Wall clock time and date at job start Sat Apr 11 2020 07:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86806 * 119.99748 * 2 1 4 4 H 1.48498 * 109.47026 * 240.00415 * 3 2 1 5 5 H 1.48504 * 109.46813 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46752 * 119.99994 * 3 2 1 7 7 C 1.38650 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00633 * 179.97438 * 7 2 1 9 9 O 1.34838 * 119.99715 * 0.27761 * 7 2 1 10 10 C 1.35749 * 116.99991 * 174.67019 * 9 7 2 11 11 C 1.38902 * 120.06694 * 5.53339 * 10 9 7 12 12 C 1.38082 * 119.92778 * 180.02562 * 11 10 9 13 13 C 1.38327 * 120.07031 * 0.02562 * 12 11 10 14 14 C 1.38281 * 120.13592 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.96498 * 179.97438 * 14 13 12 16 16 N 1.46897 * 109.47046 * 90.00156 * 15 14 13 17 17 C 1.46903 * 111.00011 * 180.02562 * 16 15 14 18 18 C 1.53120 * 109.52323 * 274.68130 * 17 16 15 19 19 C 1.53039 * 109.27780 * 182.44025 * 18 17 16 20 20 N 1.46848 * 109.52207 * 59.18365 * 19 18 17 21 21 C 1.46898 * 110.99702 * 174.16170 * 20 19 18 22 22 H 1.09000 * 110.45994 * 66.51340 * 21 20 19 23 23 C 1.54510 * 110.51085 * 189.12023 * 21 20 19 24 24 C 1.54474 * 104.06397 * 118.63997 * 23 21 20 25 25 O 1.44424 * 104.80472 * 23.98055 * 24 23 21 26 26 C 1.44637 * 105.36882 * 319.56506 * 25 24 23 27 27 C 1.46849 * 111.19513 * 298.25593 * 20 19 18 28 28 C 1.53035 * 109.52443 * 61.74496 * 27 20 19 29 29 C 1.38120 * 120.06941 * 359.68346 * 14 13 12 30 30 H 0.97000 * 120.00202 * 359.97438 * 1 2 3 31 31 H 1.07993 * 120.03728 * 359.97438 * 11 10 9 32 32 H 1.07999 * 119.96591 * 180.02562 * 12 11 10 33 33 H 1.08000 * 119.93148 * 179.97438 * 13 12 11 34 34 H 1.09002 * 109.47254 * 210.00287 * 15 14 13 35 35 H 1.09000 * 109.46956 * 330.00551 * 15 14 13 36 36 H 1.00902 * 111.00206 * 56.04636 * 16 15 14 37 37 H 1.09001 * 109.52243 * 34.87575 * 17 16 15 38 38 H 1.09000 * 109.50376 * 302.38360 * 18 17 16 39 39 H 1.09001 * 109.49720 * 62.50114 * 18 17 16 40 40 H 1.08995 * 109.46249 * 299.16285 * 19 18 17 41 41 H 1.09000 * 109.45891 * 179.19622 * 19 18 17 42 42 H 1.09003 * 110.51043 * 237.29118 * 23 21 20 43 43 H 1.09004 * 110.51061 * 359.85912 * 23 21 20 44 44 H 1.09000 * 110.36905 * 142.80921 * 24 23 21 45 45 H 1.08994 * 110.37638 * 265.03413 * 24 23 21 46 46 H 1.09002 * 110.34226 * 281.58884 * 26 25 24 47 47 H 1.09002 * 110.51370 * 159.18688 * 26 25 24 48 48 H 1.09004 * 109.45943 * 301.72481 * 27 20 19 49 49 H 1.09007 * 109.45203 * 181.75722 * 27 20 19 50 50 H 1.09000 * 109.50210 * 180.87666 * 28 27 20 51 51 H 1.09002 * 109.53555 * 60.77862 * 28 27 20 52 52 H 1.08008 * 120.03699 * 180.31397 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1032 1.6966 -1.2125 5 1 1.2844 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0090 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0067 10 6 2.0701 -3.5040 -0.1192 11 6 3.4576 -3.4388 -0.1059 12 6 4.2027 -4.5956 -0.2211 13 6 3.5689 -5.8183 -0.3502 14 6 2.1879 -5.8863 -0.3649 15 6 1.5014 -7.2204 -0.5064 16 7 1.2706 -7.7959 0.8253 17 6 0.6020 -9.1002 0.7264 18 6 -0.9124 -8.8933 0.6345 19 6 -1.6070 -10.2563 0.5931 20 7 -1.2713 -11.0151 1.8048 21 6 -2.0294 -12.2719 1.8657 22 1 -1.7196 -12.9429 1.0646 23 6 -1.8442 -12.9497 3.2417 24 6 -3.2714 -13.0002 3.8305 25 8 -4.1462 -12.9539 2.6822 26 6 -3.5467 -11.9934 1.7822 27 6 0.1729 -11.2670 1.8905 28 6 0.9206 -9.9341 1.9705 29 6 1.4369 -4.7334 -0.2440 30 1 -0.4850 0.8400 0.0004 31 1 3.9530 -2.4844 -0.0063 32 1 5.2815 -4.5457 -0.2103 33 1 4.1539 -6.7216 -0.4406 34 1 0.5465 -7.0856 -1.0144 35 1 2.1310 -7.8930 -1.0887 36 1 0.7432 -7.1620 1.4068 37 1 0.9538 -9.6235 -0.1627 38 1 -1.2570 -8.3355 1.5052 39 1 -1.1491 -8.3366 -0.2722 40 1 -1.2723 -10.8080 -0.2853 41 1 -2.6862 -10.1125 0.5420 42 1 -1.4450 -13.9568 3.1208 43 1 -1.1880 -12.3535 3.8759 44 1 -3.4208 -13.9272 4.3842 45 1 -3.4458 -12.1405 4.4774 46 1 -3.7648 -10.9777 2.1120 47 1 -3.9054 -12.1480 0.7645 48 1 0.4992 -11.8140 1.0059 49 1 0.3862 -11.8572 2.7817 50 1 1.9934 -10.1211 2.0184 51 1 0.6054 -9.3924 2.8623 52 1 0.3582 -4.7876 -0.2505 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771768284.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:28 Heat of formation + Delta-G solvation = -62.841450 kcal Electronic energy + Delta-G solvation = -29723.117781 eV Core-core repulsion = 25686.971902 eV Total energy + Delta-G solvation = -4036.145879 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.06017 -40.76282 -39.48775 -38.42758 -36.65013 -34.32135 -33.75655 -32.18139 -31.79183 -30.87624 -30.28558 -28.90210 -27.39497 -26.03010 -24.72659 -23.76753 -23.14006 -22.88123 -22.28488 -21.41421 -20.83032 -19.47345 -18.78314 -17.96008 -17.37872 -16.73689 -16.67878 -16.42929 -16.16961 -16.05037 -15.97522 -15.70634 -15.45703 -15.41413 -15.23404 -14.89493 -14.58489 -14.25067 -13.98623 -13.92330 -13.74851 -13.60106 -13.36453 -13.21884 -12.98127 -12.90047 -12.45913 -12.43674 -12.32782 -12.24811 -12.21588 -12.11564 -12.11477 -11.88372 -11.75600 -11.47895 -11.34454 -11.15505 -10.79600 -10.78913 -9.71693 -9.34298 -9.25195 -8.96733 -8.46433 -6.14875 0.53377 0.77295 1.34654 1.45590 1.50924 2.18021 2.68909 2.79690 3.10143 3.13204 3.34216 3.52866 3.54465 3.79082 3.84376 3.93402 4.01147 4.05786 4.12178 4.14047 4.26904 4.31690 4.34721 4.36776 4.41396 4.48343 4.57422 4.60874 4.63790 4.67932 4.72650 4.74571 4.79415 4.80731 4.83907 4.90554 4.94549 5.01384 5.02922 5.07617 5.12494 5.14016 5.25306 5.32664 5.38353 5.66882 5.71414 5.74846 5.81595 6.03103 6.07411 6.11426 6.14420 6.26452 6.39397 6.98331 7.79717 8.76607 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.001761 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.319917 B =15900.611442 C =16965.957800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.245 4.245 12 C -0.074 4.074 13 C -0.170 4.170 14 C -0.037 4.037 15 C 0.112 3.888 16 N -0.681 5.681 17 C 0.091 3.909 18 C -0.143 4.143 19 C 0.061 3.939 20 N -0.535 5.535 21 C 0.052 3.948 22 H 0.058 0.942 23 C -0.144 4.144 24 C 0.043 3.957 25 O -0.400 6.400 26 C 0.050 3.950 27 C 0.060 3.940 28 C -0.097 4.097 29 C -0.195 4.195 30 H 0.272 0.728 31 H 0.117 0.883 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.036 0.964 35 H 0.096 0.904 36 H 0.339 0.661 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.038 0.962 49 H 0.088 0.912 50 H 0.077 0.923 51 H 0.060 0.940 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.470 -27.399 3.221 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.837 3.163 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.264 4.264 12 C -0.092 4.092 13 C -0.189 4.189 14 C -0.038 4.038 15 C -0.016 4.016 16 N -0.310 5.310 17 C -0.019 4.019 18 C -0.183 4.183 19 C -0.068 4.068 20 N -0.262 5.262 21 C -0.056 4.056 22 H 0.076 0.924 23 C -0.182 4.182 24 C -0.033 4.033 25 O -0.319 6.319 26 C -0.027 4.027 27 C -0.068 4.068 28 C -0.135 4.135 29 C -0.215 4.215 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.054 0.946 35 H 0.114 0.886 36 H 0.157 0.843 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.123 0.877 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.115 0.885 48 H 0.057 0.943 49 H 0.107 0.893 50 H 0.095 0.905 51 H 0.078 0.922 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.365 -27.349 3.652 27.595 hybrid contribution -0.553 1.280 -0.895 1.657 sum -0.188 -26.070 2.756 26.216 Atomic orbital electron populations 1.70180 1.07989 1.28789 1.49028 1.26588 0.96872 1.02735 0.95956 0.84659 0.77394 0.74314 0.79918 1.18182 1.19646 1.18163 1.21767 0.92477 0.81484 1.53193 0.88202 1.83939 1.35887 1.12585 1.81661 1.19891 0.91641 0.87930 0.94404 1.21306 0.93125 1.00231 1.11749 1.21163 1.00226 0.91458 0.96307 1.20948 0.93535 0.97755 1.06698 1.19586 0.93948 0.93210 0.97014 1.20803 0.98345 0.91311 0.91131 1.60635 1.52971 1.05075 1.12355 1.21667 0.90981 0.90063 0.99182 1.22280 0.96749 0.97301 1.01962 1.22013 1.00506 0.93694 0.90568 1.62059 1.06753 1.18676 1.38693 1.22994 0.93946 0.90492 0.98196 0.92395 1.23004 0.98015 1.01622 0.95531 1.23525 0.88224 1.02903 0.88687 1.89131 1.49120 1.62423 1.31237 1.23587 0.91136 0.93083 0.94906 1.22121 0.86117 0.96958 1.01600 1.21481 1.00120 0.94577 0.97338 1.20230 0.99206 0.90400 1.11704 0.91900 0.86517 0.83805 0.83784 0.94564 0.88554 0.84268 0.90231 0.91964 0.91817 0.94153 0.90327 0.89468 0.89084 0.87739 0.92147 0.91708 0.88470 0.94334 0.89338 0.90477 0.92160 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.07 13.67 21.61 0.30 -56.77 16 2 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 3 Si 1.02 43.20 29.55 68.60 2.03 45.23 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.41 -24.32 9.49 67.92 0.64 -23.68 16 8 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 9 O -0.23 -14.24 9.76 -22.81 -0.22 -14.46 16 10 C 0.11 5.61 6.65 22.58 0.15 5.76 16 11 C -0.24 -10.77 9.17 22.39 0.21 -10.56 16 12 C -0.07 -2.53 10.04 22.25 0.22 -2.31 16 13 C -0.17 -5.31 9.70 22.30 0.22 -5.10 16 14 C -0.04 -1.23 5.39 -19.88 -0.11 -1.34 16 15 C 0.11 2.80 5.61 85.56 0.48 3.28 16 16 N -0.68 -15.66 6.24 -495.16 -3.09 -18.75 16 17 C 0.09 1.62 2.53 45.00 0.11 1.73 16 18 C -0.14 -2.56 5.35 30.65 0.16 -2.39 16 19 C 0.06 0.90 5.22 86.33 0.45 1.35 16 20 N -0.54 -7.73 4.44 -865.16 -3.84 -11.57 16 21 C 0.05 0.69 2.84 45.93 0.13 0.82 16 22 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 23 C -0.14 -1.59 6.17 31.61 0.20 -1.39 16 24 C 0.04 0.56 7.64 72.48 0.55 1.11 16 25 O -0.40 -7.36 11.65 -148.98 -1.74 -9.10 16 26 C 0.05 0.75 5.95 72.49 0.43 1.18 16 27 C 0.06 0.78 5.26 86.32 0.45 1.23 16 28 C -0.10 -1.55 5.70 30.65 0.17 -1.37 16 29 C -0.20 -8.33 9.65 22.39 0.22 -8.12 16 30 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 31 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 32 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.04 0.91 7.46 -2.39 -0.02 0.89 16 35 H 0.10 2.02 8.00 -2.39 -0.02 2.01 16 36 H 0.34 8.79 8.44 -89.69 -0.76 8.04 16 37 H 0.08 1.34 7.80 -2.39 -0.02 1.32 16 38 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 39 H 0.06 1.19 7.54 -2.39 -0.02 1.18 16 40 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.08 1.13 6.51 -2.39 -0.02 1.12 16 42 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.09 1.00 6.86 -2.39 -0.02 0.98 16 44 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 45 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.06 1.06 7.52 -2.39 -0.02 1.05 16 47 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.09 0.98 6.54 -2.38 -0.02 0.97 16 50 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -70.73 405.84 -1.24 -71.97 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: 0.16 Total: 34.17 kcal Atomic # 6 Polarization: -45.89 SS G_CDS: 5.16 Total: -40.72 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -6.63 Total: -87.09 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -1.96 Total: -23.56 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -70.73 -1.24 -71.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771768284.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.132 kcal (2) G-P(sol) polarization free energy of solvation -70.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds