Wall clock time and date at job start Sat Apr 11 2020 08:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99596 * 2 1 4 4 C 1.38212 * 119.99795 * 180.02562 * 3 2 1 5 5 C 1.38252 * 120.00357 * 359.97438 * 4 3 2 6 6 C 1.38217 * 119.99958 * 359.95055 * 5 4 3 7 7 C 1.50699 * 120.00192 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47078 * 120.00497 * 7 6 5 9 9 C 1.53006 * 109.46866 * 240.00320 * 7 6 5 10 10 C 1.52992 * 109.46956 * 0.02562 * 7 6 5 11 11 N 1.46510 * 109.46966 * 180.02562 * 10 7 6 12 12 C 1.34782 * 119.99766 * 179.97438 * 11 10 7 13 13 O 1.21586 * 119.99819 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99606 * 179.97438 * 12 11 10 15 15 C 1.47021 * 125.64630 * 359.69213 * 14 12 11 16 16 C 1.54338 * 107.26388 * 178.84767 * 15 14 12 17 17 C 1.55161 * 103.01875 * 338.14677 * 16 15 14 18 18 O 1.42906 * 111.00107 * 277.22427 * 17 16 15 19 19 C 1.50699 * 111.03570 * 153.39448 * 17 16 15 20 20 H 1.07996 * 120.00439 * 6.32958 * 19 17 16 21 21 C 1.37883 * 119.99934 * 186.32538 * 19 17 16 22 22 N 1.31513 * 120.00010 * 0.02562 * 21 19 17 23 23 Si 1.86794 * 119.99894 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47470 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47258 * 120.00641 * 23 21 19 26 26 H 1.48505 * 109.47282 * 240.00062 * 23 21 19 27 27 C 1.47424 * 125.64908 * 180.02562 * 14 12 11 28 28 C 1.38205 * 120.00218 * 180.20867 * 2 1 3 29 29 H 1.09000 * 109.46905 * 90.00210 * 1 2 3 30 30 H 1.09001 * 109.46765 * 210.00065 * 1 2 3 31 31 H 1.09000 * 109.47456 * 329.99922 * 1 2 3 32 32 H 1.07997 * 120.00278 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.00013 * 179.97438 * 4 3 2 34 34 H 1.07999 * 120.00298 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.47153 * 299.99793 * 8 7 6 36 36 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 37 37 H 1.09004 * 109.47261 * 59.99965 * 8 7 6 38 38 H 1.08993 * 109.46955 * 300.00219 * 9 7 6 39 39 H 1.09000 * 109.47050 * 60.00048 * 9 7 6 40 40 H 1.09001 * 109.47002 * 179.97438 * 9 7 6 41 41 H 1.08996 * 109.47747 * 299.99900 * 10 7 6 42 42 H 1.09002 * 109.47103 * 60.00312 * 10 7 6 43 43 H 0.96998 * 119.99923 * 0.02562 * 11 10 7 44 44 H 1.08997 * 109.89122 * 298.39191 * 15 14 12 45 45 H 1.09001 * 109.88101 * 59.56858 * 15 14 12 46 46 H 1.09000 * 110.85362 * 219.67563 * 16 15 14 47 47 H 1.09003 * 110.51531 * 96.45166 * 16 15 14 48 48 H 0.96703 * 113.99630 * 173.64984 * 18 17 16 49 49 H 0.96993 * 120.00386 * 179.97438 * 22 21 19 50 50 H 1.08998 * 110.36463 * 322.93444 * 27 14 12 51 51 H 1.09005 * 110.36535 * 85.14324 * 27 14 12 52 52 H 1.08001 * 120.00535 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 3.5807 -1.1968 0.0010 7 6 4.3343 -2.5019 0.0016 8 6 3.9656 -3.3031 1.2518 9 6 3.9638 -3.3052 -1.2468 10 6 5.8384 -2.2222 0.0009 11 7 6.5710 -3.4909 0.0008 12 6 7.9189 -3.4908 -0.0003 13 8 8.5267 -2.4378 -0.0008 14 7 8.5928 -4.6580 0.0002 15 6 7.9866 -5.9974 0.0083 16 6 9.1400 -7.0224 -0.0240 17 6 10.3195 -6.2029 -0.6111 18 8 10.2532 -6.1601 -2.0380 19 6 11.6439 -6.7555 -0.1511 20 1 11.6781 -7.6729 0.4175 21 6 12.8122 -6.0897 -0.4565 22 7 12.7705 -4.9723 -1.1486 23 14 14.4537 -6.7743 0.1143 24 1 14.2295 -8.0329 0.8699 25 1 15.3115 -7.0521 -1.0658 26 1 15.1256 -5.7825 0.9919 27 6 10.0599 -4.8031 -0.0004 28 6 2.1981 -1.1969 -0.0044 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6582 2.1327 -0.0004 33 1 4.1203 2.1328 -0.0010 34 1 5.3517 0.0003 -0.0014 35 1 4.2295 -2.7308 2.1411 36 1 4.5103 -4.2473 1.2519 37 1 2.8939 -3.5024 1.2527 38 1 2.8922 -3.5044 -1.2458 39 1 4.2265 -2.7344 -2.1374 40 1 4.5092 -4.2490 -1.2466 41 1 6.1015 -1.6512 -0.8895 42 1 6.1020 -1.6500 0.8904 43 1 6.0861 -4.3310 0.0009 44 1 7.3946 -6.1310 0.9137 45 1 7.3559 -6.1241 -0.8716 46 1 8.8939 -7.8631 -0.6726 47 1 9.3734 -7.3666 0.9836 48 1 10.9116 -5.5804 -2.4450 49 1 13.5923 -4.5037 -1.3631 50 1 10.5173 -4.0294 -0.6170 51 1 10.4463 -4.7536 1.0177 52 1 1.6582 -2.1322 -0.0082 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591937591.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:00:12 Heat of formation + Delta-G solvation = -64.499917 kcal Electronic energy + Delta-G solvation = -30869.295165 eV Core-core repulsion = 26833.077370 eV Total energy + Delta-G solvation = -4036.217795 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.41672 -39.45978 -37.66770 -36.66989 -34.19464 -33.27385 -32.70807 -32.20736 -30.24167 -29.76189 -27.95963 -27.55924 -27.47091 -26.12762 -24.74344 -23.14558 -22.25116 -21.70001 -19.65820 -19.59859 -19.05917 -17.55484 -17.04165 -16.85215 -15.86665 -15.44195 -15.25208 -15.10497 -14.81366 -14.60340 -14.45510 -14.08104 -14.01044 -13.96442 -13.50189 -13.36858 -13.16636 -12.97282 -12.78471 -12.66268 -12.53513 -12.10289 -12.04942 -12.00055 -11.94979 -11.64729 -11.54177 -11.41262 -11.19756 -11.03786 -10.83573 -10.79866 -10.65351 -10.57362 -10.44694 -10.16793 -9.58564 -9.34315 -8.97205 -8.79883 -8.74739 -8.67804 -8.32701 -7.65066 -6.25383 -4.35133 1.16401 1.20677 3.15453 3.22418 3.30231 3.33410 3.54955 3.79918 4.26856 4.33851 4.38794 4.57035 4.64368 4.78494 4.79675 4.89870 4.98565 5.01717 5.09263 5.25717 5.29173 5.39418 5.41673 5.42516 5.52143 5.56849 5.58403 5.65316 5.69702 5.77595 5.78343 5.84604 5.88388 5.93775 5.97720 6.02702 6.10238 6.14196 6.31567 6.38098 6.45154 6.52914 6.72377 6.80557 6.83720 6.91221 7.00270 7.26386 7.35588 7.68408 7.76824 8.06001 8.57588 8.69789 9.18095 9.32398 9.40525 10.81631 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.027060 B = 0.002091 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.486285 B =13389.417196 C =13945.795773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.127 4.127 4 C -0.112 4.112 5 C -0.125 4.125 6 C -0.060 4.060 7 C -0.037 4.037 8 C -0.138 4.138 9 C -0.138 4.138 10 C 0.150 3.850 11 N -0.749 5.749 12 C 0.716 3.284 13 O -0.597 6.597 14 N -0.629 5.629 15 C 0.106 3.894 16 C -0.116 4.116 17 C 0.248 3.752 18 O -0.583 6.583 19 C -0.537 4.537 20 H 0.067 0.933 21 C 0.071 3.929 22 N -0.891 5.891 23 Si 0.903 3.097 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.114 3.886 28 C -0.113 4.113 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.392 0.608 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.381 0.619 49 H 0.269 0.731 50 H 0.085 0.915 51 H 0.056 0.944 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.390 6.613 2.752 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.130 4.130 5 C -0.143 4.143 6 C -0.061 4.061 7 C -0.037 4.037 8 C -0.195 4.195 9 C -0.196 4.196 10 C 0.026 3.974 11 N -0.407 5.407 12 C 0.418 3.582 13 O -0.476 6.476 14 N -0.365 5.365 15 C -0.018 4.018 16 C -0.154 4.154 17 C 0.207 3.793 18 O -0.391 6.391 19 C -0.576 4.576 20 H 0.085 0.915 21 C -0.133 4.133 22 N -0.530 5.530 23 Si 0.730 3.270 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.008 4.008 28 C -0.131 4.131 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.227 0.773 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.231 0.769 49 H 0.079 0.921 50 H 0.103 0.897 51 H 0.074 0.926 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.341 7.188 2.782 24.581 hybrid contribution 1.173 -0.190 0.216 1.207 sum -22.168 6.998 2.998 23.439 Atomic orbital electron populations 1.20779 0.91341 1.02647 1.02240 1.19871 0.95916 0.93157 0.99893 1.21015 0.94313 0.97389 1.01779 1.21148 0.94225 0.98081 0.99557 1.21283 1.00672 0.91921 1.00416 1.19628 0.93454 0.93864 0.99113 1.19724 0.93850 0.93143 0.96986 1.21888 1.01419 0.99744 0.96460 1.21894 1.01392 0.99801 0.96490 1.21218 0.88422 0.85631 1.02158 1.45151 1.04933 1.08826 1.81833 1.15506 0.81014 0.83508 0.78183 1.90882 1.67785 1.29970 1.58995 1.47925 1.09281 1.03294 1.76040 1.21917 0.96908 0.83818 0.99164 1.22589 0.94533 0.97057 1.01187 1.19641 0.91709 0.88680 0.79245 1.86100 1.60836 1.71222 1.20971 1.21490 0.90426 1.09727 1.35910 0.91509 1.25088 0.99781 0.94365 0.94062 1.69729 1.28841 1.16013 1.38383 0.86361 0.82973 0.79077 0.78545 1.19606 1.20787 1.20794 1.23115 0.74865 1.01801 1.00976 1.20792 0.93344 0.97464 1.01513 0.91268 0.91631 0.91662 0.86373 0.86022 0.85258 0.92114 0.92063 0.92197 0.92192 0.92055 0.92008 0.91558 0.91596 0.77336 0.93241 0.92776 0.90810 0.90459 0.76925 0.92068 0.89685 0.92559 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.01 36.00 0.36 -0.33 16 2 C -0.09 -0.76 5.88 -104.63 -0.62 -1.37 16 3 C -0.13 -1.11 9.70 -39.58 -0.38 -1.49 16 4 C -0.11 -1.07 10.05 -39.59 -0.40 -1.47 16 5 C -0.13 -1.33 8.98 -39.58 -0.36 -1.69 16 6 C -0.06 -0.61 4.76 -104.62 -0.50 -1.10 16 7 C -0.04 -0.36 0.61 -155.66 -0.10 -0.46 16 8 C -0.14 -1.23 8.12 37.16 0.30 -0.93 16 9 C -0.14 -1.28 8.11 37.16 0.30 -0.98 16 10 C 0.15 1.98 3.22 -4.04 -0.01 1.97 16 11 N -0.75 -11.31 4.92 -65.22 -0.32 -11.63 16 12 C 0.72 14.70 8.49 -86.92 -0.74 13.96 16 13 O -0.60 -14.66 16.60 5.29 0.09 -14.57 16 14 N -0.63 -13.10 3.33 -176.22 -0.59 -13.69 16 15 C 0.11 1.83 6.15 -3.06 -0.02 1.81 16 16 C -0.12 -2.27 6.13 -24.89 -0.15 -2.42 16 17 C 0.25 5.98 0.87 -89.62 -0.08 5.90 16 18 O -0.58 -14.84 13.16 -35.23 -0.46 -15.31 16 19 C -0.54 -13.96 8.27 -34.44 -0.28 -14.24 16 20 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 21 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 22 N -0.89 -23.94 10.69 55.43 0.59 -23.35 16 23 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 27 C 0.11 2.78 5.38 -2.52 -0.01 2.77 16 28 C -0.11 -1.02 8.37 -39.58 -0.33 -1.35 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.13 1.42 5.89 -52.49 -0.31 1.11 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.54 6.86 -51.93 -0.36 0.18 16 37 H 0.06 0.45 7.41 -51.93 -0.38 0.06 16 38 H 0.06 0.46 7.37 -51.93 -0.38 0.08 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.57 6.86 -51.93 -0.36 0.21 16 41 H 0.07 0.95 7.51 -51.93 -0.39 0.56 16 42 H 0.07 0.93 7.51 -51.93 -0.39 0.54 16 43 H 0.39 4.99 5.15 -40.82 -0.21 4.78 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 47 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 48 H 0.38 10.01 7.57 45.56 0.34 10.35 16 49 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 50 H 0.08 2.35 7.33 -51.93 -0.38 1.97 16 51 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 52 H 0.12 0.91 7.10 -52.49 -0.37 0.53 16 LS Contribution 407.81 15.07 6.15 6.15 Total: -1.00 -30.75 407.81 -10.46 -41.21 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -7.79 Total: 15.45 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -3.11 Total: 0.34 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.31 Total: -48.67 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.38 Total: -29.87 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.75 -10.46 -41.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591937591.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.287 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds