Wall clock time and date at job start Sat Apr 11 2020 08:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00104 * 2 1 4 4 C 1.50705 * 109.47550 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99486 * 0.23649 * 4 3 2 6 6 C 1.38210 * 119.99705 * 180.27326 * 5 4 3 7 7 C 1.38262 * 120.00036 * 359.74875 * 6 5 4 8 8 C 1.38208 * 119.99720 * 359.97438 * 7 6 5 9 9 C 1.38210 * 120.00163 * 180.02562 * 4 3 2 10 10 C 1.50698 * 120.00212 * 359.97438 * 9 4 3 11 11 C 1.50700 * 109.47015 * 84.72871 * 10 9 4 12 12 O 1.21275 * 119.99963 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99646 * 180.02562 * 11 10 9 14 14 C 1.46922 * 120.63542 * 354.22677 * 13 11 10 15 15 C 1.53187 * 108.77798 * 126.41634 * 14 13 11 16 16 C 1.53042 * 109.31295 * 54.63159 * 15 14 13 17 17 H 1.09008 * 109.45755 * 178.62972 * 16 15 14 18 18 N 1.46500 * 109.45719 * 58.65975 * 16 15 14 19 19 C 1.36944 * 119.99896 * 84.97186 * 18 16 15 20 20 H 1.07996 * 119.99776 * 359.97438 * 19 18 16 21 21 C 1.38809 * 119.99504 * 179.97438 * 19 18 16 22 22 N 1.31622 * 119.99554 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00417 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47085 * 89.99836 * 23 21 19 25 25 H 1.48498 * 109.46771 * 329.99753 * 23 21 19 26 26 H 1.48500 * 109.47101 * 210.00298 * 23 21 19 27 27 C 1.53033 * 109.53047 * 298.64347 * 16 15 14 28 28 C 1.46935 * 120.62721 * 174.24998 * 13 11 10 29 29 H 1.09001 * 109.58758 * 113.79849 * 28 13 11 30 30 C 1.53001 * 109.58512 * 353.51364 * 28 13 11 31 31 H 1.09000 * 109.47028 * 299.99505 * 1 2 3 32 32 H 1.08998 * 109.47377 * 59.99775 * 1 2 3 33 33 H 1.09006 * 109.47446 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.47115 * 59.99916 * 3 2 1 35 35 H 1.08996 * 109.47237 * 300.00714 * 3 2 1 36 36 H 1.08002 * 120.00367 * 359.97438 * 5 4 3 37 37 H 1.08002 * 120.00078 * 179.72303 * 6 5 4 38 38 H 1.07999 * 120.00033 * 179.97438 * 7 6 5 39 39 H 1.08003 * 119.99847 * 179.97438 * 8 7 6 40 40 H 1.09006 * 109.47324 * 324.72984 * 10 9 4 41 41 H 1.08994 * 109.47442 * 204.73035 * 10 9 4 42 42 H 1.09000 * 109.58231 * 6.62240 * 14 13 11 43 43 H 1.09008 * 109.70214 * 246.27201 * 14 13 11 44 44 H 1.09006 * 109.49602 * 294.68446 * 15 14 13 45 45 H 1.09002 * 109.52671 * 174.60655 * 15 14 13 46 46 H 0.96995 * 119.99623 * 264.97091 * 18 16 15 47 47 H 0.96999 * 119.99671 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.50032 * 181.30808 * 27 16 15 49 49 H 1.08997 * 109.49820 * 301.40983 * 27 16 15 50 50 H 1.08994 * 109.47020 * 65.75524 * 30 28 13 51 51 H 1.09004 * 109.46845 * 185.75177 * 30 28 13 52 52 H 1.09003 * 109.47345 * 305.75264 * 30 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.1071 -0.0617 -0.0038 6 6 5.4849 -0.1708 0.0025 7 6 6.2686 0.9682 0.0080 8 6 5.6741 2.2159 0.0067 9 6 4.2959 2.3252 0.0013 10 6 3.6478 3.6857 0.0008 11 6 3.3128 4.0830 1.4153 12 8 3.5741 3.3349 2.3333 13 7 2.7219 5.2693 1.6600 14 6 2.5124 6.2390 0.5763 15 6 1.0329 6.6350 0.5480 16 6 0.6174 7.1394 1.9319 17 1 -0.4288 7.4447 1.9081 18 7 1.4516 8.2845 2.3046 19 6 1.1117 9.5438 1.8874 20 1 0.2290 9.6927 1.2833 21 6 1.9019 10.6289 2.2410 22 7 1.5756 11.8392 1.8396 23 14 3.4284 10.3715 3.2866 24 1 4.5969 10.1247 2.4042 25 1 3.2258 9.2016 4.1786 26 1 3.6757 11.5834 4.1083 27 6 0.7986 6.0204 2.9600 28 6 2.2753 5.6177 3.0158 29 1 2.8676 6.4516 3.3926 30 6 2.4460 4.4091 3.9384 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.6886 1.8464 0.8900 35 1 1.6885 1.8464 -0.8899 36 1 3.4950 -0.9515 -0.0074 37 1 5.9494 -1.1459 0.0035 38 1 7.3452 0.8829 0.0133 39 1 6.2863 3.1057 0.0114 40 1 2.7345 3.6529 -0.5934 41 1 4.3346 4.4151 -0.4286 42 1 2.7882 5.7872 -0.3766 43 1 3.1242 7.1240 0.7517 44 1 0.4292 5.7676 0.2806 45 1 0.8810 7.4246 -0.1879 46 1 2.2446 8.1507 2.8469 47 1 2.1276 12.5975 2.0871 48 1 0.4807 6.3728 3.9412 49 1 0.1973 5.1589 2.6698 50 1 3.5064 4.1820 4.0471 51 1 2.0208 4.6356 4.9162 52 1 1.9323 3.5489 3.5091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044772874.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:02:55 Heat of formation + Delta-G solvation = -27.226417 kcal Electronic energy + Delta-G solvation = -31911.993162 eV Core-core repulsion = 27877.391667 eV Total energy + Delta-G solvation = -4034.601495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.72521 -39.54880 -37.80825 -37.48385 -34.35205 -33.72641 -32.34547 -31.98580 -31.69356 -29.74472 -28.18841 -27.33114 -26.85298 -25.64281 -24.29531 -23.16766 -22.55535 -21.78918 -21.05094 -19.86253 -18.33576 -17.79988 -16.92143 -16.84833 -16.75272 -16.06456 -15.99916 -15.46985 -15.16508 -14.85095 -14.60828 -14.43736 -14.25170 -13.85539 -13.75915 -13.54119 -13.38248 -13.14681 -12.98208 -12.75257 -12.64311 -12.40852 -12.22874 -12.18692 -11.95304 -11.76808 -11.67558 -11.35275 -11.09510 -11.07306 -10.96895 -10.95454 -10.79569 -10.53155 -10.29442 -10.09391 -10.08666 -9.64126 -9.07010 -9.01849 -8.80537 -8.63862 -8.31312 -7.35066 -5.84029 -3.19972 1.20553 1.33233 2.71247 3.10333 3.30895 3.34071 3.40435 3.45026 3.69010 4.49911 4.52023 4.62835 4.66689 4.80874 4.93254 4.97733 5.05317 5.07156 5.08552 5.10502 5.18481 5.21070 5.25848 5.30641 5.35387 5.37520 5.43223 5.46323 5.52253 5.56466 5.61473 5.69340 5.83336 5.86409 5.93755 5.97092 6.00764 6.11576 6.26933 6.30606 6.34720 6.42777 6.45525 6.46508 6.56116 6.59044 6.66302 6.87980 6.91827 6.93092 7.60652 7.91990 8.32342 8.35129 9.13040 9.85747 10.05212 11.34264 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.002996 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.717401 B = 9343.907247 C =10129.177703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.103 3.897 4 C -0.073 4.073 5 C -0.097 4.097 6 C -0.124 4.124 7 C -0.120 4.120 8 C -0.106 4.106 9 C -0.055 4.055 10 C -0.110 4.110 11 C 0.514 3.486 12 O -0.531 6.531 13 N -0.602 5.602 14 C 0.111 3.889 15 C -0.149 4.149 16 C 0.180 3.820 17 H 0.060 0.940 18 N -0.746 5.746 19 C -0.243 4.243 20 H 0.091 0.909 21 C 0.007 3.993 22 N -0.933 5.933 23 Si 0.879 3.121 24 H -0.284 1.284 25 H -0.278 1.278 26 H -0.290 1.290 27 C -0.136 4.136 28 C 0.144 3.856 29 H 0.070 0.930 30 C -0.134 4.134 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.079 0.921 46 H 0.360 0.640 47 H 0.260 0.740 48 H 0.075 0.925 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.041 0.959 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.640 -23.503 -5.670 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.026 3.974 4 C -0.073 4.073 5 C -0.115 4.115 6 C -0.142 4.142 7 C -0.138 4.138 8 C -0.124 4.124 9 C -0.056 4.056 10 C -0.150 4.150 11 C 0.302 3.698 12 O -0.408 6.408 13 N -0.336 5.336 14 C -0.012 4.012 15 C -0.190 4.190 16 C 0.070 3.930 17 H 0.078 0.922 18 N -0.390 5.390 19 C -0.373 4.373 20 H 0.109 0.891 21 C -0.189 4.189 22 N -0.580 5.580 23 Si 0.709 3.291 24 H -0.211 1.211 25 H -0.204 1.204 26 H -0.217 1.217 27 C -0.175 4.175 28 C 0.042 3.958 29 H 0.088 0.912 30 C -0.192 4.192 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.148 0.852 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.194 0.806 47 H 0.070 0.930 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.060 0.940 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.758 -23.830 -5.266 24.560 hybrid contribution 0.899 0.492 0.652 1.215 sum 3.658 -23.338 -4.615 24.069 Atomic orbital electron populations 1.22754 0.80678 1.02835 1.00259 1.87819 1.19855 1.27472 1.95505 1.21272 0.90455 0.84948 1.00681 1.19388 0.93609 0.93381 1.00952 1.20918 0.94462 0.97294 0.98846 1.21133 0.93839 0.98425 1.00809 1.21090 0.99713 0.92510 1.00492 1.20915 0.93627 0.97792 1.00096 1.18995 0.93405 0.92794 1.00369 1.20808 1.02653 0.95460 0.96070 1.20360 0.77704 0.81127 0.90621 1.90754 1.52936 1.52393 1.44736 1.48237 1.58891 1.16481 1.10016 1.21764 0.98580 0.92237 0.88600 1.22486 0.94629 1.00317 1.01541 1.20150 0.95480 0.86628 0.90746 0.92245 1.42878 1.29418 1.03552 1.63180 1.19060 1.08985 0.82208 1.27067 0.89137 1.24650 0.98665 0.95210 1.00376 1.69692 1.40181 0.98082 1.50061 0.86648 0.84500 0.77070 0.80866 1.21085 1.20400 1.21655 1.22275 0.95242 0.98901 1.01079 1.21228 0.95316 0.97871 0.81414 0.91203 1.22184 1.03703 0.96325 0.96945 0.93848 0.93925 0.89501 0.91676 0.92106 0.85225 0.86209 0.86178 0.86065 0.88242 0.87895 0.90796 0.90159 0.92988 0.90225 0.80596 0.93018 0.90654 0.91718 0.90576 0.94004 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.26 9.18 -35.23 -0.32 -4.59 16 3 C 0.10 1.13 5.11 36.01 0.18 1.31 16 4 C -0.07 -0.88 5.88 -104.62 -0.62 -1.50 16 5 C -0.10 -1.12 9.38 -39.58 -0.37 -1.49 16 6 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 7 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 8 C -0.11 -1.19 9.68 -39.59 -0.38 -1.58 16 9 C -0.06 -0.65 4.37 -104.63 -0.46 -1.11 16 10 C -0.11 -1.20 3.69 -29.04 -0.11 -1.30 16 11 C 0.51 7.14 7.12 -10.99 -0.08 7.06 16 12 O -0.53 -8.72 11.60 5.56 0.06 -8.65 16 13 N -0.60 -8.59 2.97 -165.23 -0.49 -9.08 16 14 C 0.11 1.53 6.09 -3.72 -0.02 1.51 16 15 C -0.15 -2.19 5.78 -26.61 -0.15 -2.35 16 16 C 0.18 3.11 3.10 -67.89 -0.21 2.90 16 17 H 0.06 1.08 8.08 -51.92 -0.42 0.66 16 18 N -0.75 -16.15 4.11 -53.38 -0.22 -16.37 16 19 C -0.24 -6.41 10.41 -15.06 -0.16 -6.57 16 20 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 21 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 22 N -0.93 -28.34 13.97 55.49 0.78 -27.57 16 23 Si 0.88 21.45 27.73 -169.99 -4.71 16.74 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 C -0.14 -2.04 5.08 -26.63 -0.14 -2.17 16 28 C 0.14 2.22 3.19 -67.61 -0.22 2.01 16 29 H 0.07 1.21 6.64 -51.93 -0.34 0.86 16 30 C -0.13 -1.99 7.62 37.16 0.28 -1.71 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.79 7.76 -51.93 -0.40 0.38 16 35 H 0.06 0.57 7.51 -51.93 -0.39 0.18 16 36 H 0.13 1.42 7.01 -52.49 -0.37 1.05 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.10 0.91 6.64 -51.93 -0.34 0.57 16 41 H 0.10 0.96 7.62 -51.93 -0.40 0.57 16 42 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 43 H 0.08 1.31 7.74 -51.92 -0.40 0.91 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.36 7.87 3.92 -40.82 -0.16 7.71 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.08 1.24 6.55 -51.93 -0.34 0.90 16 51 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 52 H 0.06 0.94 6.95 -51.93 -0.36 0.57 16 LS Contribution 401.40 15.07 6.05 6.05 Total: -1.00 -31.81 401.40 -9.56 -41.36 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -8.48 Total: 8.97 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -2.22 Total: -6.85 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.06 Total: -53.02 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.26 Total: -13.24 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.74 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.81 -9.56 -41.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044772874.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.135 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds