Wall clock time and date at job start Sat Apr 11 2020 08:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47035 * 2 1 4 4 O 1.21279 * 120.00073 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99984 * 179.97438 * 3 2 1 6 6 C 1.46921 * 120.62922 * 0.02562 * 5 3 2 7 7 C 1.53197 * 108.77214 * 233.62441 * 6 5 3 8 8 C 1.53033 * 109.31560 * 305.36413 * 7 6 5 9 9 H 1.09001 * 109.46134 * 301.35178 * 8 7 6 10 10 N 1.46900 * 109.46321 * 181.38525 * 8 7 6 11 11 C 1.46894 * 110.99964 * 85.00281 * 10 8 7 12 12 C 1.50697 * 109.47180 * 180.02562 * 11 10 8 13 13 C 1.38299 * 119.93399 * 269.72573 * 12 11 10 14 14 C 1.38093 * 120.07080 * 179.72621 * 13 12 11 15 15 C 1.38877 * 119.93343 * 0.54188 * 14 13 12 16 16 O 1.35746 * 120.07045 * 179.74810 * 15 14 13 17 17 C 1.34831 * 116.99824 * 174.44476 * 16 15 14 18 18 H 1.08001 * 120.00128 * 5.05510 * 17 16 15 19 19 C 1.38658 * 119.99997 * 185.05635 * 17 16 15 20 20 N 1.31554 * 119.99926 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00017 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46992 * 60.00203 * 21 19 17 23 23 H 1.48496 * 109.46933 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47344 * 300.00072 * 21 19 17 25 25 C 1.38881 * 119.85834 * 359.73272 * 15 14 13 26 26 C 1.38099 * 119.93143 * 359.97438 * 25 15 14 27 27 C 1.53051 * 109.53749 * 61.36494 * 8 7 6 28 28 H 1.08997 * 109.52060 * 58.60137 * 27 8 7 29 29 C 1.52994 * 109.49611 * 178.68761 * 27 8 7 30 30 C 1.46927 * 120.62959 * 180.02562 * 5 3 2 31 31 H 1.08995 * 109.47308 * 59.99208 * 1 2 3 32 32 H 1.08996 * 109.47233 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46629 * 299.99243 * 1 2 3 34 34 H 1.09004 * 109.46629 * 240.00756 * 2 1 3 35 35 H 1.08989 * 109.47551 * 120.00452 * 2 1 3 36 36 H 1.08997 * 109.58959 * 113.84006 * 6 5 3 37 37 H 1.09004 * 109.70611 * 353.47814 * 6 5 3 38 38 H 1.09007 * 109.49756 * 65.31615 * 7 6 5 39 39 H 1.08995 * 109.49650 * 185.41041 * 7 6 5 40 40 H 1.00903 * 110.99891 * 321.04406 * 10 8 7 41 41 H 1.09004 * 109.46781 * 299.99784 * 11 10 8 42 42 H 1.08995 * 109.47278 * 59.99677 * 11 10 8 43 43 H 1.08007 * 119.96250 * 0.02562 * 13 12 11 44 44 H 1.08000 * 120.03364 * 180.27353 * 14 13 12 45 45 H 0.97006 * 120.00057 * 179.97438 * 20 19 17 46 46 H 1.08006 * 120.03285 * 179.97438 * 25 15 14 47 47 H 1.08001 * 119.96627 * 180.02562 * 26 25 15 48 48 H 1.08999 * 109.47167 * 179.84091 * 29 27 8 49 49 H 1.09003 * 109.46931 * 299.83511 * 29 27 8 50 50 H 1.08997 * 109.47589 * 59.83612 * 29 27 8 51 51 H 1.08992 * 109.59098 * 246.16175 * 30 5 3 52 52 H 1.09001 * 109.58753 * 6.44517 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3244 0.5610 0.0005 7 6 5.2961 0.7556 1.1688 8 6 5.9306 2.1450 1.0734 9 1 6.4506 2.2421 0.1204 10 7 6.8878 2.3226 2.1734 11 6 8.2018 1.7676 1.8225 12 6 9.1548 1.9673 2.9727 13 6 9.9217 3.1161 3.0420 14 6 10.7918 3.3045 4.0977 15 6 10.9046 2.3339 5.0845 16 8 11.7627 2.5140 6.1208 17 6 11.7399 1.5897 7.1021 18 1 11.1189 0.7116 7.0026 19 6 12.5135 1.7665 8.2392 20 7 13.2694 2.8363 8.3606 21 14 12.4812 0.4863 9.5992 22 1 12.9315 -0.8215 9.0587 23 1 13.3881 0.9075 10.6970 24 1 11.0979 0.3555 10.1232 25 6 10.1373 1.1788 5.0091 26 6 9.2645 0.9989 3.9540 27 6 4.8392 3.2137 1.1696 28 1 4.3023 3.1022 2.1116 29 6 5.4777 4.6026 1.1070 30 6 3.8624 3.0469 0.0011 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8898 36 1 4.8777 0.5593 -0.9385 37 1 3.7987 -0.3868 0.1166 38 1 4.7550 0.6667 2.1108 39 1 6.0761 -0.0043 1.1236 40 1 6.5382 1.9127 3.0266 41 1 8.1024 0.7023 1.6143 42 1 8.5868 2.2762 0.9387 43 1 9.8365 3.8688 2.2722 44 1 11.3872 4.2039 4.1535 45 1 13.8104 2.9602 9.1563 46 1 10.2230 0.4219 5.7748 47 1 8.6673 0.1010 3.8950 48 1 4.6999 5.3634 1.1728 49 1 6.1727 4.7208 1.9384 50 1 6.0155 4.7133 0.1654 51 1 4.3780 3.2478 -0.9379 52 1 3.0296 3.7407 0.1163 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035876561.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:02:08 Heat of formation + Delta-G solvation = -49.531048 kcal Electronic energy + Delta-G solvation = -29831.295864 eV Core-core repulsion = 25795.727167 eV Total energy + Delta-G solvation = -4035.568696 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.67911 -39.15389 -38.50304 -36.83437 -35.23455 -33.80571 -32.75625 -32.33288 -31.45850 -30.18063 -29.04188 -27.26916 -25.90920 -25.13792 -24.08049 -23.24088 -22.55148 -21.94722 -20.73355 -20.21624 -19.26270 -17.99510 -17.61218 -17.00916 -16.26418 -16.15680 -15.49872 -15.24975 -15.13030 -14.65483 -14.55333 -14.41081 -14.21596 -13.87847 -13.75706 -13.54233 -13.42078 -13.05856 -12.90356 -12.75092 -12.70351 -12.63925 -12.28011 -12.16300 -12.03111 -12.00713 -11.66196 -11.62873 -11.56845 -11.32002 -11.23244 -10.99185 -10.88406 -10.75689 -10.67537 -10.47067 -10.39199 -10.07414 -9.35682 -9.02474 -8.84667 -8.35457 -8.18347 -7.19970 -6.46622 -4.05681 2.21036 2.25972 2.31054 2.62891 3.11125 3.12339 3.15295 3.94790 4.07003 4.11226 4.28710 4.55535 4.58839 4.62305 4.65163 4.68407 4.79837 4.89369 5.01611 5.08093 5.12739 5.19788 5.27128 5.28456 5.32543 5.35757 5.39783 5.43616 5.46718 5.53667 5.54428 5.65689 5.73966 5.74136 5.79567 5.84105 5.89015 5.94436 6.09795 6.15281 6.19860 6.37582 6.41676 6.69254 6.88197 6.99764 7.03491 7.07231 7.24790 7.32308 7.41635 7.45303 7.81661 7.84984 7.98083 8.98776 9.69031 10.71227 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.018531 B = 0.001803 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.605765 B =15528.760832 C =16310.758470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.513 3.487 4 O -0.543 6.543 5 N -0.614 5.614 6 C 0.111 3.889 7 C -0.168 4.168 8 C 0.092 3.908 9 H 0.077 0.923 10 N -0.675 5.675 11 C 0.120 3.880 12 C -0.185 4.185 13 C -0.052 4.052 14 C -0.195 4.195 15 C 0.156 3.844 16 O -0.178 6.178 17 C -0.393 4.393 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.235 4.235 26 C -0.066 4.066 27 C -0.091 4.091 28 H 0.072 0.928 29 C -0.135 4.135 30 C 0.114 3.886 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.342 0.658 41 H 0.026 0.974 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.271 0.729 46 H 0.125 0.875 47 H 0.101 0.899 48 H 0.047 0.953 49 H 0.078 0.922 50 H 0.049 0.951 51 H 0.066 0.934 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.969 -6.405 -17.900 26.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.301 3.699 4 O -0.420 6.420 5 N -0.347 5.347 6 C -0.013 4.013 7 C -0.208 4.208 8 C -0.019 4.019 9 H 0.096 0.904 10 N -0.305 5.305 11 C -0.008 4.008 12 C -0.187 4.187 13 C -0.070 4.070 14 C -0.214 4.214 15 C 0.102 3.898 16 O -0.081 6.081 17 C -0.469 4.469 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.254 4.254 26 C -0.085 4.085 27 C -0.111 4.111 28 H 0.090 0.910 29 C -0.193 4.193 30 C -0.008 4.008 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.161 0.839 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.080 0.920 46 H 0.143 0.857 47 H 0.119 0.881 48 H 0.066 0.934 49 H 0.097 0.903 50 H 0.068 0.932 51 H 0.084 0.916 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.864 -4.989 -17.851 26.447 hybrid contribution -0.012 -1.815 0.855 2.006 sum -18.876 -6.804 -16.996 26.296 Atomic orbital electron populations 1.21538 0.92973 1.01603 1.03380 1.21669 0.98662 0.93955 1.04132 1.20809 0.81631 0.91921 0.75518 1.90693 1.54779 1.46651 1.49847 1.48187 1.05559 1.07511 1.73465 1.21697 0.90967 0.89662 0.98927 1.22716 0.99235 0.99698 0.99103 1.21603 0.92584 0.91932 0.95737 0.90430 1.60649 1.02267 1.62611 1.04983 1.20632 0.87680 0.96294 0.96212 1.19096 1.03093 0.97369 0.99105 1.20456 0.94396 0.95795 0.96396 1.20230 1.04831 0.99934 0.96395 1.19405 0.88705 0.92693 0.89003 1.83979 1.49710 1.47638 1.26758 1.21266 1.28317 1.01371 0.95926 0.89165 1.25288 0.95734 0.97776 0.97703 1.70028 1.25136 1.26076 1.28428 0.85789 0.78632 0.79556 0.79494 1.19531 1.20257 1.19515 1.21112 1.02720 0.99993 1.01619 1.20569 0.97044 0.97287 0.93554 1.21444 0.95049 0.96231 0.98355 0.90955 1.21631 1.00539 0.94217 1.02941 1.21754 0.98018 0.82722 0.98328 0.92015 0.92058 0.91948 0.89017 0.88927 0.91135 0.89666 0.91134 0.90476 0.83915 0.95550 0.91240 0.87093 0.86604 0.91953 0.85713 0.88051 0.93394 0.90310 0.93164 0.91580 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.20 37.16 0.34 -0.57 16 2 C -0.14 -0.88 4.77 -27.88 -0.13 -1.01 16 3 C 0.51 4.94 7.70 -10.98 -0.08 4.85 16 4 O -0.54 -7.34 15.39 5.56 0.09 -7.26 16 5 N -0.61 -5.02 2.97 -172.75 -0.51 -5.53 16 6 C 0.11 0.64 6.34 -3.71 -0.02 0.61 16 7 C -0.17 -1.14 5.33 -26.61 -0.14 -1.28 16 8 C 0.09 0.77 1.89 -67.67 -0.13 0.64 16 9 H 0.08 0.66 7.80 -51.93 -0.40 0.25 16 10 N -0.68 -7.21 5.42 -107.95 -0.59 -7.80 16 11 C 0.12 1.42 5.61 -4.98 -0.03 1.39 16 12 C -0.19 -2.93 5.40 -104.58 -0.56 -3.50 16 13 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 14 C -0.19 -4.05 9.99 -39.40 -0.39 -4.45 16 15 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 16 O -0.18 -5.04 9.76 0.06 0.00 -5.04 16 17 C -0.39 -10.88 9.49 30.89 0.29 -10.59 16 18 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.14 13.67 55.48 0.76 -24.38 16 21 Si 0.94 20.33 29.55 -169.99 -5.02 15.30 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 C -0.24 -4.97 9.17 -39.39 -0.36 -5.33 16 26 C -0.07 -1.13 9.69 -39.61 -0.38 -1.52 16 27 C -0.09 -0.80 2.60 -90.48 -0.23 -1.04 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 C -0.14 -1.25 9.02 37.15 0.34 -0.91 16 30 C 0.11 1.00 5.72 -3.70 -0.02 0.98 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.04 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 34 H 0.09 0.39 7.94 -51.93 -0.41 -0.02 16 35 H 0.09 0.44 7.69 -51.94 -0.40 0.04 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.34 5.95 -51.93 -0.31 0.03 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.50 7.43 -51.93 -0.39 0.12 16 40 H 0.34 3.84 8.47 -39.29 -0.33 3.51 16 41 H 0.03 0.29 7.36 -51.93 -0.38 -0.09 16 42 H 0.07 0.79 8.00 -51.93 -0.42 0.38 16 43 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 44 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 45 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.13 2.65 5.64 -52.48 -0.30 2.36 16 47 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 48 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 0.87 7.57 -51.93 -0.39 0.47 16 50 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 52 H 0.09 0.97 7.00 -51.93 -0.36 0.60 16 LS Contribution 413.55 15.07 6.23 6.23 Total: -1.00 -31.88 413.55 -9.88 -41.77 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.57 Total: 5.27 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -2.27 Total: -18.56 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.34 Total: -37.72 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.88 -9.88 -41.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035876561.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.763 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds