Wall clock time and date at job start Sat Apr 11 2020 08:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 120.00087 * 2 1 4 4 C 1.38214 * 120.00172 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99736 * 0.02760 * 4 3 2 6 6 C 1.38210 * 120.00307 * 359.69901 * 5 4 3 7 7 C 1.38213 * 120.00159 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99884 * 359.97438 * 7 2 1 9 9 C 1.53000 * 109.47174 * 66.44446 * 8 7 2 10 10 C 1.53002 * 109.47020 * 306.44660 * 8 7 2 11 11 C 1.52995 * 109.46996 * 186.44866 * 8 7 2 12 12 N 1.46507 * 109.47105 * 179.97438 * 11 8 7 13 13 C 1.34773 * 120.00088 * 179.97438 * 12 11 8 14 14 O 1.21587 * 120.00002 * 0.02562 * 13 12 11 15 15 N 1.34772 * 119.99925 * 180.02562 * 13 12 11 16 16 C 1.47424 * 125.64983 * 0.02562 * 15 13 12 17 17 C 1.54908 * 104.83084 * 155.83946 * 16 15 13 18 18 C 1.55150 * 101.58639 * 37.00749 * 17 16 15 19 19 O 1.42902 * 110.71850 * 83.03839 * 18 17 16 20 20 C 1.50697 * 110.72237 * 206.13357 * 18 17 16 21 21 H 1.08002 * 120.00121 * 357.55941 * 20 18 17 22 22 C 1.37881 * 120.00087 * 177.28329 * 20 18 17 23 23 N 1.31514 * 119.99866 * 0.27706 * 22 20 18 24 24 Si 1.86791 * 120.00124 * 180.27521 * 22 20 18 25 25 H 1.48505 * 109.47319 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47208 * 119.99926 * 24 22 20 27 27 H 1.48500 * 109.47342 * 240.00089 * 24 22 20 28 28 C 1.47322 * 125.61346 * 180.16719 * 15 13 12 29 29 H 1.08993 * 109.47227 * 276.09160 * 1 2 3 30 30 H 1.09000 * 109.47068 * 36.09234 * 1 2 3 31 31 H 1.09005 * 109.46981 * 156.08970 * 1 2 3 32 32 H 1.08009 * 119.99708 * 0.02562 * 3 2 1 33 33 H 1.08005 * 120.00035 * 179.97438 * 4 3 2 34 34 H 1.08005 * 119.99579 * 179.97438 * 5 4 3 35 35 H 1.07993 * 120.00325 * 180.30219 * 6 5 4 36 36 H 1.09000 * 109.47231 * 196.77636 * 9 8 7 37 37 H 1.09002 * 109.47292 * 316.78088 * 9 8 7 38 38 H 1.09006 * 109.46848 * 76.77459 * 9 8 7 39 39 H 1.09001 * 109.47370 * 299.99875 * 10 8 7 40 40 H 1.09001 * 109.47403 * 60.00400 * 10 8 7 41 41 H 1.09002 * 109.46721 * 179.97438 * 10 8 7 42 42 H 1.09001 * 109.47330 * 60.00163 * 11 8 7 43 43 H 1.09000 * 109.47293 * 299.99647 * 11 8 7 44 44 H 0.96997 * 119.99745 * 0.02562 * 12 11 8 45 45 H 1.08997 * 110.36778 * 36.99803 * 16 15 13 46 46 H 1.09003 * 110.36502 * 274.67600 * 16 15 13 47 47 H 1.09000 * 111.00367 * 278.93145 * 17 16 15 48 48 H 1.09001 * 111.00333 * 155.08604 * 17 16 15 49 49 H 0.96701 * 114.00265 * 182.44158 * 19 18 17 50 50 H 0.97000 * 120.00615 * 179.97438 * 23 22 20 51 51 H 1.08999 * 110.06574 * 61.75279 * 28 15 13 52 52 H 1.09008 * 109.85068 * 300.48385 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1970 0.0062 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5021 0.0017 9 6 0.6899 -2.6564 -1.3202 10 6 0.4479 -2.5145 1.1625 11 6 2.4310 -3.6602 0.1641 12 7 1.6985 -4.9290 0.1659 13 6 2.3660 -6.0924 0.2971 14 8 3.5762 -6.0890 0.4144 15 7 1.6922 -7.2596 0.2981 16 6 0.2316 -7.4086 0.1642 17 6 0.0284 -8.8406 -0.3905 18 6 1.1440 -9.6233 0.3512 19 8 0.7100 -10.0059 1.6578 20 6 1.5658 -10.8321 -0.4437 21 1 1.0699 -11.0667 -1.3740 22 6 2.5888 -11.6354 0.0139 23 7 3.1927 -11.3498 1.1468 24 14 3.1169 -13.1294 -0.9752 25 1 2.2864 -13.2296 -2.2022 26 1 4.5459 -12.9916 -1.3552 27 1 2.9387 -14.3544 -0.1549 28 6 2.2936 -8.5973 0.4364 29 1 -0.3633 0.1090 1.0218 30 1 -0.3633 0.8304 -0.6054 31 1 -0.3633 -0.9395 -0.4165 32 1 1.6582 2.1327 0.0004 33 1 4.1205 2.1327 0.0001 34 1 5.3517 0.0000 0.0005 35 1 4.1206 -2.1322 0.0111 36 1 -0.0750 -3.4257 -1.2142 37 1 0.2186 -1.7091 -1.5823 38 1 1.3884 -2.9443 -2.1059 39 1 0.9856 -2.4045 2.1043 40 1 -0.2549 -1.6893 1.0468 41 1 -0.0974 -3.4583 1.1630 42 1 2.9687 -3.5503 1.1059 43 1 3.1411 -3.6514 -0.6628 44 1 0.7331 -4.9317 0.0718 45 1 -0.1624 -6.6713 -0.5353 46 1 -0.2509 -7.3062 1.1363 47 1 0.1832 -8.8674 -1.4691 48 1 -0.9579 -9.2244 -0.1293 49 1 1.3838 -10.4656 2.1772 50 1 3.9121 -11.9151 1.4690 51 1 2.7967 -8.6834 1.3995 52 1 3.0043 -8.7690 -0.3722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591942098.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:00:21 Heat of formation + Delta-G solvation = -46.100277 kcal Electronic energy + Delta-G solvation = -31205.215937 eV Core-core repulsion = 27169.796010 eV Total energy + Delta-G solvation = -4035.419927 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.70710 -39.49818 -37.60627 -36.62019 -34.24292 -33.77837 -32.46072 -32.18284 -30.17388 -29.81760 -27.96970 -27.69764 -27.43546 -26.15272 -24.61862 -23.04029 -22.57423 -21.39938 -19.69598 -19.62858 -19.34658 -17.61420 -17.08574 -16.51954 -16.00742 -15.55039 -15.39711 -15.17116 -14.96156 -14.57633 -14.37319 -14.25278 -14.08134 -13.90674 -13.65570 -13.30682 -13.17557 -12.90843 -12.83140 -12.41520 -12.39327 -12.29041 -12.15512 -12.00796 -11.70942 -11.63857 -11.43306 -11.33334 -11.20168 -11.05773 -10.83600 -10.79254 -10.64821 -10.46355 -10.36258 -10.15502 -9.59673 -9.31872 -8.99882 -8.80366 -8.74665 -8.66582 -8.29913 -7.73817 -6.27411 -4.35734 1.15179 1.20146 3.13353 3.22062 3.30159 3.33411 3.54545 3.77505 4.26960 4.33350 4.40450 4.54905 4.67658 4.71155 4.77796 4.91678 4.94994 5.00427 5.01465 5.29483 5.32690 5.35899 5.38324 5.43586 5.53021 5.56300 5.58197 5.68992 5.72351 5.76725 5.79089 5.82373 5.87738 5.92855 6.02185 6.07653 6.11172 6.12357 6.29807 6.34991 6.46232 6.51715 6.73262 6.78996 6.82624 6.90000 7.00259 7.27669 7.33975 7.65660 7.74995 8.04245 8.55415 8.68376 9.15686 9.31998 9.41623 10.80492 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.023173 B = 0.002232 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.005278 B =12539.090415 C =13165.008892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 C -0.122 4.122 4 C -0.123 4.123 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.065 4.065 8 C -0.034 4.034 9 C -0.150 4.150 10 C -0.160 4.160 11 C 0.151 3.849 12 N -0.749 5.749 13 C 0.715 3.285 14 O -0.598 6.598 15 N -0.631 5.631 16 C 0.104 3.896 17 C -0.116 4.116 18 C 0.247 3.753 19 O -0.586 6.586 20 C -0.536 4.536 21 H 0.067 0.933 22 C 0.070 3.930 23 N -0.894 5.894 24 Si 0.903 3.097 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.123 3.877 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.392 0.608 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.384 0.616 50 H 0.270 0.730 51 H 0.062 0.938 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.189 23.414 -2.355 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.079 4.079 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.140 4.140 6 C -0.134 4.134 7 C -0.065 4.065 8 C -0.034 4.034 9 C -0.207 4.207 10 C -0.217 4.217 11 C 0.026 3.974 12 N -0.407 5.407 13 C 0.417 3.583 14 O -0.477 6.477 15 N -0.368 5.368 16 C -0.019 4.019 17 C -0.154 4.154 18 C 0.207 3.793 19 O -0.395 6.395 20 C -0.575 4.575 21 H 0.085 0.915 22 C -0.133 4.133 23 N -0.533 5.533 24 Si 0.731 3.269 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 C 0.001 3.999 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.227 0.773 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.235 0.765 50 H 0.080 0.920 51 H 0.081 0.919 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.643 23.680 -2.339 24.455 hybrid contribution 0.681 -0.981 -0.271 1.225 sum -4.963 22.698 -2.610 23.381 Atomic orbital electron populations 1.21379 0.91693 1.03679 1.02367 1.19643 0.95872 0.92386 0.99990 1.20976 0.94270 0.97291 1.01419 1.21115 0.94313 0.98001 1.00641 1.21148 0.99955 0.92443 1.00433 1.21287 0.93777 0.98770 0.99584 1.19508 0.93355 0.93435 1.00218 1.19670 0.95346 0.91542 0.96878 1.22123 1.00377 1.02296 0.95885 1.22354 0.99045 1.02958 0.97353 1.21247 0.93277 0.80843 1.02005 1.45126 1.10055 1.04624 1.80889 1.15511 0.84915 0.79580 0.78324 1.90882 1.12075 1.86114 1.58604 1.48023 1.07581 1.05887 1.75308 1.22218 0.81684 0.98432 0.99608 1.22719 1.00341 0.92588 0.99719 1.19503 0.87452 0.90521 0.81832 1.86084 1.45134 1.79584 1.28717 1.21544 1.18251 1.09718 1.07962 0.91500 1.25080 0.95254 0.97936 0.95068 1.69654 1.24323 1.39011 1.20319 0.86350 0.78475 0.82014 0.80075 1.19605 1.20773 1.20753 1.22924 0.97885 0.77614 1.01527 0.90917 0.91883 0.89242 0.86294 0.86319 0.86095 0.85240 0.92014 0.91115 0.91935 0.92219 0.90297 0.92164 0.91672 0.91618 0.77319 0.92763 0.92075 0.90559 0.90609 0.76490 0.92018 0.91930 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 7.62 36.01 0.27 -0.62 16 2 C -0.08 -0.70 5.58 -104.62 -0.58 -1.28 16 3 C -0.12 -1.03 9.73 -39.58 -0.38 -1.41 16 4 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 5 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 6 C -0.12 -1.23 9.00 -39.58 -0.36 -1.59 16 7 C -0.06 -0.65 4.75 -104.62 -0.50 -1.14 16 8 C -0.03 -0.33 0.50 -155.66 -0.08 -0.41 16 9 C -0.15 -1.30 7.69 37.16 0.29 -1.01 16 10 C -0.16 -1.41 7.81 37.16 0.29 -1.12 16 11 C 0.15 1.96 3.17 -4.04 -0.01 1.95 16 12 N -0.75 -11.10 4.97 -65.22 -0.32 -11.43 16 13 C 0.71 14.53 8.49 -86.93 -0.74 13.80 16 14 O -0.60 -14.57 16.67 5.29 0.09 -14.48 16 15 N -0.63 -13.08 3.33 -175.99 -0.59 -13.67 16 16 C 0.10 1.79 6.57 -2.53 -0.02 1.78 16 17 C -0.12 -2.27 6.23 -24.59 -0.15 -2.42 16 18 C 0.25 5.97 0.85 -89.94 -0.08 5.89 16 19 O -0.59 -14.72 13.08 -35.23 -0.46 -15.18 16 20 C -0.54 -14.00 8.11 -34.44 -0.28 -14.28 16 21 H 0.07 1.72 7.77 -52.49 -0.41 1.31 16 22 C 0.07 1.83 5.27 -17.82 -0.09 1.73 16 23 N -0.89 -23.93 10.96 55.43 0.61 -23.32 16 24 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 C 0.12 3.01 5.39 -2.90 -0.02 2.99 16 29 H 0.07 0.44 7.42 -51.93 -0.39 0.05 16 30 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.09 0.57 3.32 -51.93 -0.17 0.39 16 32 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.13 1.41 5.91 -52.49 -0.31 1.10 16 36 H 0.06 0.49 7.29 -51.93 -0.38 0.11 16 37 H 0.07 0.53 5.25 -51.93 -0.27 0.25 16 38 H 0.06 0.61 8.03 -51.93 -0.42 0.19 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.56 3.94 -51.93 -0.20 0.36 16 41 H 0.06 0.53 6.86 -51.93 -0.36 0.17 16 42 H 0.07 0.93 7.80 -51.93 -0.41 0.52 16 43 H 0.07 0.91 7.22 -51.93 -0.38 0.54 16 44 H 0.39 4.86 4.88 -40.82 -0.20 4.66 16 45 H 0.05 0.74 7.30 -51.93 -0.38 0.36 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 48 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 49 H 0.38 9.96 7.24 45.56 0.33 10.29 16 50 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 51 H 0.06 1.68 8.00 -51.93 -0.42 1.27 16 52 H 0.06 1.71 7.81 -51.92 -0.41 1.30 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -30.84 395.83 -10.23 -41.07 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -7.26 Total: 15.70 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -3.23 Total: -0.16 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.30 Total: -48.42 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.37 Total: -29.66 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.84 -10.23 -41.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591942098.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.030 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds