Wall clock time and date at job start Sat Apr 11 2020 08:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99596 * 2 1 4 4 C 1.38212 * 119.99795 * 180.02562 * 3 2 1 5 5 C 1.38252 * 120.00357 * 359.97438 * 4 3 2 6 6 C 1.38217 * 119.99958 * 359.95055 * 5 4 3 7 7 C 1.50699 * 120.00192 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47078 * 120.00497 * 7 6 5 9 9 C 1.53006 * 109.46866 * 240.00320 * 7 6 5 10 10 C 1.52992 * 109.46956 * 0.02562 * 7 6 5 11 11 N 1.46510 * 109.46966 * 180.02562 * 10 7 6 12 12 C 1.34782 * 119.99766 * 179.97438 * 11 10 7 13 13 O 1.21586 * 119.99819 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99606 * 179.97438 * 12 11 10 15 15 C 1.47021 * 125.64630 * 359.69213 * 14 12 11 16 16 C 1.54338 * 107.26388 * 178.84767 * 15 14 12 17 17 C 1.55161 * 103.01875 * 338.14677 * 16 15 14 18 18 O 1.42906 * 111.00107 * 277.22427 * 17 16 15 19 19 C 1.50699 * 111.03570 * 153.39448 * 17 16 15 20 20 H 1.07996 * 120.00439 * 6.32958 * 19 17 16 21 21 C 1.37883 * 119.99934 * 186.32538 * 19 17 16 22 22 N 1.31513 * 120.00010 * 0.02562 * 21 19 17 23 23 Si 1.86794 * 119.99894 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47470 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47258 * 120.00641 * 23 21 19 26 26 H 1.48505 * 109.47282 * 240.00062 * 23 21 19 27 27 C 1.47424 * 125.64908 * 180.02562 * 14 12 11 28 28 C 1.38205 * 120.00218 * 180.20867 * 2 1 3 29 29 H 1.09000 * 109.46905 * 90.00210 * 1 2 3 30 30 H 1.09001 * 109.46765 * 210.00065 * 1 2 3 31 31 H 1.09000 * 109.47456 * 329.99922 * 1 2 3 32 32 H 1.07997 * 120.00278 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.00013 * 179.97438 * 4 3 2 34 34 H 1.07999 * 120.00298 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.47153 * 299.99793 * 8 7 6 36 36 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 37 37 H 1.09004 * 109.47261 * 59.99965 * 8 7 6 38 38 H 1.08993 * 109.46955 * 300.00219 * 9 7 6 39 39 H 1.09000 * 109.47050 * 60.00048 * 9 7 6 40 40 H 1.09001 * 109.47002 * 179.97438 * 9 7 6 41 41 H 1.08996 * 109.47747 * 299.99900 * 10 7 6 42 42 H 1.09002 * 109.47103 * 60.00312 * 10 7 6 43 43 H 0.96998 * 119.99923 * 0.02562 * 11 10 7 44 44 H 1.08997 * 109.89122 * 298.39191 * 15 14 12 45 45 H 1.09001 * 109.88101 * 59.56858 * 15 14 12 46 46 H 1.09000 * 110.85362 * 219.67563 * 16 15 14 47 47 H 1.09003 * 110.51531 * 96.45166 * 16 15 14 48 48 H 0.96703 * 113.99630 * 173.64984 * 18 17 16 49 49 H 0.96993 * 120.00386 * 179.97438 * 22 21 19 50 50 H 1.08998 * 110.36463 * 322.93444 * 27 14 12 51 51 H 1.09005 * 110.36535 * 85.14324 * 27 14 12 52 52 H 1.08001 * 120.00535 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 3.5807 -1.1968 0.0010 7 6 4.3343 -2.5019 0.0016 8 6 3.9656 -3.3031 1.2518 9 6 3.9638 -3.3052 -1.2468 10 6 5.8384 -2.2222 0.0009 11 7 6.5710 -3.4909 0.0008 12 6 7.9189 -3.4908 -0.0003 13 8 8.5267 -2.4378 -0.0008 14 7 8.5928 -4.6580 0.0002 15 6 7.9866 -5.9974 0.0083 16 6 9.1400 -7.0224 -0.0240 17 6 10.3195 -6.2029 -0.6111 18 8 10.2532 -6.1601 -2.0380 19 6 11.6439 -6.7555 -0.1511 20 1 11.6781 -7.6729 0.4175 21 6 12.8122 -6.0897 -0.4565 22 7 12.7705 -4.9723 -1.1486 23 14 14.4537 -6.7743 0.1143 24 1 14.2295 -8.0329 0.8699 25 1 15.3115 -7.0521 -1.0658 26 1 15.1256 -5.7825 0.9919 27 6 10.0599 -4.8031 -0.0004 28 6 2.1981 -1.1969 -0.0044 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6582 2.1327 -0.0004 33 1 4.1203 2.1328 -0.0010 34 1 5.3517 0.0003 -0.0014 35 1 4.2295 -2.7308 2.1411 36 1 4.5103 -4.2473 1.2519 37 1 2.8939 -3.5024 1.2527 38 1 2.8922 -3.5044 -1.2458 39 1 4.2265 -2.7344 -2.1374 40 1 4.5092 -4.2490 -1.2466 41 1 6.1015 -1.6512 -0.8895 42 1 6.1020 -1.6500 0.8904 43 1 6.0861 -4.3310 0.0009 44 1 7.3946 -6.1310 0.9137 45 1 7.3559 -6.1241 -0.8716 46 1 8.8939 -7.8631 -0.6726 47 1 9.3734 -7.3666 0.9836 48 1 10.9116 -5.5804 -2.4450 49 1 13.5923 -4.5037 -1.3631 50 1 10.5173 -4.0294 -0.6170 51 1 10.4463 -4.7536 1.0177 52 1 1.6582 -2.1322 -0.0082 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591937591.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:00:11 Heat of formation + Delta-G solvation = -83.375036 kcal Electronic energy + Delta-G solvation = -30870.113652 eV Core-core repulsion = 26833.077370 eV Total energy + Delta-G solvation = -4037.036282 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.51734 -40.73152 -39.18209 -37.83708 -36.03072 -34.53089 -34.22538 -33.39311 -31.77585 -30.65371 -29.57095 -28.54193 -28.18368 -27.31620 -26.29870 -24.38489 -23.45333 -22.38849 -21.47432 -21.06843 -20.03134 -19.18075 -18.77424 -17.74848 -17.20638 -16.95271 -16.78229 -16.34349 -16.15917 -15.74993 -15.68692 -15.30497 -14.93258 -14.81695 -14.71513 -14.59167 -14.45500 -14.34123 -13.83365 -13.70885 -13.60512 -13.49367 -13.24409 -13.03825 -12.86568 -12.81708 -12.72565 -12.67249 -12.51342 -12.33064 -12.25014 -12.19391 -12.07840 -12.01269 -11.58282 -11.44996 -11.33349 -11.18288 -10.66835 -10.32325 -10.20392 -9.65524 -9.47809 -9.31650 -8.23870 -6.41111 0.45133 0.50502 1.40756 1.44170 1.55080 1.67828 2.15776 2.38619 2.84510 3.02147 3.08523 3.53486 3.64483 3.80879 3.93058 4.04443 4.08549 4.11705 4.16009 4.19792 4.28291 4.35066 4.52669 4.57026 4.61540 4.62814 4.65730 4.76309 4.77844 4.79920 4.88197 4.93299 4.93942 4.99042 5.06248 5.08311 5.11334 5.20502 5.25999 5.31146 5.33866 5.36396 5.38301 5.46003 5.48100 5.62959 5.71199 5.72702 5.76944 6.05912 6.14516 6.19192 6.66844 7.06986 7.28144 7.35593 7.57599 8.81414 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.027060 B = 0.002091 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.486285 B =13389.417196 C =13945.795773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.133 4.133 4 C -0.123 4.123 5 C -0.150 4.150 6 C -0.069 4.069 7 C -0.025 4.025 8 C -0.136 4.136 9 C -0.137 4.137 10 C 0.152 3.848 11 N -0.724 5.724 12 C 0.709 3.291 13 O -0.647 6.647 14 N -0.634 5.634 15 C 0.106 3.894 16 C -0.110 4.110 17 C 0.231 3.769 18 O -0.587 6.587 19 C -0.554 4.554 20 H 0.070 0.930 21 C 0.024 3.976 22 N -0.916 5.916 23 Si 0.964 3.036 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.284 1.284 27 C 0.129 3.871 28 C -0.116 4.116 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.408 0.592 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.372 0.628 49 H 0.268 0.732 50 H 0.041 0.959 51 H 0.038 0.962 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.470 4.984 3.501 27.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.141 4.141 5 C -0.168 4.168 6 C -0.069 4.069 7 C -0.025 4.025 8 C -0.193 4.193 9 C -0.195 4.195 10 C 0.028 3.972 11 N -0.382 5.382 12 C 0.411 3.589 13 O -0.529 6.529 14 N -0.370 5.370 15 C -0.016 4.016 16 C -0.148 4.148 17 C 0.191 3.809 18 O -0.394 6.394 19 C -0.592 4.592 20 H 0.088 0.912 21 C -0.177 4.177 22 N -0.555 5.555 23 Si 0.790 3.210 24 H -0.186 1.186 25 H -0.207 1.207 26 H -0.210 1.210 27 C 0.005 3.995 28 C -0.134 4.134 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.155 0.845 33 H 0.148 0.852 34 H 0.131 0.869 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.246 0.754 44 H 0.109 0.891 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.220 0.780 49 H 0.077 0.923 50 H 0.060 0.940 51 H 0.056 0.944 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -26.493 5.512 3.538 27.291 hybrid contribution 2.091 0.386 -0.028 2.127 sum -24.402 5.898 3.510 25.349 Atomic orbital electron populations 1.20827 0.89303 1.03670 1.03043 1.20249 0.97465 0.92842 0.98620 1.21303 0.93966 0.98599 1.01260 1.21334 0.95030 0.98073 0.99637 1.21301 1.00128 0.93102 1.02246 1.19677 0.94186 0.93390 0.99669 1.19630 0.90877 0.93717 0.98283 1.21898 1.02950 0.99376 0.95125 1.21905 1.02939 0.99345 0.95272 1.21296 0.90758 0.84411 1.00742 1.44927 1.02906 1.10388 1.79982 1.15747 0.82460 0.82664 0.78026 1.90845 1.69235 1.31781 1.61071 1.47860 1.08058 1.04924 1.76163 1.22135 0.96383 0.80921 1.02129 1.22595 0.93150 0.97389 1.01634 1.19882 0.93255 0.89257 0.78500 1.86091 1.60457 1.70927 1.21952 1.21834 0.91574 1.09856 1.35935 0.91168 1.25859 1.03053 0.94587 0.94216 1.69858 1.29389 1.16991 1.39281 0.85407 0.79020 0.78584 0.78004 1.18585 1.20654 1.20995 1.22643 0.77085 1.00860 0.98867 1.21006 0.92694 0.98616 1.01081 0.90448 0.90581 0.90755 0.84474 0.85208 0.86939 0.93070 0.91563 0.89978 0.89895 0.93372 0.91730 0.93336 0.92877 0.75426 0.89123 0.90839 0.89505 0.89255 0.77953 0.92259 0.94001 0.94388 0.84189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 71.24 0.71 -0.30 16 2 C -0.09 -1.37 5.88 -19.87 -0.12 -1.48 16 3 C -0.13 -2.15 9.70 22.27 0.22 -1.93 16 4 C -0.12 -2.35 10.05 22.27 0.22 -2.12 16 5 C -0.15 -3.30 8.98 22.27 0.20 -3.10 16 6 C -0.07 -1.33 4.76 -19.86 -0.09 -1.42 16 7 C -0.02 -0.46 0.61 -52.93 -0.03 -0.49 16 8 C -0.14 -2.08 8.12 71.98 0.58 -1.50 16 9 C -0.14 -2.24 8.11 71.98 0.58 -1.65 16 10 C 0.15 4.08 3.22 86.37 0.28 4.36 16 11 N -0.72 -21.39 4.92 -478.52 -2.35 -23.74 16 12 C 0.71 29.57 8.49 179.05 1.52 31.09 16 13 O -0.65 -33.31 16.60 -3.99 -0.07 -33.37 16 14 N -0.63 -26.35 3.33 -829.71 -2.76 -29.11 16 15 C 0.11 3.39 6.15 86.73 0.53 3.93 16 16 C -0.11 -4.08 6.13 31.79 0.19 -3.88 16 17 C 0.23 11.23 0.87 -10.14 -0.01 11.22 16 18 O -0.59 -30.32 13.16 -148.98 -1.96 -32.28 16 19 C -0.55 -28.89 8.27 25.60 0.21 -28.68 16 20 H 0.07 3.53 7.79 -2.91 -0.02 3.51 16 21 C 0.02 1.25 5.29 84.66 0.45 1.70 16 22 N -0.92 -50.91 10.69 21.45 0.23 -50.68 16 23 Si 0.96 42.19 29.54 68.60 2.03 44.22 16 24 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 C 0.13 6.50 5.38 86.86 0.47 6.97 16 28 C -0.12 -1.83 8.37 22.27 0.19 -1.64 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.54 8.09 -2.39 -0.02 0.53 16 31 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 32 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.11 2.75 5.89 -2.91 -0.02 2.74 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.94 6.86 -2.39 -0.02 0.92 16 37 H 0.08 0.92 7.41 -2.38 -0.02 0.90 16 38 H 0.08 0.99 7.37 -2.39 -0.02 0.97 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 1.01 6.86 -2.39 -0.02 0.99 16 41 H 0.05 1.48 7.51 -2.39 -0.02 1.47 16 42 H 0.05 1.57 7.51 -2.39 -0.02 1.55 16 43 H 0.41 9.40 5.15 -92.71 -0.48 8.92 16 44 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 46 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 47 H 0.09 3.08 8.03 -2.39 -0.02 3.06 16 48 H 0.37 20.34 7.57 -74.06 -0.56 19.78 16 49 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 50 H 0.04 2.44 7.33 -2.39 -0.02 2.42 16 51 H 0.04 2.00 8.03 -2.38 -0.02 1.98 16 52 H 0.14 1.58 7.10 -2.91 -0.02 1.56 16 Total: -1.00 -69.79 407.81 1.11 -68.68 By element: Atomic # 1 Polarization: 45.33 SS G_CDS: -0.11 Total: 45.22 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 6.11 Total: 11.06 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -4.88 Total: -103.53 kcal Atomic # 8 Polarization: -63.62 SS G_CDS: -2.03 Total: -65.65 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -69.79 1.11 -68.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591937591.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.696 kcal (2) G-P(sol) polarization free energy of solvation -69.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds