Wall clock time and date at job start Sat Apr 11 2020 07:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99984 * 2 1 4 4 H 1.48499 * 109.47025 * 240.00112 * 3 2 1 5 5 H 1.48495 * 109.46903 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46719 * 120.00239 * 3 2 1 7 7 C 1.37876 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00470 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99813 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47232 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47117 * 304.99614 * 10 9 7 12 12 N 1.46494 * 109.47302 * 64.99671 * 10 9 7 13 13 C 1.34777 * 120.00188 * 205.00083 * 12 10 9 14 14 O 1.21276 * 119.99980 * 0.02562 * 13 12 10 15 15 C 1.50695 * 119.99779 * 180.02562 * 13 12 10 16 16 N 1.46899 * 109.47010 * 179.97438 * 15 13 12 17 17 C 1.46843 * 111.00136 * 294.21058 * 16 15 13 18 18 C 1.53045 * 109.52213 * 174.16069 * 17 16 15 19 19 C 1.53109 * 109.27920 * 59.18026 * 18 17 16 20 20 C 1.53001 * 109.57345 * 182.41211 * 19 18 17 21 21 O 1.42902 * 109.47146 * 294.71004 * 20 19 18 22 22 C 1.53126 * 109.16100 * 302.34237 * 19 18 17 23 23 C 1.46853 * 111.00171 * 169.99715 * 16 15 13 24 24 C 1.50703 * 109.46987 * 185.00260 * 10 9 7 25 25 C 1.38235 * 120.00292 * 99.99885 * 24 10 9 26 26 C 1.38230 * 119.99899 * 179.97438 * 25 24 10 27 27 C 1.38235 * 120.00326 * 359.95697 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99503 * 279.97178 * 24 10 9 30 30 H 0.97001 * 120.00530 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.47217 * 59.99672 * 9 7 2 32 32 H 1.08998 * 109.47302 * 300.00083 * 9 7 2 33 33 H 0.97005 * 119.99923 * 25.00414 * 12 10 9 34 34 H 1.08999 * 109.47522 * 299.99759 * 15 13 12 35 35 H 1.09005 * 109.47568 * 60.00078 * 15 13 12 36 36 H 1.08998 * 109.46287 * 294.17231 * 17 16 15 37 37 H 1.09001 * 109.46262 * 54.14298 * 17 16 15 38 38 H 1.09008 * 109.49773 * 299.23438 * 18 17 16 39 39 H 1.09002 * 109.49900 * 179.12731 * 18 17 16 40 40 H 1.08999 * 109.52440 * 62.25094 * 19 18 17 41 41 H 1.08999 * 109.47364 * 54.70964 * 20 19 18 42 42 H 1.09004 * 109.47331 * 174.71790 * 20 19 18 43 43 H 0.96702 * 114.00635 * 179.97438 * 21 20 19 44 44 H 1.08997 * 109.50179 * 297.71870 * 22 19 18 45 45 H 1.09006 * 109.50050 * 177.59756 * 22 19 18 46 46 H 1.08998 * 109.46350 * 305.85873 * 23 16 15 47 47 H 1.09005 * 109.45957 * 65.84021 * 23 16 15 48 48 H 1.08001 * 119.99730 * 359.97438 * 25 24 10 49 49 H 1.08000 * 120.00376 * 179.97438 * 26 25 24 50 50 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 51 51 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 52 52 H 1.07997 * 120.00455 * 0.02562 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 1 2.9294 -3.5545 -0.8445 12 7 3.0064 -3.6550 1.2490 13 6 4.2311 -4.2157 1.2962 14 8 4.7032 -4.7256 0.3023 15 6 5.0136 -4.2089 2.5840 16 7 6.3056 -4.8761 2.3754 17 6 6.1197 -6.3027 2.0809 18 6 7.4692 -6.9319 1.7271 19 6 8.4330 -6.7559 2.9037 20 6 9.8026 -7.3294 2.5346 21 8 9.6939 -8.7426 2.3522 22 6 8.5716 -5.2644 3.2211 23 6 7.1902 -4.6835 3.5316 24 6 1.4959 -4.9635 -0.1278 25 6 1.4100 -5.5967 -1.3536 26 6 0.7231 -6.7908 -1.4681 27 6 0.1226 -7.3521 -0.3567 28 6 0.2096 -6.7196 0.8694 29 6 0.8947 -5.5244 0.9835 30 1 -0.4851 0.8400 0.0004 31 1 0.6246 -2.5563 -0.8920 32 1 0.6240 -2.5575 0.8880 33 1 2.6288 -3.2469 2.0439 34 1 5.1828 -3.1799 2.9011 35 1 4.4518 -4.7385 3.3535 36 1 5.7039 -6.8029 2.9555 37 1 5.4355 -6.4137 1.2396 38 1 7.8792 -6.4413 0.8442 39 1 7.3332 -7.9941 1.5237 40 1 8.0421 -7.2793 3.7763 41 1 10.1520 -6.8696 1.6102 42 1 10.5120 -7.1201 3.3353 43 1 10.5264 -9.1739 2.1154 44 1 8.9989 -4.7476 2.3618 45 1 9.2233 -5.1352 4.0853 46 1 7.2835 -3.6185 3.7441 47 1 6.7695 -5.1915 4.3994 48 1 1.8798 -5.1585 -2.2218 49 1 0.6556 -7.2853 -2.4258 50 1 -0.4179 -8.2828 -0.4470 51 1 -0.2598 -7.1579 1.7377 52 1 0.9617 -5.0297 1.9412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772080883.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:43 Heat of formation + Delta-G solvation = -71.216376 kcal Electronic energy + Delta-G solvation = -30857.800926 eV Core-core repulsion = 26821.291883 eV Total energy + Delta-G solvation = -4036.509043 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.94019 -39.13000 -38.19961 -36.82381 -35.13523 -33.66463 -32.72036 -31.19676 -30.84857 -30.45320 -28.99745 -28.21842 -25.61760 -24.48529 -23.23604 -22.28564 -21.98237 -21.82983 -20.24637 -19.80437 -19.63285 -17.56312 -16.98457 -16.49742 -16.16420 -16.00813 -15.59449 -15.17407 -15.08070 -14.82500 -14.55125 -14.48968 -14.23781 -14.01109 -13.74791 -13.29853 -13.08646 -13.01253 -12.83375 -12.73804 -12.49570 -12.20630 -12.09513 -12.04961 -11.66118 -11.53071 -11.25433 -11.12632 -10.91169 -10.77841 -10.71536 -10.63322 -10.52731 -10.49951 -10.43485 -10.12757 -9.76258 -9.31263 -9.18539 -8.53447 -8.45362 -8.36762 -8.24260 -8.14561 -6.08394 -4.11838 1.79326 1.81378 3.18316 3.29078 3.34238 3.37396 3.50707 3.93237 4.11004 4.28177 4.40518 4.60323 4.64867 4.88606 5.06661 5.13193 5.22941 5.25128 5.26391 5.28270 5.28585 5.30856 5.36154 5.42529 5.44639 5.50495 5.52538 5.57265 5.65926 5.76716 5.84831 5.92016 5.93043 5.95598 6.12293 6.19272 6.22816 6.36219 6.37363 6.45272 6.60558 6.85694 6.86740 6.96244 7.00580 7.13606 7.14614 7.35799 7.41785 7.50381 7.64911 7.88368 8.19183 8.27416 8.85468 8.94079 9.53164 11.02102 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.008653 B = 0.003163 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.054817 B = 8851.166686 C =11416.000327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.186 3.814 11 H 0.086 0.914 12 N -0.703 5.703 13 C 0.512 3.488 14 O -0.532 6.532 15 C 0.036 3.964 16 N -0.518 5.518 17 C 0.051 3.949 18 C -0.102 4.102 19 C -0.090 4.090 20 C 0.081 3.919 21 O -0.573 6.573 22 C -0.108 4.108 23 C 0.058 3.942 24 C -0.070 4.070 25 C -0.108 4.108 26 C -0.122 4.122 27 C -0.135 4.135 28 C -0.126 4.126 29 C -0.109 4.109 30 H 0.262 0.738 31 H 0.033 0.967 32 H 0.024 0.976 33 H 0.399 0.601 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.023 0.977 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.377 0.623 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.032 0.968 48 H 0.120 0.880 49 H 0.116 0.884 50 H 0.113 0.887 51 H 0.114 0.886 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.660 -14.495 7.766 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.082 3.918 11 H 0.104 0.896 12 N -0.353 5.353 13 C 0.296 3.704 14 O -0.408 6.408 15 C -0.095 4.095 16 N -0.243 5.243 17 C -0.076 4.076 18 C -0.140 4.140 19 C -0.109 4.109 20 C 0.004 3.996 21 O -0.378 6.378 22 C -0.146 4.146 23 C -0.070 4.070 24 C -0.071 4.071 25 C -0.127 4.127 26 C -0.141 4.141 27 C -0.154 4.154 28 C -0.144 4.144 29 C -0.127 4.127 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.234 0.766 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.223 0.777 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.050 0.950 48 H 0.138 0.862 49 H 0.134 0.866 50 H 0.131 0.869 51 H 0.132 0.868 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.438 -14.379 6.787 20.187 hybrid contribution 0.352 0.802 1.017 1.342 sum 12.789 -13.577 7.804 20.219 Atomic orbital electron populations 1.69947 1.06025 1.26904 1.50275 1.24988 0.94791 0.99218 0.95150 0.86651 0.79543 0.83053 0.78728 1.20192 1.21360 1.20255 1.21106 0.93077 0.90376 1.51256 0.92385 1.19380 0.93216 0.90186 0.98502 1.20206 0.93311 0.91777 0.86527 0.89555 1.45960 1.16879 1.58236 1.14215 1.20313 0.81526 0.78483 0.90040 1.90626 1.68928 1.44964 1.36302 1.21965 0.90626 1.01346 0.95613 1.61564 1.11579 1.13332 1.37863 1.22281 0.98305 0.86186 1.00856 1.21515 0.94295 1.00513 0.97661 1.21227 0.94656 0.95492 0.99489 1.22239 0.97148 0.81060 0.99196 1.86494 1.37472 1.20747 1.93104 1.21550 0.96634 0.94474 1.01973 1.22068 0.93011 1.00891 0.91063 1.20567 0.96705 0.96542 0.93276 1.21023 0.99106 0.95076 0.97464 1.21040 0.98563 0.96182 0.98269 1.20988 1.01085 1.00058 0.93223 1.21038 0.99966 0.96020 0.97342 1.20899 0.97724 0.95560 0.98498 0.92827 0.94863 0.95803 0.76644 0.87897 0.92434 0.95888 0.88395 0.91092 0.91171 0.91013 0.93463 0.93943 0.77687 0.90669 0.91499 0.90418 0.95010 0.86198 0.86635 0.86881 0.86813 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 13.29 55.43 0.74 -24.83 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.70 8.84 -34.44 -0.30 -14.00 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.58 4.49 -27.88 -0.13 0.46 16 10 C 0.19 3.76 2.12 -69.08 -0.15 3.62 16 11 H 0.09 1.93 7.44 -51.93 -0.39 1.55 16 12 N -0.70 -12.42 4.03 -54.94 -0.22 -12.64 16 13 C 0.51 8.88 7.46 -10.99 -0.08 8.80 16 14 O -0.53 -10.98 13.99 5.56 0.08 -10.91 16 15 C 0.04 0.48 5.45 -4.98 -0.03 0.45 16 16 N -0.52 -7.00 4.40 -236.11 -1.04 -8.04 16 17 C 0.05 0.70 5.11 -3.83 -0.02 0.68 16 18 C -0.10 -1.25 5.25 -26.65 -0.14 -1.39 16 19 C -0.09 -0.91 2.49 -90.50 -0.23 -1.13 16 20 C 0.08 0.69 6.43 37.16 0.24 0.93 16 21 O -0.57 -5.26 13.26 -35.23 -0.47 -5.72 16 22 C -0.11 -1.01 5.38 -26.65 -0.14 -1.15 16 23 C 0.06 0.60 5.46 -3.83 -0.02 0.58 16 24 C -0.07 -1.29 4.91 -104.62 -0.51 -1.80 16 25 C -0.11 -1.90 9.67 -39.59 -0.38 -2.28 16 26 C -0.12 -1.86 10.05 -39.59 -0.40 -2.26 16 27 C -0.14 -1.94 10.05 -39.58 -0.40 -2.34 16 28 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 29 C -0.11 -1.82 9.32 -39.58 -0.37 -2.19 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.03 0.87 8.14 -51.92 -0.42 0.45 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.40 6.43 8.60 -40.82 -0.35 6.08 16 34 H 0.10 1.26 7.99 -51.93 -0.41 0.84 16 35 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 36 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.10 1.63 5.78 -51.93 -0.30 1.33 16 38 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.07 0.88 7.91 -51.93 -0.41 0.47 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.38 1.70 9.12 45.56 0.42 2.11 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.75 8.02 -51.93 -0.42 0.33 16 47 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.12 2.03 8.04 -52.49 -0.42 1.61 16 49 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 50 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 51 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 52 H 0.12 1.80 7.72 -52.49 -0.41 1.40 16 LS Contribution 418.18 15.07 6.30 6.30 Total: -1.00 -32.41 418.18 -11.33 -43.74 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.15 Total: 9.85 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -3.55 Total: -13.74 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.52 Total: -45.51 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.39 Total: -16.63 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.41 -11.33 -43.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772080883.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.477 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds