47255 * 300.00236 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1993 1.1984 0.0000 4 6 3.5817 1.1924 0.0063 5 6 4.2738 -0.0011 -0.0029 6 6 3.5849 -1.2111 -0.0068 7 6 2.1957 -1.1924 0.0005 8 6 1.7319 -2.6360 0.0183 9 6 3.0270 -3.3836 0.4147 10 1 3.0741 -3.5292 1.4938 11 6 3.1227 -4.7043 -0.3049 12 8 4.0113 -4.8943 -1.1081 13 7 2.2208 -5.6743 -0.0557 14 6 1.1470 -5.4446 0.9142 15 6 -0.0503 -4.8612 0.2092 16 1 -0.0150 -4.6793 -0.8547 17 6 -1.1907 -4.5587 0.9228 18 7 -1.2336 -4.7798 2.2186 19 14 -2.6752 -3.8362 0.0489 20 1 -2.3736 -3.6863 -1.3974 21 1 -3.8398 -4.7414 0.2210 22 1 -2.9919 -2.5062 0.6285 23 6 2.3134 -6.9579 -0.7556 24 6 3.1881 -7.9179 0.0534 25 6 3.2843 -9.2588 -0.6772 26 7 4.1246 -10.1802 0.0992 27 6 4.0501 -11.5437 -0.4423 28 6 5.5151 -9.7090 0.1495 29 8 4.0602 -2.4867 -0.0277 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5136 33 1 1.6613 2.1349 -0.0004 34 1 4.1228 2.1270 0.0138 35 1 5.3538 0.0031 -0.0025 36 1 0.9520 -2.7854 0.7650 37 1 1.3885 -2.9470 -0.9684 38 1 0.8696 -6.3903 1.3797 39 1 1.4918 -4.7500 1.6801 40 1 -2.0360 -4.5673 2.7205 41 1 1.3160 -7.3830 -0.8687 42 1 2.7565 -6.8042 -1.7395 43 1 4.1855 -7.4929 0.1664 44 1 2.7449 -8.0716 1.0373 45 1 2.2868 -9.6835 -0.7899 46 1 3.7272 -9.1054 -1.6613 47 1 4.3949 -11.5434 -1.4764 48 1 4.6817 -12.2052 0.1506 49 1 3.0187 -11.8942 -0.4034 50 1 5.5488 -8.7258 0.6187 51 1 6.1153 -10.4097 0.7298 52 1 5.9129 -9.6422 -0.8631 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448802825.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:32 Heat of formation + Delta-G solvation = -39.778581 kcal Electronic energy + Delta-G solvation = -31466.120604 eV Core-core repulsion = 27430.974806 eV Total energy + Delta-G solvation = -4035.145798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02700 -39.04902 -37.65417 -37.12398 -35.30510 -33.33810 -32.78678 -31.74289 -30.68002 -29.35724 -27.62641 -27.49437 -26.67600 -25.86220 -23.79254 -23.12606 -22.30698 -21.69325 -20.65550 -20.48240 -18.69362 -17.22790 -16.72202 -16.36437 -16.30905 -15.83356 -15.57389 -15.42861 -15.00489 -14.73602 -14.61671 -14.11096 -14.04150 -13.65792 -13.43331 -13.27472 -13.20685 -12.66469 -12.57279 -12.44274 -12.38189 -12.22152 -12.14513 -11.98591 -11.80283 -11.67380 -11.50287 -11.40777 -11.32420 -11.19451 -11.08037 -10.95220 -10.85225 -10.66040 -10.45186 -10.29218 -10.14746 -9.81378 -9.13433 -8.65961 -8.38714 -8.36455 -7.86599 -7.80714 -6.29397 -4.35795 1.54883 1.61262 3.12837 3.13964 3.18064 3.23857 3.28733 3.85046 3.96266 4.16314 4.25125 4.81040 4.96546 5.03301 5.04901 5.10997 5.13887 5.19787 5.25764 5.32942 5.36098 5.44208 5.50825 5.54639 5.59778 5.61902 5.66332 5.73206 5.75759 5.77603 5.84805 5.88281 5.90532 5.97689 6.10084 6.12029 6.32927 6.40780 6.44254 6.53652 6.56734 6.61469 6.65912 6.73877 6.82357 6.90511 7.01957 7.04012 7.07954 7.38708 7.51816 7.64858 7.91618 8.15325 8.65868 8.84504 9.30155 10.76899 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.009490 B = 0.003665 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.661063 B = 7637.204052 C =10154.557438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.034 4.034 3 C -0.156 4.156 4 C -0.090 4.090 5 C -0.149 4.149 6 C 0.109 3.891 7 C -0.166 4.166 8 C -0.084 4.084 9 C 0.072 3.928 10 H 0.107 0.893 11 C 0.522 3.478 12 O -0.553 6.553 13 N -0.587 5.587 14 C 0.232 3.768 15 C -0.537 4.537 16 H 0.064 0.936 17 C 0.069 3.931 18 N -0.886 5.886 19 Si 0.886 3.114 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.279 1.279 23 C 0.124 3.876 24 C -0.130 4.130 25 C 0.059 3.941 26 N -0.548 5.548 27 C 0.025 3.975 28 C 0.022 3.978 29 O -0.283 6.283 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.266 0.734 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.034 0.966 47 H 0.022 0.978 48 H 0.065 0.935 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.064 0.936 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 1.075 -2.290 6.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.035 4.035 3 C -0.174 4.174 4 C -0.108 4.108 5 C -0.168 4.168 6 C 0.063 3.937 7 C -0.166 4.166 8 C -0.121 4.121 9 C 0.013 3.987 10 H 0.125 0.875 11 C 0.309 3.691 12 O -0.432 6.432 13 N -0.319 5.319 14 C 0.112 3.888 15 C -0.575 4.575 16 H 0.082 0.918 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.713 3.287 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.205 1.205 23 C 0.001 3.999 24 C -0.169 4.169 25 C -0.069 4.069 26 N -0.272 5.272 27 C -0.123 4.123 28 C -0.126 4.126 29 O -0.196 6.196 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.112 0.888 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.052 0.948 47 H 0.041 0.959 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.083 0.917 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.610 0.858 -2.117 6.993 hybrid contribution -0.765 0.307 -1.058 1.341 sum 5.845 1.165 -3.174 6.753 Atomic orbital electron populations 1.20824 0.91017 1.02837 1.02789 1.19128 0.95991 0.91106 0.97235 1.20854 0.94045 0.97000 1.05529 1.20721 0.94114 0.96700 0.99248 1.20137 0.99846 0.88956 1.07831 1.19658 0.92190 0.85836 0.96014 1.20964 0.93559 0.96044 1.06077 1.21955 0.97053 0.87401 1.05670 1.23109 0.86872 0.89446 0.99285 0.87526 1.19845 0.81904 0.84778 0.82601 1.90637 1.35240 1.81341 1.35960 1.48080 1.28702 1.12418 1.42659 1.19573 0.83932 0.98284 0.86979 1.21491 0.97866 1.42831 0.95352 0.91793 1.24881 0.98357 0.95501 0.94731 1.69920 1.29037 1.47125 1.06300 0.86613 0.82801 0.79142 0.80139 1.19477 1.20795 1.20484 1.21229 1.00176 0.83102 0.95440 1.21955 1.00925 0.93600 1.00405 1.22074 0.97469 0.92923 0.94467 1.61972 1.09632 1.02354 1.53204 1.22370 1.02375 0.90148 0.97438 1.22430 0.88624 1.01615 0.99966 1.86883 1.37854 1.12938 1.81915 0.90758 0.91769 0.90966 0.85944 0.85631 0.85876 0.85397 0.88794 0.94003 0.94560 0.92404 0.90007 0.91102 0.91839 0.90737 0.90561 0.94817 0.95905 0.91613 0.91340 0.90845 0.91746 0.95764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 9.91 36.01 0.36 -1.34 16 2 C -0.03 -0.54 5.87 -104.76 -0.61 -1.16 16 3 C -0.16 -2.11 9.73 -39.52 -0.38 -2.50 16 4 C -0.09 -1.17 10.02 -39.68 -0.40 -1.57 16 5 C -0.15 -2.27 10.06 -39.31 -0.40 -2.66 16 6 C 0.11 1.99 7.03 -38.95 -0.27 1.71 16 7 C -0.17 -2.99 6.07 -104.10 -0.63 -3.62 16 8 C -0.08 -1.62 4.05 -26.52 -0.11 -1.73 16 9 C 0.07 1.42 3.08 -26.99 -0.08 1.34 16 10 H 0.11 1.99 7.35 -51.93 -0.38 1.61 16 11 C 0.52 11.03 7.05 -10.98 -0.08 10.95 16 12 O -0.55 -12.96 16.15 -13.51 -0.22 -13.18 16 13 N -0.59 -11.72 2.46 -175.06 -0.43 -12.15 16 14 C 0.23 5.03 4.70 -5.19 -0.02 5.01 16 15 C -0.54 -12.47 6.25 -34.44 -0.22 -12.68 16 16 H 0.06 1.53 7.40 -52.49 -0.39 1.14 16 17 C 0.07 1.66 5.38 -17.82 -0.10 1.56 16 18 N -0.89 -22.53 13.29 55.43 0.74 -21.79 16 19 Si 0.89 18.99 29.54 -169.99 -5.02 13.97 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 C 0.12 2.18 5.41 -4.04 -0.02 2.15 16 24 C -0.13 -2.03 5.46 -26.73 -0.15 -2.18 16 25 C 0.06 0.79 4.96 -3.82 -0.02 0.77 16 26 N -0.55 -7.04 5.02 -251.25 -1.26 -8.31 16 27 C 0.03 0.26 9.57 60.07 0.57 0.83 16 28 C 0.02 0.26 9.32 60.07 0.56 0.82 16 29 O -0.28 -5.76 10.39 -39.26 -0.41 -6.17 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 32 H 0.07 1.13 7.79 -51.93 -0.40 0.73 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.13 2.63 6.20 -51.93 -0.32 2.31 16 37 H 0.09 1.93 7.28 -51.93 -0.38 1.55 16 38 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 39 H 0.04 0.81 6.04 -51.93 -0.31 0.50 16 40 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 41 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 42 H 0.07 1.27 7.42 -51.93 -0.39 0.89 16 43 H 0.06 1.07 6.55 -51.93 -0.34 0.73 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 46 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 47 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 49 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 50 H 0.07 0.94 6.47 -51.93 -0.34 0.61 16 51 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 52 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 414.40 15.07 6.24 6.24 Total: -1.00 -27.93 414.40 -11.06 -39.00 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -8.71 Total: 6.68 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.00 Total: -4.30 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.95 Total: -42.25 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.63 Total: -19.35 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -27.93 -11.06 -39.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448802825.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.783 kcal (2) G-P(sol) polarization free energy of solvation -27.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds