Wall clock time and date at job start Sat Apr 11 2020 07:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99731 * 2 1 4 4 C 1.38211 * 120.00115 * 179.97438 * 3 2 1 5 5 C 1.38262 * 119.99732 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99880 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 265.00270 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.47299 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00376 * 179.97438 * 9 8 7 11 11 O 1.21347 * 119.99781 * 359.97438 * 10 9 8 12 12 C 1.49444 * 120.00018 * 180.02562 * 10 9 8 13 13 O 1.21347 * 120.00201 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00018 * 180.02562 * 12 10 9 15 15 C 1.46500 * 120.00376 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47473 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47232 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47084 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99751 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99788 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99508 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00233 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46640 * 90.00143 * 22 20 18 24 24 H 1.48502 * 109.47279 * 210.00076 * 22 20 18 25 25 H 1.48501 * 109.47096 * 330.00344 * 22 20 18 26 26 C 1.38210 * 120.00106 * 0.25347 * 5 4 3 27 27 C 1.50699 * 120.00166 * 179.72002 * 26 5 4 28 28 C 1.38206 * 120.00141 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47271 * 90.00384 * 1 2 3 30 30 H 1.09002 * 109.46819 * 210.00090 * 1 2 3 31 31 H 1.09001 * 109.47500 * 329.99729 * 1 2 3 32 32 H 1.07998 * 120.00075 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.00450 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.47152 * 145.00042 * 6 5 4 35 35 H 1.09001 * 109.46980 * 25.00142 * 6 5 4 36 36 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 37 37 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 38 38 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 39 39 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 40 40 H 0.97003 * 119.99983 * 359.97438 * 9 8 7 41 41 H 0.97003 * 119.99640 * 359.97438 * 14 12 10 42 42 H 1.09001 * 109.46596 * 300.00102 * 15 14 12 43 43 H 1.09002 * 109.47129 * 59.99747 * 15 14 12 44 44 H 1.08998 * 109.47076 * 300.00403 * 16 15 14 45 45 H 1.09002 * 109.47153 * 59.99757 * 16 15 14 46 46 H 1.09001 * 109.47375 * 299.99867 * 17 16 15 47 47 H 1.09002 * 109.47045 * 59.99942 * 17 16 15 48 48 H 0.97002 * 119.99179 * 180.02562 * 21 20 18 49 49 H 1.09004 * 109.46714 * 89.99954 * 27 26 5 50 50 H 1.09001 * 109.47281 * 210.00054 * 27 26 5 51 51 H 1.09001 * 109.47263 * 330.00636 * 27 26 5 52 52 H 1.07998 * 120.00511 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0002 0.0005 7 6 6.2886 -0.1255 -1.4365 8 6 7.8186 -0.1261 -1.4364 9 7 8.3070 -0.2470 -2.8123 10 6 9.6321 -0.2685 -3.0577 11 8 10.4206 -0.1872 -2.1389 12 6 10.1302 -0.3912 -4.4613 13 8 9.3417 -0.4720 -5.3801 14 7 11.4553 -0.4133 -4.7067 15 6 11.9437 -0.5342 -6.0825 16 6 13.4736 -0.5354 -6.0825 17 6 13.9836 -0.6623 -7.5193 18 6 15.4907 -0.6629 -7.5193 19 1 16.0306 -0.5814 -6.5876 20 6 16.1800 -0.7675 -8.7088 21 7 17.4952 -0.7685 -8.7086 22 14 15.2460 -0.9093 -10.3203 23 1 14.9986 0.4479 -10.8700 24 1 16.0486 -1.6973 -11.2899 25 1 13.9484 -1.5910 -10.0821 26 6 3.5807 -1.1969 -0.0053 27 6 4.3342 -2.5019 -0.0117 28 6 2.1980 -1.1969 -0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5139 32 1 1.6582 2.1326 -0.0004 33 1 4.1203 2.1328 0.0010 34 1 6.1421 -0.8417 0.5900 35 1 6.1420 0.9316 0.4349 36 1 5.9254 -1.0569 -1.8708 37 1 5.9253 0.7163 -2.0259 38 1 8.1823 0.8052 -1.0020 39 1 8.1817 -0.9681 -0.8471 40 1 7.6767 -0.3115 -3.5468 41 1 12.0856 -0.3491 -3.9721 42 1 11.5799 -1.4656 -6.5166 43 1 11.5806 0.3076 -6.6722 44 1 13.8377 0.3957 -5.6482 45 1 13.8363 -1.3774 -5.4929 46 1 13.6196 -1.5937 -7.9532 47 1 13.6210 0.1795 -8.1093 48 1 17.9801 -0.8418 -9.5455 49 1 4.5158 -2.8215 1.0145 50 1 3.7451 -3.2591 -0.5292 51 1 5.2867 -2.3691 -0.5248 52 1 1.6582 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585692173.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:58 Heat of formation + Delta-G solvation = -84.608590 kcal Electronic energy + Delta-G solvation = -27986.026282 eV Core-core repulsion = 23948.936509 eV Total energy + Delta-G solvation = -4037.089773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.69113 -40.21254 -38.64269 -36.61856 -35.77011 -34.68980 -33.34569 -32.88079 -31.84375 -31.48520 -28.58284 -27.65970 -27.52626 -25.63474 -24.05926 -22.66958 -22.33217 -22.04939 -20.79805 -20.46834 -19.98521 -18.43413 -17.05533 -16.76417 -16.71652 -16.39398 -16.14857 -15.54859 -15.40496 -15.27627 -15.03187 -14.64473 -14.57282 -14.20113 -13.76259 -13.73181 -13.71086 -13.59192 -13.31751 -13.11334 -12.97009 -12.72906 -12.55540 -12.45893 -12.16692 -12.08830 -11.97704 -11.85536 -11.70828 -11.51951 -11.19718 -11.16785 -11.11928 -10.92540 -10.18480 -9.98835 -9.79336 -9.53960 -9.53375 -9.24520 -9.17405 -9.07857 -8.82898 -8.56630 -6.07104 -4.06084 0.88136 0.96728 1.35992 2.28091 3.16497 3.25376 3.30110 3.37833 3.41275 3.60310 4.13772 4.27412 4.39762 4.42978 4.43342 4.47091 4.51330 4.71374 4.75446 4.80199 4.87850 5.03778 5.09059 5.11261 5.14004 5.19048 5.26747 5.29301 5.29718 5.39100 5.42612 5.43194 5.54929 5.56153 5.65664 5.73980 5.81573 5.92454 5.93945 6.03346 6.15177 6.16582 6.23841 6.38253 6.53079 6.60536 6.73368 6.84615 7.19536 7.32823 7.32921 7.66003 7.74316 7.97539 8.49392 8.97085 9.54821 11.06186 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.028035 B = 0.001258 C = 0.001237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.522770 B =22253.788367 C =22629.160828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.126 4.126 4 C -0.108 4.108 5 C -0.089 4.089 6 C -0.077 4.077 7 C -0.128 4.128 8 C 0.117 3.883 9 N -0.705 5.705 10 C 0.508 3.492 11 O -0.519 6.519 12 C 0.501 3.499 13 O -0.528 6.528 14 N -0.691 5.691 15 C 0.111 3.889 16 C -0.115 4.115 17 C -0.010 4.010 18 C -0.523 4.523 19 H 0.073 0.927 20 C 0.067 3.933 21 N -0.902 5.902 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.265 1.265 26 C -0.076 4.076 27 C -0.121 4.121 28 C -0.121 4.121 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.413 0.587 41 H 0.413 0.587 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.019 0.981 47 H 0.015 0.985 48 H 0.263 0.737 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.072 0.928 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.912 1.046 21.442 40.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.144 4.144 4 C -0.126 4.126 5 C -0.089 4.089 6 C -0.115 4.115 7 C -0.166 4.166 8 C -0.007 4.007 9 N -0.359 5.359 10 C 0.289 3.711 11 O -0.394 6.394 12 C 0.281 3.719 13 O -0.405 6.405 14 N -0.343 5.343 15 C -0.011 4.011 16 C -0.153 4.153 17 C -0.048 4.048 18 C -0.561 4.561 19 H 0.091 0.909 20 C -0.134 4.134 21 N -0.541 5.541 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.189 1.189 26 C -0.076 4.076 27 C -0.178 4.178 28 C -0.139 4.139 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.249 0.751 41 H 0.249 0.751 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.038 0.962 47 H 0.033 0.967 48 H 0.073 0.927 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.091 0.909 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -34.724 1.028 21.322 40.761 hybrid contribution -0.385 0.013 -0.921 0.998 sum -35.109 1.040 20.401 40.620 Atomic orbital electron populations 1.20798 0.91267 1.02739 1.02379 1.19909 0.96042 0.93184 0.99545 1.21011 0.94210 0.97512 1.01637 1.21044 0.94143 0.97524 0.99885 1.19657 0.95264 0.92673 1.01279 1.20488 0.91077 1.03573 0.96350 1.21818 0.93609 1.03661 0.97530 1.21500 0.93819 1.02948 0.82383 1.45756 1.06764 1.73061 1.10274 1.20306 0.83276 0.77768 0.89799 1.90771 1.55224 1.47657 1.45776 1.20021 0.83972 0.79002 0.88946 1.90755 1.55280 1.48892 1.45534 1.46021 1.06092 1.70613 1.11568 1.21851 0.96679 1.02306 0.80260 1.21742 0.90117 1.02183 1.01284 1.19503 0.97371 0.96687 0.91268 1.21096 0.89259 1.50749 0.95025 0.90926 1.25022 0.94733 0.94472 0.99169 1.69915 1.06330 1.50736 1.27142 0.86780 0.80390 0.78542 0.83597 1.20244 1.21346 1.18916 1.19775 0.93599 0.94946 0.99324 1.20903 1.00377 0.93977 1.02526 1.20916 0.93499 0.97587 1.01908 0.91141 0.91593 0.91562 0.86189 0.85994 0.90304 0.90490 0.90668 0.90696 0.90776 0.90803 0.75060 0.75127 0.91101 0.91102 0.91805 0.91782 0.96241 0.96679 0.92676 0.91039 0.91509 0.90923 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 10.01 36.00 0.36 -0.14 16 2 C -0.09 -0.56 5.88 -104.63 -0.62 -1.17 16 3 C -0.13 -0.81 9.70 -39.58 -0.38 -1.19 16 4 C -0.11 -0.70 9.68 -39.58 -0.38 -1.08 16 5 C -0.09 -0.57 5.13 -104.62 -0.54 -1.11 16 6 C -0.08 -0.38 4.65 -27.88 -0.13 -0.51 16 7 C -0.13 -0.67 5.12 -26.73 -0.14 -0.81 16 8 C 0.12 0.82 5.67 -4.04 -0.02 0.80 16 9 N -0.70 -6.55 5.55 -60.73 -0.34 -6.88 16 10 C 0.51 6.35 7.89 -11.59 -0.09 6.26 16 11 O -0.52 -7.52 16.48 5.50 0.09 -7.43 16 12 C 0.50 7.12 7.89 -11.59 -0.09 7.03 16 13 O -0.53 -8.51 16.48 5.50 0.09 -8.41 16 14 N -0.69 -9.86 5.55 -60.73 -0.34 -10.19 16 15 C 0.11 1.78 5.67 -4.04 -0.02 1.76 16 16 C -0.12 -2.13 5.27 -26.73 -0.14 -2.27 16 17 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 18 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 19 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 20 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 21 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 22 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 26 C -0.08 -0.50 5.88 -104.62 -0.62 -1.12 16 27 C -0.12 -0.60 9.22 36.00 0.33 -0.27 16 28 C -0.12 -0.80 9.36 -39.58 -0.37 -1.17 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 31 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 32 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 33 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.08 0.36 7.01 -51.93 -0.36 -0.01 16 35 H 0.08 0.34 8.05 -51.93 -0.42 -0.08 16 36 H 0.07 0.39 6.88 -51.93 -0.36 0.04 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.41 3.43 7.94 -40.82 -0.32 3.10 16 41 H 0.41 5.41 7.94 -40.82 -0.32 5.09 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 47 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 51 H 0.07 0.34 5.40 -51.93 -0.28 0.06 16 52 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 428.44 15.07 6.46 6.46 Total: -1.00 -33.46 428.44 -10.08 -43.54 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.75 Total: 1.47 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -3.39 Total: -8.51 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.10 Total: -43.99 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.18 Total: -15.84 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 6.46 Total: 6.46 kcal Total: -33.46 -10.08 -43.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585692173.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.068 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds