Wall clock time and date at job start Sat Apr 11 2020 07:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86806 * 119.99748 * 2 1 4 4 H 1.48498 * 109.47026 * 240.00415 * 3 2 1 5 5 H 1.48504 * 109.46813 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46752 * 119.99994 * 3 2 1 7 7 C 1.38650 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00633 * 179.97438 * 7 2 1 9 9 O 1.34838 * 119.99715 * 0.27761 * 7 2 1 10 10 C 1.35749 * 116.99991 * 174.67019 * 9 7 2 11 11 C 1.38902 * 120.06694 * 5.53339 * 10 9 7 12 12 C 1.38082 * 119.92778 * 180.02562 * 11 10 9 13 13 C 1.38327 * 120.07031 * 0.02562 * 12 11 10 14 14 C 1.38281 * 120.13592 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.96498 * 179.97438 * 14 13 12 16 16 N 1.46897 * 109.47046 * 90.00156 * 15 14 13 17 17 C 1.46903 * 111.00011 * 180.02562 * 16 15 14 18 18 C 1.53120 * 109.52323 * 274.68130 * 17 16 15 19 19 C 1.53039 * 109.27780 * 182.44025 * 18 17 16 20 20 N 1.46848 * 109.52207 * 59.18365 * 19 18 17 21 21 C 1.46898 * 110.99702 * 174.16170 * 20 19 18 22 22 H 1.09000 * 110.45994 * 66.51340 * 21 20 19 23 23 C 1.54510 * 110.51085 * 189.12023 * 21 20 19 24 24 C 1.54474 * 104.06397 * 118.63997 * 23 21 20 25 25 O 1.44424 * 104.80472 * 23.98055 * 24 23 21 26 26 C 1.44637 * 105.36882 * 319.56506 * 25 24 23 27 27 C 1.46849 * 111.19513 * 298.25593 * 20 19 18 28 28 C 1.53035 * 109.52443 * 61.74496 * 27 20 19 29 29 C 1.38120 * 120.06941 * 359.68346 * 14 13 12 30 30 H 0.97000 * 120.00202 * 359.97438 * 1 2 3 31 31 H 1.07993 * 120.03728 * 359.97438 * 11 10 9 32 32 H 1.07999 * 119.96591 * 180.02562 * 12 11 10 33 33 H 1.08000 * 119.93148 * 179.97438 * 13 12 11 34 34 H 1.09002 * 109.47254 * 210.00287 * 15 14 13 35 35 H 1.09000 * 109.46956 * 330.00551 * 15 14 13 36 36 H 1.00902 * 111.00206 * 56.04636 * 16 15 14 37 37 H 1.09001 * 109.52243 * 34.87575 * 17 16 15 38 38 H 1.09000 * 109.50376 * 302.38360 * 18 17 16 39 39 H 1.09001 * 109.49720 * 62.50114 * 18 17 16 40 40 H 1.08995 * 109.46249 * 299.16285 * 19 18 17 41 41 H 1.09000 * 109.45891 * 179.19622 * 19 18 17 42 42 H 1.09003 * 110.51043 * 237.29118 * 23 21 20 43 43 H 1.09004 * 110.51061 * 359.85912 * 23 21 20 44 44 H 1.09000 * 110.36905 * 142.80921 * 24 23 21 45 45 H 1.08994 * 110.37638 * 265.03413 * 24 23 21 46 46 H 1.09002 * 110.34226 * 281.58884 * 26 25 24 47 47 H 1.09002 * 110.51370 * 159.18688 * 26 25 24 48 48 H 1.09004 * 109.45943 * 301.72481 * 27 20 19 49 49 H 1.09007 * 109.45203 * 181.75722 * 27 20 19 50 50 H 1.09000 * 109.50210 * 180.87666 * 28 27 20 51 51 H 1.09002 * 109.53555 * 60.77862 * 28 27 20 52 52 H 1.08008 * 120.03699 * 180.31397 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1032 1.6966 -1.2125 5 1 1.2844 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0090 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0067 10 6 2.0701 -3.5040 -0.1192 11 6 3.4576 -3.4388 -0.1059 12 6 4.2027 -4.5956 -0.2211 13 6 3.5689 -5.8183 -0.3502 14 6 2.1879 -5.8863 -0.3649 15 6 1.5014 -7.2204 -0.5064 16 7 1.2706 -7.7959 0.8253 17 6 0.6020 -9.1002 0.7264 18 6 -0.9124 -8.8933 0.6345 19 6 -1.6070 -10.2563 0.5931 20 7 -1.2713 -11.0151 1.8048 21 6 -2.0294 -12.2719 1.8657 22 1 -1.7196 -12.9429 1.0646 23 6 -1.8442 -12.9497 3.2417 24 6 -3.2714 -13.0002 3.8305 25 8 -4.1462 -12.9539 2.6822 26 6 -3.5467 -11.9934 1.7822 27 6 0.1729 -11.2670 1.8905 28 6 0.9206 -9.9341 1.9705 29 6 1.4369 -4.7334 -0.2440 30 1 -0.4850 0.8400 0.0004 31 1 3.9530 -2.4844 -0.0063 32 1 5.2815 -4.5457 -0.2103 33 1 4.1539 -6.7216 -0.4406 34 1 0.5465 -7.0856 -1.0144 35 1 2.1310 -7.8930 -1.0887 36 1 0.7432 -7.1620 1.4068 37 1 0.9538 -9.6235 -0.1627 38 1 -1.2570 -8.3355 1.5052 39 1 -1.1491 -8.3366 -0.2722 40 1 -1.2723 -10.8080 -0.2853 41 1 -2.6862 -10.1125 0.5420 42 1 -1.4450 -13.9568 3.1208 43 1 -1.1880 -12.3535 3.8759 44 1 -3.4208 -13.9272 4.3842 45 1 -3.4458 -12.1405 4.4774 46 1 -3.7648 -10.9777 2.1120 47 1 -3.9054 -12.1480 0.7645 48 1 0.4992 -11.8140 1.0059 49 1 0.3862 -11.8572 2.7817 50 1 1.9934 -10.1211 2.0184 51 1 0.6054 -9.3924 2.8623 52 1 0.3582 -4.7876 -0.2505 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771768284.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:29 Heat of formation + Delta-G solvation = -42.333697 kcal Electronic energy + Delta-G solvation = -29722.228498 eV Core-core repulsion = 25686.971902 eV Total energy + Delta-G solvation = -4035.256596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39248 -39.15401 -38.62916 -36.89789 -35.60893 -32.85883 -32.24748 -31.48222 -30.78657 -29.70106 -28.98750 -28.06193 -25.53221 -24.74094 -24.07433 -22.89829 -22.25309 -21.55678 -20.80830 -20.71607 -20.01713 -17.68937 -17.33840 -16.94601 -16.78576 -15.84982 -15.45270 -15.13629 -15.12156 -15.04838 -14.80348 -14.45836 -14.28166 -14.25527 -14.05263 -13.56480 -13.48826 -13.32167 -13.01059 -12.74569 -12.63371 -12.47633 -12.25182 -12.01741 -11.80882 -11.63686 -11.58897 -11.45081 -11.30415 -11.21174 -11.17632 -10.85268 -10.78764 -10.73964 -10.60471 -10.53938 -10.35063 -10.15939 -9.33808 -8.82834 -8.72562 -8.37313 -8.03786 -7.21528 -6.43618 -4.03014 2.11328 2.40437 3.13601 3.14652 3.17375 3.30063 3.71001 3.97316 4.09386 4.14346 4.39150 4.53413 4.59596 4.65405 4.67025 4.83334 4.90980 4.91741 4.98706 5.07330 5.11532 5.18882 5.24647 5.28694 5.31691 5.32938 5.34963 5.40336 5.44257 5.50823 5.53622 5.55362 5.59891 5.71858 5.79175 5.84102 5.88823 5.98028 6.03106 6.13831 6.20762 6.31096 6.33920 6.66802 6.71064 6.74795 6.92009 7.07599 7.09351 7.28769 7.39774 7.44373 7.48294 7.83842 8.01232 9.02120 9.72429 10.74462 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.001761 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.319917 B =15900.611442 C =16965.957800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.152 3.848 11 C -0.231 4.231 12 C -0.078 4.078 13 C -0.189 4.189 14 C -0.047 4.047 15 C 0.107 3.893 16 N -0.678 5.678 17 C 0.087 3.913 18 C -0.148 4.148 19 C 0.057 3.943 20 N -0.528 5.528 21 C 0.050 3.950 22 H 0.054 0.946 23 C -0.149 4.149 24 C 0.048 3.952 25 O -0.378 6.378 26 C 0.051 3.949 27 C 0.056 3.944 28 C -0.103 4.103 29 C -0.185 4.185 30 H 0.270 0.730 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.347 0.653 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.032 0.968 49 H 0.077 0.923 50 H 0.074 0.926 51 H 0.073 0.927 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.877 -24.825 3.434 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.084 6.084 10 C 0.099 3.901 11 C -0.250 4.250 12 C -0.096 4.096 13 C -0.209 4.209 14 C -0.048 4.048 15 C -0.022 4.022 16 N -0.308 5.308 17 C -0.023 4.023 18 C -0.187 4.187 19 C -0.071 4.071 20 N -0.254 5.254 21 C -0.059 4.059 22 H 0.072 0.928 23 C -0.187 4.187 24 C -0.029 4.029 25 O -0.296 6.296 26 C -0.026 4.026 27 C -0.072 4.072 28 C -0.141 4.141 29 C -0.205 4.205 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.166 0.834 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.108 0.892 48 H 0.051 0.949 49 H 0.096 0.904 50 H 0.093 0.907 51 H 0.091 0.909 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.014 -24.709 3.864 25.091 hybrid contribution 0.106 0.822 -0.964 1.271 sum -1.908 -23.887 2.901 24.138 Atomic orbital electron populations 1.70028 1.05928 1.27707 1.46288 1.25275 0.95839 0.98786 0.96622 0.85795 0.78699 0.79850 0.79164 1.19539 1.20302 1.19518 1.21262 0.91741 0.80853 1.52942 0.89186 1.83977 1.34234 1.11421 1.78718 1.19312 0.90272 0.88023 0.92499 1.21191 0.93842 0.99009 1.10983 1.20749 0.98431 0.92422 0.97990 1.20411 0.93490 0.96765 1.10192 1.19163 0.93509 0.92644 0.99464 1.20812 0.98144 0.93074 0.90121 1.60603 1.52416 1.04391 1.13358 1.21624 0.91035 0.91323 0.98327 1.22362 0.96832 0.96671 1.02872 1.22064 1.00445 0.94415 0.90178 1.62076 1.06376 1.18192 1.38754 1.23005 0.94590 0.90796 0.97492 0.92799 1.23020 0.98460 1.01007 0.96228 1.23376 0.88127 1.02190 0.89172 1.89155 1.48031 1.62095 1.30302 1.23551 0.90602 0.93736 0.94717 1.22148 0.86603 0.97698 1.00782 1.21549 0.99821 0.94228 0.98522 1.20019 0.99036 0.90138 1.11296 0.92025 0.85679 0.87526 0.87671 0.94730 0.90826 0.83422 0.91027 0.90559 0.91311 0.94793 0.90590 0.90743 0.89191 0.89206 0.91864 0.90866 0.89248 0.94925 0.90440 0.90721 0.90869 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.38 13.67 55.48 0.76 -24.63 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.57 29.55 -169.99 -5.02 15.54 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.97 9.49 30.88 0.29 -10.68 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 9 O -0.18 -5.13 9.76 0.03 0.00 -5.13 16 10 C 0.15 3.68 6.65 -39.11 -0.26 3.42 16 11 C -0.23 -5.05 9.17 -39.39 -0.36 -5.41 16 12 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.19 -3.30 9.70 -39.53 -0.38 -3.68 16 14 C -0.05 -0.83 5.39 -104.65 -0.56 -1.39 16 15 C 0.11 1.47 5.61 -4.98 -0.03 1.44 16 16 N -0.68 -8.46 6.24 -107.86 -0.67 -9.14 16 17 C 0.09 0.87 2.53 -67.59 -0.17 0.70 16 18 C -0.15 -1.39 5.35 -26.65 -0.14 -1.53 16 19 C 0.06 0.47 5.22 -3.83 -0.02 0.45 16 20 N -0.53 -4.27 4.44 -224.81 -1.00 -5.27 16 21 C 0.05 0.37 2.84 -66.14 -0.19 0.19 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 23 C -0.15 -0.97 6.17 -25.17 -0.16 -1.13 16 24 C 0.05 0.34 7.64 37.93 0.29 0.63 16 25 O -0.38 -3.64 11.65 -35.23 -0.41 -4.05 16 26 C 0.05 0.41 5.95 37.94 0.23 0.63 16 27 C 0.06 0.43 5.26 -3.83 -0.02 0.41 16 28 C -0.10 -0.93 5.70 -26.65 -0.15 -1.08 16 29 C -0.18 -3.85 9.65 -39.40 -0.38 -4.23 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 32 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.03 0.46 7.46 -51.93 -0.39 0.08 16 35 H 0.07 0.94 8.00 -51.93 -0.42 0.52 16 36 H 0.35 4.61 8.44 -39.29 -0.33 4.28 16 37 H 0.07 0.72 7.80 -51.93 -0.41 0.32 16 38 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 39 H 0.07 0.67 7.54 -51.93 -0.39 0.28 16 40 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.58 6.51 -51.93 -0.34 0.25 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.59 6.86 -51.93 -0.36 0.23 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.61 7.52 -51.93 -0.39 0.22 16 47 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.08 0.54 6.54 -51.92 -0.34 0.20 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 52 H 0.11 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 405.84 15.07 6.12 6.12 Total: -1.00 -30.58 405.84 -11.29 -41.87 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -8.55 Total: 6.82 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -2.51 Total: -22.14 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: -0.91 Total: -39.03 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.41 Total: -9.18 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.58 -11.29 -41.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771768284.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.459 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds