Wall clock time and date at job start Sat Apr 11 2020 07:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38397 * 120.01242 * 2 1 4 4 C 1.38239 * 119.76487 * 179.70057 * 3 2 1 5 5 C 1.37974 * 120.35433 * 0.74387 * 4 3 2 6 6 C 1.39240 * 120.23346 * 359.43607 * 5 4 3 7 7 C 1.37701 * 120.00857 * 179.97438 * 2 1 3 8 8 C 1.51636 * 132.17645 * 359.12625 * 7 2 1 9 9 C 1.54706 * 101.94741 * 195.61359 * 8 7 2 10 10 H 1.08994 * 110.75235 * 93.27348 * 9 8 7 11 11 C 1.50698 * 110.75190 * 216.44798 * 9 8 7 12 12 O 1.21281 * 120.00374 * 114.99927 * 11 9 8 13 13 N 1.34781 * 119.99819 * 294.99570 * 11 9 8 14 14 C 1.46504 * 119.99926 * 0.02562 * 13 11 9 15 15 C 1.50699 * 109.47109 * 89.99834 * 14 13 11 16 16 H 1.08001 * 120.00171 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99901 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00223 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99871 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.46909 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46888 * 119.99811 * 19 17 15 22 22 H 1.48500 * 109.46784 * 239.99874 * 19 17 15 23 23 C 1.46496 * 120.00110 * 179.97438 * 13 11 9 24 24 C 1.53004 * 109.46699 * 90.00463 * 23 13 11 25 25 C 1.53004 * 109.46886 * 179.97438 * 24 23 13 26 26 N 1.46899 * 109.46946 * 179.97438 * 25 24 23 27 27 C 1.46902 * 110.99996 * 170.00256 * 26 25 24 28 28 C 1.46902 * 110.99973 * 293.95153 * 26 25 24 29 29 O 1.36144 * 129.90484 * 179.33552 * 6 5 4 30 30 H 1.08990 * 109.46980 * 270.02218 * 1 2 3 31 31 H 1.09003 * 109.46610 * 30.02439 * 1 2 3 32 32 H 1.09004 * 109.46601 * 150.01752 * 1 2 3 33 33 H 1.08001 * 120.11304 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.82280 * 180.45737 * 4 3 2 35 35 H 1.08002 * 119.88572 * 179.72292 * 5 4 3 36 36 H 1.08998 * 110.94080 * 313.77476 * 8 7 2 37 37 H 1.09001 * 110.93586 * 77.41741 * 8 7 2 38 38 H 1.08997 * 109.46850 * 210.00040 * 14 13 11 39 39 H 1.08998 * 109.47013 * 330.00088 * 14 13 11 40 40 H 0.96998 * 120.00218 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.47466 * 209.99922 * 23 13 11 42 42 H 1.08995 * 109.47200 * 330.00434 * 23 13 11 43 43 H 1.09005 * 109.47281 * 299.99497 * 24 23 13 44 44 H 1.08995 * 109.47318 * 60.00044 * 24 23 13 45 45 H 1.08996 * 109.46978 * 299.99790 * 25 24 23 46 46 H 1.09004 * 109.47170 * 59.99712 * 25 24 23 47 47 H 1.09006 * 109.47402 * 59.99562 * 27 26 25 48 48 H 1.08999 * 109.47609 * 179.97438 * 27 26 25 49 49 H 1.09005 * 109.46714 * 300.00120 * 27 26 25 50 50 H 1.08999 * 109.46985 * 60.00429 * 28 26 25 51 51 H 1.08999 * 109.46823 * 180.02562 * 28 26 25 52 52 H 1.09000 * 109.47255 * 300.00236 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1993 1.1984 0.0000 4 6 3.5817 1.1924 0.0063 5 6 4.2738 -0.0011 -0.0029 6 6 3.5849 -1.2111 -0.0068 7 6 2.1957 -1.1924 0.0005 8 6 1.7319 -2.6360 0.0183 9 6 3.0270 -3.3836 0.4147 10 1 3.0741 -3.5292 1.4938 11 6 3.1227 -4.7043 -0.3049 12 8 4.0113 -4.8943 -1.1081 13 7 2.2208 -5.6743 -0.0557 14 6 1.1470 -5.4446 0.9142 15 6 -0.0503 -4.8612 0.2092 16 1 -0.0150 -4.6793 -0.8547 17 6 -1.1907 -4.5587 0.9228 18 7 -1.2336 -4.7798 2.2186 19 14 -2.6752 -3.8362 0.0489 20 1 -2.3736 -3.6863 -1.3974 21 1 -3.8398 -4.7414 0.2210 22 1 -2.9919 -2.5062 0.6285 23 6 2.3134 -6.9579 -0.7556 24 6 3.1881 -7.9179 0.0534 25 6 3.2843 -9.2588 -0.6772 26 7 4.1246 -10.1802 0.0992 27 6 4.0501 -11.5437 -0.4423 28 6 5.5151 -9.7090 0.1495 29 8 4.0602 -2.4867 -0.0277 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5136 33 1 1.6613 2.1349 -0.0004 34 1 4.1228 2.1270 0.0138 35 1 5.3538 0.0031 -0.0025 36 1 0.9520 -2.7854 0.7650 37 1 1.3885 -2.9470 -0.9684 38 1 0.8696 -6.3903 1.3797 39 1 1.4918 -4.7500 1.6801 40 1 -2.0360 -4.5673 2.7205 41 1 1.3160 -7.3830 -0.8687 42 1 2.7565 -6.8042 -1.7395 43 1 4.1855 -7.4929 0.1664 44 1 2.7449 -8.0716 1.0373 45 1 2.2868 -9.6835 -0.7899 46 1 3.7272 -9.1054 -1.6613 47 1 4.3949 -11.5434 -1.4764 48 1 4.6817 -12.2052 0.1506 49 1 3.0187 -11.8942 -0.4034 50 1 5.5488 -8.7258 0.6187 51 1 6.1153 -10.4097 0.7298 52 1 5.9129 -9.6422 -0.8631 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448802825.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:31 Heat of formation + Delta-G solvation = -53.572610 kcal Electronic energy + Delta-G solvation = -31466.718758 eV Core-core repulsion = 27430.974806 eV Total energy + Delta-G solvation = -4035.743952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.46304 -40.61916 -38.76966 -38.39585 -37.01320 -34.90843 -34.25253 -33.17624 -32.02797 -30.68296 -29.28933 -28.51674 -27.90171 -27.13016 -25.18930 -24.91374 -23.59759 -22.94001 -21.81306 -21.76918 -20.31881 -18.79335 -18.50575 -17.98174 -17.63658 -17.30158 -16.75415 -16.57726 -16.37643 -16.18993 -15.96566 -15.51098 -15.31069 -14.90780 -14.69411 -14.58923 -14.56719 -14.32090 -14.09337 -13.90296 -13.67971 -13.47808 -13.32088 -13.23148 -13.10565 -12.94419 -12.87294 -12.71682 -12.67190 -12.56501 -12.42395 -12.37305 -12.36005 -12.08993 -11.91367 -11.68704 -11.65658 -11.53653 -10.85920 -10.53472 -9.60895 -9.58404 -9.34674 -9.10900 -8.18498 -6.29396 0.35019 0.39852 1.40280 1.43472 1.48354 1.54585 1.67917 2.40089 2.53446 2.77391 3.01848 3.12586 3.34113 3.53230 3.74771 3.85804 3.91376 4.02206 4.08094 4.12763 4.19800 4.30209 4.37860 4.40472 4.47148 4.48458 4.53792 4.58648 4.64350 4.71951 4.72269 4.76143 4.77432 4.80738 4.85657 4.92469 4.96775 5.00189 5.07704 5.12976 5.18343 5.26552 5.26723 5.41160 5.47891 5.59141 5.64901 5.72452 5.78944 6.01836 6.04099 6.09652 6.20873 6.41144 6.77875 7.11506 7.39627 8.87816 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.009490 B = 0.003665 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.661063 B = 7637.204052 C =10154.557438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.046 4.046 3 C -0.145 4.145 4 C -0.077 4.077 5 C -0.151 4.151 6 C 0.074 3.926 7 C -0.191 4.191 8 C -0.068 4.068 9 C 0.073 3.927 10 H 0.111 0.889 11 C 0.520 3.480 12 O -0.579 6.579 13 N -0.585 5.585 14 C 0.247 3.753 15 C -0.532 4.532 16 H 0.054 0.946 17 C 0.035 3.965 18 N -0.914 5.914 19 Si 0.936 3.064 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.122 3.878 24 C -0.115 4.115 25 C 0.066 3.934 26 N -0.564 5.564 27 C 0.025 3.975 28 C 0.023 3.977 29 O -0.304 6.304 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.140 0.860 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.030 0.970 39 H 0.028 0.972 40 H 0.268 0.732 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.035 0.965 47 H 0.028 0.972 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.056 0.944 51 H 0.082 0.918 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.174 2.853 -2.666 7.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.047 4.047 3 C -0.163 4.163 4 C -0.094 4.094 5 C -0.170 4.170 6 C 0.029 3.971 7 C -0.192 4.192 8 C -0.105 4.105 9 C 0.014 3.986 10 H 0.129 0.871 11 C 0.307 3.693 12 O -0.461 6.461 13 N -0.315 5.315 14 C 0.127 3.873 15 C -0.571 4.571 16 H 0.072 0.928 17 C -0.166 4.166 18 N -0.553 5.553 19 Si 0.762 3.238 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.001 4.001 24 C -0.154 4.154 25 C -0.063 4.063 26 N -0.288 5.288 27 C -0.123 4.123 28 C -0.125 4.125 29 O -0.218 6.218 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.178 0.822 34 H 0.188 0.812 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.104 0.896 46 H 0.053 0.947 47 H 0.047 0.953 48 H 0.098 0.902 49 H 0.092 0.908 50 H 0.075 0.925 51 H 0.101 0.899 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 6.531 2.626 -2.496 7.469 hybrid contribution -0.698 -0.168 -0.942 1.184 sum 5.833 2.457 -3.438 7.203 Atomic orbital electron populations 1.20848 0.90298 1.03262 1.02979 1.19453 0.96799 0.91207 0.97197 1.21324 0.94529 0.97346 1.03115 1.21252 0.94188 0.97401 0.96568 1.20562 1.00987 0.88516 1.06934 1.20066 0.92750 0.85801 0.98499 1.20974 0.93871 0.95817 1.08502 1.21604 0.96135 0.89161 1.03624 1.23045 0.87389 0.88968 0.99213 0.87133 1.20112 0.81542 0.85339 0.82314 1.90603 1.36283 1.81929 1.37264 1.48098 1.27945 1.13234 1.42221 1.19285 0.83915 0.97210 0.86925 1.21512 0.98326 1.42407 0.94806 0.92753 1.25407 1.00349 0.95741 0.95113 1.69998 1.29723 1.48266 1.07352 0.85822 0.80022 0.78780 0.79140 1.19580 1.20921 1.19594 1.21381 1.00945 0.82430 0.95341 1.21770 0.99347 0.94496 0.99792 1.21967 0.98371 0.91820 0.94117 1.61962 1.09891 1.03369 1.53551 1.22433 1.03200 0.88715 0.97931 1.22426 0.88583 1.01296 1.00221 1.86828 1.38143 1.14200 1.82653 0.90647 0.88724 0.93146 0.82215 0.81236 0.84219 0.87212 0.90974 0.95155 0.95401 0.92305 0.89375 0.91515 0.93277 0.91743 0.89561 0.94668 0.95321 0.90221 0.90752 0.92478 0.89943 0.95589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.21 9.91 71.24 0.71 -2.50 16 2 C -0.05 -1.40 5.87 -19.95 -0.12 -1.52 16 3 C -0.15 -3.38 9.73 22.31 0.22 -3.16 16 4 C -0.08 -1.69 10.02 22.21 0.22 -1.47 16 5 C -0.15 -4.33 10.06 22.45 0.23 -4.10 16 6 C 0.07 2.71 7.03 22.68 0.16 2.87 16 7 C -0.19 -6.99 6.07 -19.53 -0.12 -7.11 16 8 C -0.07 -2.77 4.05 30.73 0.12 -2.65 16 9 C 0.07 3.05 3.08 30.43 0.09 3.14 16 10 H 0.11 4.41 7.35 -2.39 -0.02 4.39 16 11 C 0.52 23.10 7.05 87.66 0.62 23.72 16 12 O -0.58 -28.41 16.15 15.19 0.25 -28.16 16 13 N -0.58 -24.47 2.46 -826.16 -2.03 -26.50 16 14 C 0.25 11.18 4.70 85.63 0.40 11.58 16 15 C -0.53 -25.47 6.25 25.60 0.16 -25.31 16 16 H 0.05 2.69 7.40 -2.91 -0.02 2.67 16 17 C 0.04 1.71 5.38 84.65 0.46 2.16 16 18 N -0.91 -47.21 13.29 21.45 0.28 -46.93 16 19 Si 0.94 39.17 29.54 68.60 2.03 41.19 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 23 C 0.12 4.42 5.41 86.38 0.47 4.89 16 24 C -0.12 -3.71 5.46 30.60 0.17 -3.55 16 25 C 0.07 1.75 4.96 86.30 0.43 2.18 16 26 N -0.56 -14.08 5.02 -948.82 -4.76 -18.85 16 27 C 0.02 0.47 9.57 127.69 1.22 1.70 16 28 C 0.02 0.54 9.32 127.69 1.19 1.73 16 29 O -0.30 -12.91 10.39 -76.97 -0.80 -13.71 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 1.96 8.09 -2.39 -0.02 1.94 16 32 H 0.05 1.58 7.79 -2.38 -0.02 1.56 16 33 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.11 4.79 6.20 -2.39 -0.01 4.77 16 37 H 0.07 3.17 7.28 -2.39 -0.02 3.15 16 38 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 39 H 0.03 1.32 6.04 -2.39 -0.01 1.30 16 40 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 41 H 0.09 3.06 8.07 -2.39 -0.02 3.04 16 42 H 0.07 2.48 7.42 -2.39 -0.02 2.47 16 43 H 0.05 1.72 6.55 -2.38 -0.02 1.71 16 44 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.09 2.12 8.06 -2.39 -0.02 2.10 16 46 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 47 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 48 H 0.08 1.29 8.12 -2.39 -0.02 1.27 16 49 H 0.07 1.32 8.12 -2.38 -0.02 1.30 16 50 H 0.06 1.50 6.47 -2.39 -0.02 1.49 16 51 H 0.08 1.60 8.12 -2.39 -0.02 1.58 16 52 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -61.86 414.40 2.48 -59.38 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.89 Total: 30.97 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 6.62 Total: 2.60 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -6.51 Total: -92.27 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -0.55 Total: -41.88 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.19 kcal Total: -61.86 2.48 -59.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448802825.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.804 kcal (2) G-P(sol) polarization free energy of solvation -61.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds