Wall clock time and date at job start Sat Apr 11 2020 08:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.47670 * 2 1 4 4 C 1.53005 * 109.47232 * 119.99771 * 2 1 3 5 5 C 1.53003 * 109.47198 * 184.99853 * 4 2 1 6 6 C 1.50695 * 109.46900 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00340 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00083 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00007 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99603 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46948 * 90.00325 * 10 8 6 12 12 H 1.48503 * 109.46773 * 209.99760 * 10 8 6 13 13 H 1.48501 * 109.47430 * 330.00036 * 10 8 6 14 14 N 1.46904 * 109.47369 * 239.99634 * 2 1 3 15 15 C 1.48498 * 110.99961 * 310.01738 * 14 2 1 16 16 C 1.54270 * 104.73829 * 159.33248 * 15 14 2 17 17 H 1.08999 * 112.65174 * 212.26319 * 16 15 14 18 18 C 1.54390 * 108.77685 * 86.58541 * 16 15 14 19 19 O 1.44383 * 104.92043 * 272.83072 * 18 16 15 20 20 C 1.44376 * 105.26212 * 319.25534 * 19 18 16 21 21 C 1.54390 * 104.91425 * 40.76119 * 20 19 18 22 22 C 1.53007 * 112.68329 * 213.45932 * 21 20 19 23 23 O 1.42896 * 109.46868 * 297.24543 * 22 21 20 24 24 C 1.35903 * 117.00282 * 180.02562 * 23 22 21 25 25 C 1.39145 * 120.47743 * 180.02562 * 24 23 22 26 26 C 1.38533 * 118.37234 * 180.02562 * 25 24 23 27 27 C 1.38254 * 119.22803 * 359.97438 * 26 25 24 28 28 N 1.31854 * 120.88148 * 0.02562 * 27 26 25 29 29 C 1.31841 * 121.78213 * 359.70230 * 28 27 26 30 30 C 1.48508 * 110.99490 * 65.40637 * 14 2 1 31 31 H 1.09004 * 109.47331 * 67.12275 * 1 2 3 32 32 H 1.09001 * 109.47489 * 187.12222 * 1 2 3 33 33 H 1.09003 * 109.47520 * 307.12300 * 1 2 3 34 34 H 1.08996 * 109.46887 * 305.00284 * 4 2 1 35 35 H 1.09006 * 109.46812 * 65.00069 * 4 2 1 36 36 H 1.08996 * 109.47031 * 300.00081 * 5 4 2 37 37 H 1.08990 * 109.46987 * 60.00024 * 5 4 2 38 38 H 0.97001 * 119.99943 * 179.97438 * 9 8 6 39 39 H 1.09005 * 110.38516 * 278.15064 * 15 14 2 40 40 H 1.09002 * 110.38800 * 40.51502 * 15 14 2 41 41 H 1.08995 * 110.35244 * 31.69875 * 18 16 15 42 42 H 1.09003 * 110.34871 * 153.97770 * 18 16 15 43 43 H 1.08998 * 110.35120 * 159.61786 * 20 19 18 44 44 H 1.08998 * 110.35262 * 281.90296 * 20 19 18 45 45 H 1.08994 * 109.46850 * 57.24646 * 22 21 20 46 46 H 1.08998 * 109.47263 * 177.24773 * 22 21 20 47 47 H 1.07999 * 120.81262 * 359.97438 * 25 24 23 48 48 H 1.08003 * 120.38514 * 179.97438 * 26 25 24 49 49 H 1.07995 * 119.55897 * 179.97438 * 27 26 25 50 50 H 1.08001 * 119.66021 * 180.28912 * 29 28 27 51 51 H 1.08993 * 110.38490 * 319.49866 * 30 14 2 52 52 H 1.09006 * 110.38378 * 81.86485 * 30 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0671 -1.3242 2.5438 7 1 3.3687 -1.8045 3.2130 8 6 5.4184 -1.3605 2.8156 9 7 5.8567 -1.9804 3.8894 10 14 6.6264 -0.5290 1.6586 11 1 6.8310 0.8787 2.0847 12 1 7.9237 -1.2508 1.6952 13 1 6.0849 -0.5539 0.2760 14 7 2.0196 -0.6926 -1.1994 15 6 1.3566 -2.0115 -1.3603 16 6 1.5389 -2.3631 -2.8513 17 1 0.7064 -2.9423 -3.2509 18 6 2.8984 -3.0721 -3.0321 19 8 3.8517 -2.0047 -3.2236 20 6 3.1879 -1.0515 -4.0811 21 6 1.7351 -0.9941 -3.5616 22 6 0.7179 -0.7539 -4.6790 23 8 0.9628 0.5190 -5.2805 24 6 0.1411 0.8892 -6.2976 25 6 0.3148 2.1137 -6.9353 26 6 -0.5481 2.4472 -7.9664 27 6 -1.5454 1.5597 -8.3259 28 7 -1.6829 0.4069 -7.7010 29 6 -0.8796 0.0495 -6.7185 30 6 1.6530 0.0521 -2.4308 31 1 -0.3634 0.3995 -0.9468 32 1 -0.3634 -1.0197 0.1274 33 1 -0.3634 0.6202 0.8194 34 1 1.6053 -0.2617 2.1369 35 1 1.7516 -1.7715 1.2056 36 1 3.9994 -1.0728 0.4260 37 1 3.8531 0.4369 1.3573 38 1 6.8074 -2.0063 4.0804 39 1 1.8408 -2.7591 -0.7319 40 1 0.2973 -1.9365 -1.1147 41 1 3.1475 -3.6474 -2.1405 42 1 2.8743 -3.7203 -3.9081 43 1 3.6597 -0.0726 -3.9964 44 1 3.2072 -1.3945 -5.1155 45 1 0.8140 -1.5360 -5.4320 46 1 -0.2895 -0.7715 -4.2633 47 1 1.1026 2.7879 -6.6332 48 1 -0.4430 3.3896 -8.4835 49 1 -2.2213 1.8145 -9.1287 50 1 -1.0205 -0.9051 -6.2334 51 1 0.6394 0.4446 -2.3496 52 1 2.3611 0.8613 -2.6102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172496401.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:02:39 Heat of formation + Delta-G solvation = -55.198810 kcal Electronic energy + Delta-G solvation = -31558.696716 eV Core-core repulsion = 27522.882247 eV Total energy + Delta-G solvation = -4035.814469 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.11198 -41.33854 -39.09176 -38.68495 -35.86088 -34.64857 -33.42212 -32.58558 -32.06825 -31.00484 -30.33836 -27.37177 -27.29441 -26.91049 -25.24626 -24.49987 -23.91557 -22.76232 -22.25457 -20.81714 -20.14338 -19.16785 -18.79632 -18.09525 -17.53740 -17.18894 -17.11008 -16.72832 -16.42566 -16.33146 -15.98348 -15.35440 -15.26218 -15.17495 -15.03368 -14.75557 -14.55934 -14.40428 -14.28948 -13.94367 -13.76691 -13.57768 -13.35174 -13.13821 -13.06511 -12.91865 -12.79160 -12.47746 -12.32962 -12.16904 -12.08111 -11.90585 -11.78180 -11.63463 -11.51899 -11.41379 -11.33174 -11.06418 -10.72884 -10.67775 -10.53901 -10.42966 -9.45056 -9.11617 -8.27715 -6.28758 0.15405 0.30597 1.33242 1.37140 1.53550 1.96163 2.38326 2.83172 2.93128 3.08953 3.22566 3.28526 3.38543 3.55453 3.67958 3.80760 3.86632 3.92922 4.01064 4.04967 4.11028 4.18618 4.23277 4.29387 4.36221 4.40586 4.51106 4.53336 4.60736 4.63544 4.64878 4.67698 4.73532 4.81562 4.87834 4.88453 4.90455 4.95145 5.01341 5.02700 5.04120 5.11557 5.16838 5.24130 5.38050 5.57089 5.58313 5.69532 5.77017 5.96137 6.08246 6.22307 6.25510 6.33405 6.79521 6.97576 7.35754 8.89109 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.002545 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.778634 B =10998.394959 C =11247.780793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.074 3.926 3 H 0.070 0.930 4 C -0.082 4.082 5 C 0.004 3.996 6 C -0.525 4.525 7 H 0.031 0.969 8 C 0.005 3.995 9 N -0.953 5.953 10 Si 0.946 3.054 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.253 1.253 14 N -0.511 5.511 15 C 0.031 3.969 16 C -0.104 4.104 17 H 0.135 0.865 18 C 0.050 3.950 19 O -0.392 6.392 20 C 0.066 3.934 21 C -0.083 4.083 22 C 0.084 3.916 23 O -0.314 6.314 24 C 0.072 3.928 25 C -0.122 4.122 26 C -0.125 4.125 27 C 0.047 3.953 28 N -0.480 5.480 29 C 0.004 3.996 30 C 0.051 3.949 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.023 0.977 37 H 0.002 0.998 38 H 0.264 0.736 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.152 0.848 48 H 0.172 0.828 49 H 0.180 0.820 50 H 0.169 0.831 51 H 0.059 0.941 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.161 6.073 -28.427 33.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.034 4.034 3 H 0.089 0.911 4 C -0.120 4.120 5 C -0.034 4.034 6 C -0.563 4.563 7 H 0.049 0.951 8 C -0.191 4.191 9 N -0.594 5.594 10 Si 0.771 3.229 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.177 1.177 14 N -0.235 5.235 15 C -0.096 4.096 16 C -0.123 4.123 17 H 0.153 0.847 18 C -0.027 4.027 19 O -0.311 6.311 20 C -0.011 4.011 21 C -0.084 4.084 22 C 0.009 3.991 23 O -0.226 6.226 24 C 0.024 3.976 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.111 4.111 28 N -0.190 5.190 29 C -0.154 4.154 30 C -0.077 4.077 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.170 0.830 48 H 0.190 0.810 49 H 0.197 0.803 50 H 0.186 0.814 51 H 0.077 0.923 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.682 5.528 -28.296 33.309 hybrid contribution 0.610 0.618 0.671 1.098 sum -16.071 6.146 -27.625 32.545 Atomic orbital electron populations 1.22380 0.95755 1.02639 1.02632 1.21794 0.93626 0.97660 0.90345 0.91143 1.21318 0.95887 0.99156 0.95614 1.19325 0.94545 0.94763 0.94727 1.21603 0.92474 1.33767 1.08440 0.95086 1.25922 1.00595 0.95867 0.96685 1.70067 1.15086 1.45813 1.28471 0.85703 0.77820 0.78707 0.80708 1.19365 1.21126 1.17673 1.65529 1.53760 1.02907 1.01281 1.23264 0.98428 0.92388 0.95567 1.23303 0.99718 0.94537 0.94769 0.84741 1.23547 0.87151 0.90145 1.01815 1.89212 1.38743 1.33494 1.69605 1.23374 0.90523 0.93686 0.93540 1.22522 0.95690 0.95932 0.94219 1.22745 0.98627 0.83629 0.94087 1.86088 1.53057 1.37578 1.45890 1.20222 0.91864 0.95589 0.89903 1.21314 1.01754 0.95022 0.96712 1.22374 0.94090 1.01880 0.96043 1.23164 0.98414 0.89591 0.99917 1.67541 1.25659 1.18777 1.06974 1.23136 0.93619 1.01171 0.97437 1.23059 1.00020 0.95853 0.88765 0.91274 0.91685 0.91660 0.93223 0.93470 0.95848 0.98013 0.92706 0.91665 0.91306 0.90187 0.90253 0.90111 0.91187 0.89207 0.89696 0.83004 0.81047 0.80318 0.81376 0.92252 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.05 8.24 71.98 0.59 -3.45 16 2 C 0.07 2.30 2.36 44.91 0.11 2.40 16 3 H 0.07 2.26 8.13 -2.39 -0.02 2.24 16 4 C -0.08 -3.27 4.62 30.60 0.14 -3.13 16 5 C 0.00 0.19 3.93 29.85 0.12 0.31 16 6 C -0.52 -31.85 9.66 25.60 0.25 -31.61 16 7 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 8 C 0.01 0.34 5.47 84.66 0.46 0.80 16 9 N -0.95 -62.30 13.96 21.45 0.30 -62.00 16 10 Si 0.95 48.24 27.47 68.60 1.88 50.13 16 11 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 13 H -0.25 -12.66 6.54 99.48 0.65 -12.01 16 14 N -0.51 -15.12 4.66 -857.10 -4.00 -19.12 16 15 C 0.03 0.77 4.91 86.42 0.42 1.19 16 16 C -0.10 -1.91 3.83 -9.04 -0.03 -1.94 16 17 H 0.13 1.46 7.99 -2.39 -0.02 1.44 16 18 C 0.05 1.14 7.05 72.45 0.51 1.65 16 19 O -0.39 -11.95 11.50 -148.98 -1.71 -13.66 16 20 C 0.07 1.49 6.47 72.45 0.47 1.96 16 21 C -0.08 -1.53 0.86 -50.43 -0.04 -1.57 16 22 C 0.08 1.09 3.82 71.98 0.28 1.36 16 23 O -0.31 -5.17 9.78 -92.46 -0.90 -6.08 16 24 C 0.07 1.14 6.71 22.60 0.15 1.29 16 25 C -0.12 -1.62 10.13 22.56 0.23 -1.40 16 26 C -0.12 -1.25 10.11 22.34 0.23 -1.02 16 27 C 0.05 0.58 11.18 84.69 0.95 1.53 16 28 N -0.48 -8.36 10.36 -195.43 -2.02 -10.39 16 29 C 0.00 0.06 10.22 84.81 0.87 0.92 16 30 C 0.05 1.18 5.17 86.42 0.45 1.62 16 31 H 0.07 1.34 6.02 -2.38 -0.01 1.33 16 32 H 0.06 1.44 6.35 -2.39 -0.02 1.42 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.05 1.91 7.05 -2.38 -0.02 1.89 16 36 H 0.02 1.22 6.81 -2.39 -0.02 1.20 16 37 H 0.00 0.08 7.57 -2.39 -0.02 0.06 16 38 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 39 H 0.06 1.95 6.99 -2.38 -0.02 1.93 16 40 H 0.07 1.44 5.41 -2.39 -0.01 1.42 16 41 H 0.08 2.09 7.50 -2.39 -0.02 2.08 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 2.01 7.50 -2.39 -0.02 2.00 16 44 H 0.07 1.31 7.99 -2.39 -0.02 1.29 16 45 H 0.09 0.84 7.67 -2.39 -0.02 0.82 16 46 H 0.08 0.87 7.69 -2.39 -0.02 0.85 16 47 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 48 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 49 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 50 H 0.17 1.94 6.32 -2.91 -0.02 1.93 16 51 H 0.06 1.21 5.74 -2.39 -0.01 1.20 16 52 H 0.07 1.80 7.51 -2.38 -0.02 1.79 16 Total: -1.00 -78.20 398.33 0.53 -77.66 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.85 Total: 12.54 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 6.13 Total: -29.08 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -5.72 Total: -91.50 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -2.62 Total: -19.74 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 1.88 Total: 50.13 kcal Total: -78.20 0.53 -77.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496401.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.464 kcal (2) G-P(sol) polarization free energy of solvation -78.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds