Wall clock time and date at job start Sat Apr 11 2020 08:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46847 * 2 1 4 4 C 1.53000 * 109.47331 * 240.00152 * 2 1 3 5 5 C 1.53008 * 109.47009 * 65.60614 * 4 2 1 6 6 C 1.50697 * 109.46648 * 174.77389 * 5 4 2 7 7 H 1.07992 * 120.00489 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99423 * 180.27490 * 6 5 4 9 9 N 1.31512 * 120.00338 * 359.72860 * 8 6 5 10 10 Si 1.86800 * 119.99659 * 179.72531 * 8 6 5 11 11 H 1.48504 * 109.47076 * 90.00309 * 10 8 6 12 12 H 1.48498 * 109.46882 * 209.99902 * 10 8 6 13 13 H 1.48500 * 109.47330 * 329.99974 * 10 8 6 14 14 N 1.46901 * 109.47171 * 119.99826 * 2 1 3 15 15 C 1.48507 * 110.99657 * 184.66443 * 14 2 1 16 16 C 1.54267 * 104.73384 * 159.34079 * 15 14 2 17 17 H 1.09010 * 112.64723 * 212.26253 * 16 15 14 18 18 C 1.54385 * 108.78369 * 86.58306 * 16 15 14 19 19 O 1.44375 * 104.92276 * 272.83478 * 18 16 15 20 20 C 1.44380 * 105.25870 * 319.24662 * 19 18 16 21 21 C 1.54387 * 104.91286 * 40.76827 * 20 19 18 22 22 C 1.53004 * 112.68371 * 213.45659 * 21 20 19 23 23 O 1.42899 * 109.46829 * 297.24409 * 22 21 20 24 24 C 1.35915 * 116.99944 * 179.97438 * 23 22 21 25 25 C 1.39140 * 120.47223 * 180.02562 * 24 23 22 26 26 C 1.38536 * 118.37456 * 180.02562 * 25 24 23 27 27 C 1.38256 * 119.21936 * 359.97438 * 26 25 24 28 28 N 1.31846 * 120.89052 * 0.02562 * 27 26 25 29 29 C 1.31855 * 121.77745 * 359.69890 * 28 27 26 30 30 C 1.48506 * 111.00089 * 300.05508 * 14 2 1 31 31 H 1.09000 * 109.47578 * 59.99741 * 1 2 3 32 32 H 1.09002 * 109.46847 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47603 * 299.99607 * 1 2 3 34 34 H 1.08999 * 109.46993 * 305.60745 * 4 2 1 35 35 H 1.08999 * 109.47000 * 185.60842 * 4 2 1 36 36 H 1.09000 * 109.46967 * 54.77343 * 5 4 2 37 37 H 1.09000 * 109.46883 * 294.77571 * 5 4 2 38 38 H 0.97001 * 120.00265 * 180.02562 * 9 8 6 39 39 H 1.09001 * 110.38516 * 278.15093 * 15 14 2 40 40 H 1.09001 * 110.38800 * 40.52324 * 15 14 2 41 41 H 1.09002 * 110.34983 * 31.69346 * 18 16 15 42 42 H 1.08998 * 110.35384 * 153.97011 * 18 16 15 43 43 H 1.09001 * 110.35315 * 159.61894 * 20 19 18 44 44 H 1.08999 * 110.35517 * 281.90532 * 20 19 18 45 45 H 1.09001 * 109.46683 * 57.24282 * 22 21 20 46 46 H 1.08999 * 109.47468 * 177.24029 * 22 21 20 47 47 H 1.08002 * 120.81404 * 359.97339 * 25 24 23 48 48 H 1.07992 * 120.39169 * 179.97438 * 26 25 24 49 49 H 1.07997 * 119.55817 * 179.97438 * 27 26 25 50 50 H 1.07991 * 119.66025 * 180.29396 * 29 28 27 51 51 H 1.08994 * 110.38524 * 319.49938 * 30 14 2 52 52 H 1.09004 * 110.37577 * 81.86465 * 30 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6483 0.0769 -2.4945 6 6 2.2592 -0.5636 -3.7142 7 1 2.8657 -1.4512 -3.6116 8 6 2.0480 -0.0132 -4.9607 9 7 1.3090 1.0675 -5.0857 10 14 2.8115 -0.8026 -6.4717 11 1 1.8743 -1.8095 -7.0312 12 1 3.0830 0.2417 -7.4920 13 1 4.0843 -1.4676 -6.0932 14 7 2.0196 -0.6925 1.1995 15 6 3.4999 -0.6153 1.2914 16 6 3.8150 -0.8804 2.7781 17 1 4.6981 -0.3421 3.1224 18 6 3.9230 -2.4045 2.9993 19 8 2.5718 -2.8383 3.2648 20 6 2.0069 -1.8207 4.1191 21 6 2.5165 -0.4849 3.5364 22 6 2.7575 0.5749 4.6133 23 8 1.5225 0.8838 5.2624 24 6 1.5616 1.8139 6.2526 25 6 0.4012 2.1692 6.9332 26 6 0.4908 3.1224 7.9345 27 6 1.7205 3.6847 8.2229 28 7 2.8015 3.3257 7.5587 29 6 2.7598 2.4186 6.6027 30 6 1.5424 -0.0198 2.4344 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.5970 -1.7158 -1.3009 35 1 3.1254 -0.8090 -1.2004 36 1 2.0129 1.0998 -2.4000 37 1 0.5629 0.0857 -2.5938 38 1 1.1601 1.4544 -5.9627 39 1 3.9595 -1.3789 0.6639 40 1 3.8473 0.3760 1.0005 41 1 4.3081 -2.8912 2.1032 42 1 4.5648 -2.6191 3.8537 43 1 0.9181 -1.8583 4.0847 44 1 2.3592 -1.9467 5.1429 45 1 3.4677 0.1927 5.3466 46 1 3.1611 1.4763 4.1522 47 1 -0.5464 1.7136 6.6864 48 1 -0.3894 3.4228 8.4833 49 1 1.7966 4.4286 9.0020 50 1 3.6671 2.1468 6.0840 51 1 1.5886 1.0630 2.3191 52 1 0.5255 -0.3344 2.6692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172496405.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:02:48 Heat of formation + Delta-G solvation = -43.115509 kcal Electronic energy + Delta-G solvation = -30921.533932 eV Core-core repulsion = 26886.243434 eV Total energy + Delta-G solvation = -4035.290498 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.29599 -40.61608 -38.41058 -37.38043 -34.61381 -33.06060 -32.65155 -31.68295 -30.69448 -30.34679 -28.46583 -26.77611 -26.29588 -24.85700 -24.12133 -23.89251 -23.30640 -21.57307 -21.01390 -19.72482 -19.16475 -18.59045 -17.34462 -17.01069 -16.49224 -16.36301 -16.22234 -15.78476 -15.31413 -15.15676 -14.85723 -14.45238 -14.26099 -14.06820 -13.95627 -13.70360 -13.49767 -13.41555 -13.14647 -12.73829 -12.62249 -12.38845 -12.13522 -11.99548 -11.70759 -11.60025 -11.32497 -11.24888 -11.14547 -11.03247 -10.96093 -10.74505 -10.69023 -10.51391 -10.20069 -10.13308 -9.85704 -9.73903 -9.58577 -9.27197 -9.00416 -8.87069 -8.32215 -8.17103 -5.98132 -3.99793 0.69242 0.88030 2.56413 3.33029 3.39091 3.39163 3.42494 3.74410 4.04791 4.06389 4.17028 4.22835 4.25169 4.44162 4.48256 4.55858 4.60230 4.71176 4.71935 4.83822 4.99454 5.03592 5.10061 5.12716 5.24953 5.37591 5.43566 5.48449 5.52828 5.54628 5.60912 5.67936 5.68922 5.69190 5.70905 5.80262 5.89547 5.95095 5.99808 6.09663 6.29937 6.42618 6.64116 6.72378 6.73680 6.76415 6.81417 7.05499 7.22285 7.42758 7.53684 7.71016 7.86619 8.02566 8.46361 9.07434 9.63924 11.13200 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.002188 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.290011 B =12794.688302 C =13721.389727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 H 0.036 0.964 4 C -0.099 4.099 5 C 0.023 3.977 6 C -0.517 4.517 7 H 0.054 0.946 8 C 0.055 3.945 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.494 5.494 15 C 0.042 3.958 16 C -0.118 4.118 17 H 0.097 0.903 18 C 0.058 3.942 19 O -0.354 6.354 20 C 0.070 3.930 21 C -0.096 4.096 22 C 0.080 3.920 23 O -0.301 6.301 24 C 0.085 3.915 25 C -0.109 4.109 26 C -0.131 4.131 27 C 0.056 3.944 28 N -0.451 5.451 29 C 0.015 3.985 30 C 0.054 3.946 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.011 0.989 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.090 0.910 40 H 0.045 0.955 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.144 0.856 48 H 0.142 0.858 49 H 0.157 0.843 50 H 0.157 0.843 51 H 0.041 0.959 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.642 1.204 28.337 28.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.036 4.036 3 H 0.054 0.946 4 C -0.137 4.137 5 C -0.014 4.014 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.218 5.218 15 C -0.086 4.086 16 C -0.137 4.137 17 H 0.116 0.884 18 C -0.019 4.019 19 O -0.271 6.271 20 C -0.007 4.007 21 C -0.097 4.097 22 C 0.005 3.995 23 O -0.213 6.213 24 C 0.037 3.963 25 C -0.136 4.136 26 C -0.151 4.151 27 C -0.102 4.102 28 N -0.160 5.160 29 C -0.143 4.143 30 C -0.074 4.074 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.030 0.970 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.115 0.885 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.162 0.838 48 H 0.160 0.840 49 H 0.175 0.825 50 H 0.174 0.826 51 H 0.060 0.940 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.898 0.828 28.163 28.239 hybrid contribution 0.177 0.526 -1.048 1.186 sum 2.076 1.353 27.115 27.228 Atomic orbital electron populations 1.21842 0.94552 1.02207 1.01205 1.22003 0.95796 0.95390 0.90377 0.94614 1.21662 0.99325 0.99487 0.93183 1.19121 0.96900 0.94817 0.90602 1.21257 1.31074 1.11467 0.91763 0.92748 1.25026 0.95411 0.95021 0.99079 1.69962 1.39030 1.21014 1.23589 0.86612 0.79674 0.78991 0.82832 1.20662 1.21300 1.19919 1.65501 1.05294 1.49805 1.01205 1.23109 0.90484 1.01083 0.93932 1.23318 0.96348 0.97707 0.96357 0.88438 1.23380 0.85233 0.92331 1.00952 1.89198 1.25568 1.43852 1.68530 1.23278 0.99760 0.84884 0.92787 1.22658 0.96976 0.95527 0.94513 1.22733 0.84758 0.98143 0.93902 1.86108 1.34117 1.54554 1.46518 1.20084 0.95356 0.90885 0.90013 1.20997 0.97642 0.98766 0.96160 1.22047 0.99689 0.96176 0.97193 1.22681 0.88068 1.00024 0.99400 1.67533 1.31995 1.11162 1.05321 1.22939 0.96838 0.96596 0.97961 1.22998 0.98461 0.96577 0.89343 0.91199 0.92133 0.94075 0.92616 0.93499 0.97050 0.96277 0.93079 0.89208 0.93660 0.88502 0.92850 0.88665 0.92927 0.91184 0.91142 0.83849 0.84011 0.82528 0.82625 0.94043 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.81 37.16 0.33 -2.02 16 2 C 0.07 1.26 1.90 -67.71 -0.13 1.13 16 3 H 0.04 0.65 7.97 -51.93 -0.41 0.24 16 4 C -0.10 -2.06 4.68 -26.73 -0.13 -2.19 16 5 C 0.02 0.60 4.61 -27.88 -0.13 0.47 16 6 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 7 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 10 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 N -0.49 -7.33 5.05 -222.27 -1.12 -8.45 16 15 C 0.04 0.54 4.95 -2.27 -0.01 0.53 16 16 C -0.12 -1.16 3.83 -87.91 -0.34 -1.49 16 17 H 0.10 0.73 7.99 -51.92 -0.41 0.31 16 18 C 0.06 0.59 7.05 37.88 0.27 0.86 16 19 O -0.35 -4.58 11.50 -35.23 -0.41 -4.99 16 20 C 0.07 0.74 6.47 37.88 0.25 0.98 16 21 C -0.10 -0.95 0.86 -151.80 -0.13 -1.08 16 22 C 0.08 0.65 3.82 37.16 0.14 0.79 16 23 O -0.30 -2.82 9.78 -19.47 -0.19 -3.01 16 24 C 0.08 0.77 6.71 -39.07 -0.26 0.51 16 25 C -0.11 -0.85 10.13 -39.14 -0.40 -1.25 16 26 C -0.13 -0.85 10.11 -39.46 -0.40 -1.25 16 27 C 0.06 0.43 11.18 -17.54 -0.20 0.23 16 28 N -0.45 -4.50 10.36 -13.13 -0.14 -4.63 16 29 C 0.01 0.13 10.22 -17.37 -0.18 -0.04 16 30 C 0.05 0.68 4.17 -2.28 -0.01 0.67 16 31 H 0.07 1.28 6.70 -51.93 -0.35 0.93 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.60 6.93 -51.93 -0.36 0.24 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 0.97 6.80 -51.93 -0.35 0.61 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.02 0.52 6.84 -51.93 -0.36 0.16 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 39 H 0.09 1.22 6.91 -51.93 -0.36 0.86 16 40 H 0.05 0.60 7.90 -51.93 -0.41 0.19 16 41 H 0.10 1.00 7.50 -51.93 -0.39 0.61 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.10 1.03 7.50 -51.93 -0.39 0.64 16 44 H 0.05 0.48 7.99 -51.93 -0.41 0.06 16 45 H 0.07 0.45 7.67 -51.93 -0.40 0.05 16 46 H 0.07 0.54 7.69 -51.93 -0.40 0.14 16 47 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 48 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 49 H 0.16 0.78 8.06 -52.49 -0.42 0.35 16 50 H 0.16 1.16 6.32 -52.49 -0.33 0.82 16 51 H 0.04 0.53 7.84 -51.93 -0.41 0.13 16 52 H 0.09 1.10 7.01 -51.93 -0.36 0.73 16 LS Contribution 405.24 15.07 6.11 6.11 Total: -1.00 -32.87 405.24 -10.37 -43.24 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -8.61 Total: -2.04 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.73 Total: -16.71 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.52 Total: -39.42 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.60 Total: -8.00 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.87 -10.37 -43.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496405.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.128 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds