Wall clock time and date at job start Sat Apr 11 2020 08:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38265 * 120.00041 * 2 1 4 4 C 1.38212 * 119.99752 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00246 * 359.75046 * 4 3 2 6 6 C 1.38215 * 119.99531 * 0.50315 * 5 4 3 7 7 C 1.50703 * 119.99549 * 179.76856 * 6 5 4 8 8 C 1.53000 * 109.46904 * 239.72728 * 7 6 5 9 9 C 1.53003 * 109.47259 * 119.72677 * 7 6 5 10 10 C 1.52998 * 109.47293 * 359.72252 * 7 6 5 11 11 N 1.46496 * 109.47185 * 179.97438 * 10 7 6 12 12 C 1.34778 * 119.99967 * 180.02562 * 11 10 7 13 13 O 1.21585 * 119.99945 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00134 * 180.02562 * 12 11 10 15 15 C 1.47031 * 125.64691 * 0.02562 * 14 12 11 16 16 C 1.54327 * 107.26879 * 181.01415 * 15 14 12 17 17 C 1.55156 * 102.94181 * 22.19441 * 16 15 14 18 18 O 1.42897 * 111.00579 * 82.57426 * 17 16 15 19 19 C 1.50708 * 110.99876 * 206.38340 * 17 16 15 20 20 H 1.07995 * 120.00149 * 0.02562 * 19 17 16 21 21 C 1.37875 * 119.99534 * 180.02562 * 19 17 16 22 22 N 1.31519 * 120.00164 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 119.99936 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46915 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47731 * 119.99828 * 23 21 19 26 26 H 1.48502 * 109.47017 * 239.99936 * 23 21 19 27 27 C 1.47422 * 125.65171 * 179.97438 * 14 12 11 28 28 C 1.38216 * 120.00206 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47378 * 270.02510 * 1 2 3 30 30 H 1.09003 * 109.46737 * 30.02594 * 1 2 3 31 31 H 1.08998 * 109.46818 * 150.01847 * 1 2 3 32 32 H 1.07997 * 119.99787 * 359.97438 * 3 2 1 33 33 H 1.08006 * 119.99724 * 180.02562 * 4 3 2 34 34 H 1.08001 * 119.99783 * 180.26903 * 5 4 3 35 35 H 1.09005 * 109.47108 * 180.02562 * 8 7 6 36 36 H 1.09005 * 109.47007 * 299.99863 * 8 7 6 37 37 H 1.08993 * 109.47394 * 59.99622 * 8 7 6 38 38 H 1.08999 * 109.46531 * 300.00131 * 9 7 6 39 39 H 1.08997 * 109.47030 * 59.99517 * 9 7 6 40 40 H 1.08992 * 109.47122 * 180.02562 * 9 7 6 41 41 H 1.09006 * 109.47079 * 60.00301 * 10 7 6 42 42 H 1.08998 * 109.47325 * 300.00658 * 10 7 6 43 43 H 0.97000 * 120.00179 * 0.02562 * 11 10 7 44 44 H 1.08998 * 109.88059 * 61.59780 * 15 14 12 45 45 H 1.08994 * 109.87878 * 300.43060 * 15 14 12 46 46 H 1.09001 * 110.71763 * 140.55775 * 16 15 14 47 47 H 1.08997 * 110.72099 * 263.64813 * 16 15 14 48 48 H 0.96698 * 114.00190 * 179.97438 * 18 17 16 49 49 H 0.97003 * 119.99594 * 180.02562 * 22 21 19 50 50 H 1.09000 * 110.36378 * 37.07938 * 27 14 12 51 51 H 1.09001 * 110.46274 * 274.80114 * 27 14 12 52 52 H 1.07995 * 119.99282 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0063 6 6 3.5806 -1.1969 0.0010 7 6 4.3341 -2.5021 0.0020 8 6 3.9649 -3.3050 -1.2470 9 6 3.9641 -3.3037 1.2515 10 6 5.8383 -2.2225 0.0023 11 7 6.5708 -3.4912 0.0039 12 6 7.9186 -3.4912 0.0049 13 8 8.5265 -2.4382 0.0040 14 7 8.5925 -4.6584 0.0058 15 6 7.9862 -5.9979 0.0053 16 6 9.1397 -7.0228 0.0329 17 6 10.3194 -6.2026 0.6185 18 8 10.2537 -6.1579 2.0452 19 6 11.6433 -6.7569 0.1587 20 1 11.6712 -7.6169 -0.4940 21 6 12.8186 -6.1661 0.5714 22 7 12.7845 -5.1185 1.3659 23 14 14.4596 -6.8526 0.0010 24 1 14.2263 -8.0247 -0.8805 25 1 15.1994 -5.8071 -0.7505 26 1 15.2577 -7.2722 1.1809 27 6 10.0595 -4.8035 0.0065 28 6 2.1981 -1.1970 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6583 2.1327 -0.0004 33 1 4.1205 2.1327 0.0010 34 1 5.3517 0.0000 0.0111 35 1 4.5096 -4.2492 -1.2461 36 1 2.8932 -3.5042 -1.2472 37 1 4.2285 -2.7339 -2.1371 38 1 4.2271 -2.7316 2.1412 39 1 2.8924 -3.5028 1.2513 40 1 4.5094 -4.2474 1.2525 41 1 6.1014 -1.6504 0.8921 42 1 6.1019 -1.6514 -0.8879 43 1 6.0858 -4.3313 0.0042 44 1 7.3902 -6.1346 -0.8970 45 1 7.3594 -6.1213 0.8884 46 1 8.8938 -7.8627 0.6827 47 1 9.3705 -7.3708 -0.9739 48 1 10.9709 -5.6563 2.4565 49 1 13.6115 -4.7027 1.6559 50 1 10.5170 -4.0292 0.6223 51 1 10.4476 -4.7566 -1.0111 52 1 1.6580 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591937594.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:00:15 Heat of formation + Delta-G solvation = -64.704362 kcal Electronic energy + Delta-G solvation = -30851.964420 eV Core-core repulsion = 26815.737760 eV Total energy + Delta-G solvation = -4036.226661 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.41787 -39.46027 -37.66238 -36.67049 -34.22041 -33.28207 -32.70900 -32.12932 -30.24724 -29.76222 -27.98524 -27.58114 -27.47093 -26.12907 -24.74944 -23.14452 -22.24806 -21.70066 -19.64132 -19.59933 -19.05865 -17.56865 -17.09275 -16.86050 -15.86178 -15.43949 -15.24816 -15.08888 -14.84347 -14.60255 -14.43120 -14.07756 -14.00106 -13.96832 -13.50243 -13.35335 -13.16903 -12.95936 -12.81737 -12.65104 -12.53598 -12.11604 -12.04888 -12.00522 -11.94869 -11.61687 -11.53911 -11.43975 -11.20089 -11.05190 -10.83561 -10.77662 -10.65075 -10.57158 -10.46024 -10.15894 -9.60118 -9.37809 -8.97281 -8.80052 -8.74973 -8.67122 -8.34312 -7.64422 -6.27777 -4.37267 1.16371 1.20632 3.14874 3.21619 3.29336 3.32527 3.54922 3.79507 4.25638 4.33566 4.38729 4.56801 4.64330 4.78472 4.79634 4.89855 4.98523 4.99380 5.09244 5.25626 5.29211 5.39372 5.41711 5.42802 5.52137 5.56821 5.58484 5.65386 5.70145 5.77637 5.80190 5.84871 5.88393 5.93725 5.97741 6.04514 6.10276 6.14218 6.31526 6.38056 6.45118 6.52657 6.72560 6.80402 6.83633 6.89406 6.99493 7.25795 7.34896 7.66635 7.76236 8.02315 8.56943 8.67588 9.17580 9.32639 9.48494 10.79453 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.027394 B = 0.002078 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.882225 B =13471.213367 C =14007.421418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.127 4.127 4 C -0.112 4.112 5 C -0.125 4.125 6 C -0.060 4.060 7 C -0.037 4.037 8 C -0.138 4.138 9 C -0.139 4.139 10 C 0.150 3.850 11 N -0.749 5.749 12 C 0.716 3.284 13 O -0.598 6.598 14 N -0.627 5.627 15 C 0.106 3.894 16 C -0.116 4.116 17 C 0.249 3.751 18 O -0.585 6.585 19 C -0.537 4.537 20 H 0.068 0.932 21 C 0.070 3.930 22 N -0.894 5.894 23 Si 0.904 3.096 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.112 3.888 28 C -0.113 4.113 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.392 0.608 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.386 0.614 49 H 0.271 0.729 50 H 0.080 0.920 51 H 0.056 0.944 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.279 6.681 -3.100 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.130 4.130 5 C -0.143 4.143 6 C -0.061 4.061 7 C -0.037 4.037 8 C -0.195 4.195 9 C -0.196 4.196 10 C 0.026 3.974 11 N -0.407 5.407 12 C 0.418 3.582 13 O -0.477 6.477 14 N -0.364 5.364 15 C -0.018 4.018 16 C -0.154 4.154 17 C 0.208 3.792 18 O -0.395 6.395 19 C -0.575 4.575 20 H 0.086 0.914 21 C -0.133 4.133 22 N -0.533 5.533 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.010 4.010 28 C -0.131 4.131 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.227 0.773 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.238 0.762 49 H 0.081 0.919 50 H 0.099 0.901 51 H 0.075 0.925 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.266 7.302 -3.112 24.583 hybrid contribution 1.201 -0.237 -0.194 1.239 sum -22.066 7.064 -3.306 23.404 Atomic orbital electron populations 1.20778 0.91339 1.02647 1.02242 1.19876 0.95916 0.93157 0.99890 1.21016 0.94312 0.97389 1.01780 1.21150 0.94225 0.98079 0.99558 1.21284 1.00670 0.91921 1.00418 1.19622 0.93455 0.93863 0.99113 1.19726 0.93844 0.93145 0.96989 1.21888 1.01423 0.99732 0.96470 1.21893 1.01394 0.99816 0.96477 1.21218 0.88429 0.85626 1.02158 1.45143 1.04922 1.08836 1.81816 1.15506 0.81025 0.83500 0.78168 1.90879 1.67789 1.29992 1.59034 1.47881 1.09173 1.03326 1.76017 1.21914 0.96903 0.83772 0.99165 1.22595 0.94608 0.97063 1.01165 1.19602 0.91688 0.88400 0.79516 1.86053 1.54909 1.78047 1.20477 1.21535 0.90109 1.15007 1.30867 0.91429 1.25093 0.99864 0.94166 0.94192 1.69584 1.28677 1.20938 1.34107 0.86338 0.82849 0.79028 0.78609 1.19583 1.20760 1.20761 1.23132 0.75145 1.01935 1.00772 1.20789 0.93345 0.97463 1.01513 0.91265 0.91664 0.91630 0.86373 0.86022 0.85259 0.92062 0.92192 0.92115 0.92053 0.92193 0.92003 0.91553 0.91598 0.77323 0.93267 0.92738 0.90803 0.90509 0.76172 0.91929 0.90149 0.92538 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.01 36.00 0.36 -0.33 16 2 C -0.09 -0.76 5.88 -104.62 -0.62 -1.37 16 3 C -0.13 -1.11 9.70 -39.58 -0.38 -1.49 16 4 C -0.11 -1.07 10.05 -39.58 -0.40 -1.47 16 5 C -0.13 -1.33 8.98 -39.58 -0.36 -1.69 16 6 C -0.06 -0.61 4.76 -104.63 -0.50 -1.10 16 7 C -0.04 -0.36 0.61 -155.66 -0.10 -0.46 16 8 C -0.14 -1.23 8.11 37.16 0.30 -0.92 16 9 C -0.14 -1.28 8.11 37.16 0.30 -0.98 16 10 C 0.15 1.98 3.22 -4.04 -0.01 1.97 16 11 N -0.75 -11.32 4.92 -65.23 -0.32 -11.64 16 12 C 0.72 14.71 8.49 -86.92 -0.74 13.98 16 13 O -0.60 -14.66 16.60 5.29 0.09 -14.57 16 14 N -0.63 -13.09 3.33 -176.24 -0.59 -13.68 16 15 C 0.11 1.84 6.15 -3.06 -0.02 1.82 16 16 C -0.12 -2.28 6.12 -24.90 -0.15 -2.44 16 17 C 0.25 6.03 0.89 -89.62 -0.08 5.95 16 18 O -0.58 -15.10 13.18 -35.23 -0.46 -15.56 16 19 C -0.54 -13.92 8.25 -34.44 -0.28 -14.20 16 20 H 0.07 1.71 7.76 -52.49 -0.41 1.30 16 21 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 22 N -0.89 -23.96 10.72 55.43 0.59 -23.37 16 23 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 C 0.11 2.73 5.63 -2.53 -0.01 2.72 16 28 C -0.11 -1.02 8.37 -39.59 -0.33 -1.35 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.13 1.42 5.90 -52.49 -0.31 1.11 16 35 H 0.06 0.54 6.86 -51.93 -0.36 0.18 16 36 H 0.06 0.45 7.39 -51.93 -0.38 0.06 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.47 7.39 -51.93 -0.38 0.08 16 40 H 0.06 0.57 6.86 -51.93 -0.36 0.22 16 41 H 0.07 0.96 7.50 -51.93 -0.39 0.57 16 42 H 0.07 0.92 7.53 -51.93 -0.39 0.53 16 43 H 0.39 5.00 5.15 -40.82 -0.21 4.79 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.08 1.41 8.02 -51.93 -0.42 1.00 16 48 H 0.39 10.38 6.93 45.56 0.32 10.69 16 49 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 50 H 0.08 2.22 7.64 -51.93 -0.40 1.82 16 51 H 0.06 1.41 8.03 -51.93 -0.42 0.99 16 52 H 0.12 0.91 7.10 -52.49 -0.37 0.53 16 LS Contribution 407.74 15.07 6.14 6.14 Total: -1.00 -30.72 407.74 -10.51 -41.23 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -7.83 Total: 15.77 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -3.11 Total: 0.35 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.31 Total: -48.69 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.38 Total: -30.13 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.72 -10.51 -41.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591937594.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.478 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds