Wall clock time and date at job start Sat Apr 11 2020 08:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46847 * 2 1 4 4 C 1.53000 * 109.47331 * 240.00152 * 2 1 3 5 5 C 1.53008 * 109.47009 * 65.60614 * 4 2 1 6 6 C 1.50697 * 109.46648 * 174.77389 * 5 4 2 7 7 H 1.07992 * 120.00489 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99423 * 180.27490 * 6 5 4 9 9 N 1.31512 * 120.00338 * 359.72860 * 8 6 5 10 10 Si 1.86800 * 119.99659 * 179.72531 * 8 6 5 11 11 H 1.48504 * 109.47076 * 90.00309 * 10 8 6 12 12 H 1.48498 * 109.46882 * 209.99902 * 10 8 6 13 13 H 1.48500 * 109.47330 * 329.99974 * 10 8 6 14 14 N 1.46901 * 109.47171 * 119.99826 * 2 1 3 15 15 C 1.48507 * 110.99657 * 184.66443 * 14 2 1 16 16 C 1.54267 * 104.73384 * 159.34079 * 15 14 2 17 17 H 1.09010 * 112.64723 * 212.26253 * 16 15 14 18 18 C 1.54385 * 108.78369 * 86.58306 * 16 15 14 19 19 O 1.44375 * 104.92276 * 272.83478 * 18 16 15 20 20 C 1.44380 * 105.25870 * 319.24662 * 19 18 16 21 21 C 1.54387 * 104.91286 * 40.76827 * 20 19 18 22 22 C 1.53004 * 112.68371 * 213.45659 * 21 20 19 23 23 O 1.42899 * 109.46829 * 297.24409 * 22 21 20 24 24 C 1.35915 * 116.99944 * 179.97438 * 23 22 21 25 25 C 1.39140 * 120.47223 * 180.02562 * 24 23 22 26 26 C 1.38536 * 118.37456 * 180.02562 * 25 24 23 27 27 C 1.38256 * 119.21936 * 359.97438 * 26 25 24 28 28 N 1.31846 * 120.89052 * 0.02562 * 27 26 25 29 29 C 1.31855 * 121.77745 * 359.69890 * 28 27 26 30 30 C 1.48506 * 111.00089 * 300.05508 * 14 2 1 31 31 H 1.09000 * 109.47578 * 59.99741 * 1 2 3 32 32 H 1.09002 * 109.46847 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47603 * 299.99607 * 1 2 3 34 34 H 1.08999 * 109.46993 * 305.60745 * 4 2 1 35 35 H 1.08999 * 109.47000 * 185.60842 * 4 2 1 36 36 H 1.09000 * 109.46967 * 54.77343 * 5 4 2 37 37 H 1.09000 * 109.46883 * 294.77571 * 5 4 2 38 38 H 0.97001 * 120.00265 * 180.02562 * 9 8 6 39 39 H 1.09001 * 110.38516 * 278.15093 * 15 14 2 40 40 H 1.09001 * 110.38800 * 40.52324 * 15 14 2 41 41 H 1.09002 * 110.34983 * 31.69346 * 18 16 15 42 42 H 1.08998 * 110.35384 * 153.97011 * 18 16 15 43 43 H 1.09001 * 110.35315 * 159.61894 * 20 19 18 44 44 H 1.08999 * 110.35517 * 281.90532 * 20 19 18 45 45 H 1.09001 * 109.46683 * 57.24282 * 22 21 20 46 46 H 1.08999 * 109.47468 * 177.24029 * 22 21 20 47 47 H 1.08002 * 120.81404 * 359.97339 * 25 24 23 48 48 H 1.07992 * 120.39169 * 179.97438 * 26 25 24 49 49 H 1.07997 * 119.55817 * 179.97438 * 27 26 25 50 50 H 1.07991 * 119.66025 * 180.29396 * 29 28 27 51 51 H 1.08994 * 110.38524 * 319.49938 * 30 14 2 52 52 H 1.09004 * 110.37577 * 81.86465 * 30 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6483 0.0769 -2.4945 6 6 2.2592 -0.5636 -3.7142 7 1 2.8657 -1.4512 -3.6116 8 6 2.0480 -0.0132 -4.9607 9 7 1.3090 1.0675 -5.0857 10 14 2.8115 -0.8026 -6.4717 11 1 1.8743 -1.8095 -7.0312 12 1 3.0830 0.2417 -7.4920 13 1 4.0843 -1.4676 -6.0932 14 7 2.0196 -0.6925 1.1995 15 6 3.4999 -0.6153 1.2914 16 6 3.8150 -0.8804 2.7781 17 1 4.6981 -0.3421 3.1224 18 6 3.9230 -2.4045 2.9993 19 8 2.5718 -2.8383 3.2648 20 6 2.0069 -1.8207 4.1191 21 6 2.5165 -0.4849 3.5364 22 6 2.7575 0.5749 4.6133 23 8 1.5225 0.8838 5.2624 24 6 1.5616 1.8139 6.2526 25 6 0.4012 2.1692 6.9332 26 6 0.4908 3.1224 7.9345 27 6 1.7205 3.6847 8.2229 28 7 2.8015 3.3257 7.5587 29 6 2.7598 2.4186 6.6027 30 6 1.5424 -0.0198 2.4344 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.5970 -1.7158 -1.3009 35 1 3.1254 -0.8090 -1.2004 36 1 2.0129 1.0998 -2.4000 37 1 0.5629 0.0857 -2.5938 38 1 1.1601 1.4544 -5.9627 39 1 3.9595 -1.3789 0.6639 40 1 3.8473 0.3760 1.0005 41 1 4.3081 -2.8912 2.1032 42 1 4.5648 -2.6191 3.8537 43 1 0.9181 -1.8583 4.0847 44 1 2.3592 -1.9467 5.1429 45 1 3.4677 0.1927 5.3466 46 1 3.1611 1.4763 4.1522 47 1 -0.5464 1.7136 6.6864 48 1 -0.3894 3.4228 8.4833 49 1 1.7966 4.4286 9.0020 50 1 3.6671 2.1468 6.0840 51 1 1.5886 1.0630 2.3191 52 1 0.5255 -0.3344 2.6692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172496405.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:02:47 Heat of formation + Delta-G solvation = -64.660501 kcal Electronic energy + Delta-G solvation = -30922.468193 eV Core-core repulsion = 26886.243434 eV Total energy + Delta-G solvation = -4036.224759 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.07535 -41.32457 -39.06905 -38.57913 -36.07694 -34.67643 -33.46639 -32.59757 -32.06594 -30.99201 -29.96198 -27.81775 -27.28801 -26.36917 -25.27953 -24.54536 -23.97455 -23.06920 -22.13510 -20.87461 -20.36270 -19.19980 -18.57949 -17.96300 -17.56567 -17.14837 -17.13817 -16.80004 -16.48985 -16.26601 -16.00494 -15.73879 -15.35876 -14.92032 -14.83718 -14.69567 -14.54865 -14.38180 -14.13054 -14.06342 -13.85476 -13.47273 -13.28842 -13.14260 -12.96352 -12.91525 -12.67825 -12.60697 -12.41911 -12.32686 -12.13097 -12.02271 -11.88319 -11.73589 -11.59704 -11.47331 -11.29768 -11.01977 -10.68443 -10.54974 -10.52142 -10.43991 -9.46504 -9.37743 -8.20668 -6.31283 0.14390 0.29943 1.38522 1.40006 1.51006 1.94339 2.39823 2.82157 2.86285 3.12175 3.17688 3.24061 3.34753 3.54023 3.66946 3.79156 3.85239 3.94359 4.02671 4.05844 4.09203 4.10707 4.16422 4.28876 4.37165 4.44569 4.49288 4.50767 4.61922 4.64096 4.68261 4.73863 4.79868 4.81893 4.85322 4.91129 4.92460 4.94400 4.97906 5.00542 5.01131 5.05224 5.15987 5.19446 5.34144 5.51096 5.57310 5.74816 5.85054 5.91353 5.99692 6.08365 6.20864 6.27938 6.85356 6.96676 7.37488 8.91010 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.002188 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.290011 B =12794.688302 C =13721.389727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.082 3.918 3 H 0.026 0.974 4 C -0.083 4.083 5 C 0.031 3.969 6 C -0.541 4.541 7 H 0.057 0.943 8 C -0.001 4.001 9 N -0.932 5.932 10 Si 0.964 3.036 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.264 1.264 14 N -0.503 5.503 15 C 0.035 3.965 16 C -0.107 4.107 17 H 0.130 0.870 18 C 0.055 3.945 19 O -0.385 6.385 20 C 0.070 3.930 21 C -0.085 4.085 22 C 0.082 3.918 23 O -0.312 6.312 24 C 0.071 3.929 25 C -0.120 4.120 26 C -0.124 4.124 27 C 0.047 3.953 28 N -0.481 5.481 29 C 0.002 3.998 30 C 0.054 3.946 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.048 0.952 36 H -0.014 1.014 37 H -0.003 1.003 38 H 0.263 0.737 39 H 0.079 0.921 40 H 0.041 0.959 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.076 0.924 47 H 0.155 0.845 48 H 0.173 0.827 49 H 0.180 0.820 50 H 0.167 0.833 51 H 0.038 0.962 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 0.893 30.191 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.026 4.026 3 H 0.044 0.956 4 C -0.121 4.121 5 C -0.007 4.007 6 C -0.579 4.579 7 H 0.075 0.925 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.188 1.188 14 N -0.227 5.227 15 C -0.093 4.093 16 C -0.126 4.126 17 H 0.148 0.852 18 C -0.022 4.022 19 O -0.304 6.304 20 C -0.007 4.007 21 C -0.086 4.086 22 C 0.007 3.993 23 O -0.225 6.225 24 C 0.023 3.977 25 C -0.147 4.147 26 C -0.144 4.144 27 C -0.111 4.111 28 N -0.191 5.191 29 C -0.155 4.155 30 C -0.074 4.074 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.004 0.996 37 H 0.015 0.985 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.112 0.888 46 H 0.094 0.906 47 H 0.172 0.828 48 H 0.191 0.809 49 H 0.197 0.803 50 H 0.184 0.816 51 H 0.056 0.944 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.836 0.507 30.034 30.172 hybrid contribution -0.172 0.657 -1.577 1.717 sum 2.664 1.164 28.457 28.605 Atomic orbital electron populations 1.21750 0.94152 1.02021 1.01204 1.21718 0.96068 0.94446 0.90378 0.95633 1.21398 0.99318 0.98458 0.92904 1.18976 0.95188 0.94026 0.92485 1.21682 1.31403 1.11796 0.93062 0.92496 1.25976 0.95791 0.95513 1.02596 1.70094 1.40181 1.22398 1.24602 0.85465 0.79090 0.78152 0.78456 1.19810 1.20643 1.18778 1.65425 1.06758 1.49621 1.00927 1.23190 0.89107 1.00527 0.96454 1.23319 0.97437 0.98075 0.93728 0.85210 1.23522 0.84568 0.92195 1.01906 1.89165 1.27044 1.44970 1.69225 1.23341 0.99376 0.84548 0.93447 1.22557 0.96084 0.95854 0.94135 1.22749 0.84902 0.97774 0.93866 1.86078 1.34709 1.54866 1.46834 1.20225 0.95894 0.91224 0.90319 1.21326 0.97861 0.99098 0.96368 1.22386 1.00420 0.95018 0.96526 1.23177 0.88064 1.00312 0.99543 1.67541 1.33323 1.11993 1.06197 1.23121 0.97408 0.96785 0.98207 1.23016 0.99080 0.96169 0.89114 0.93439 0.92360 0.91753 0.93396 0.93361 0.99552 0.98470 0.92800 0.90232 0.94101 0.89184 0.90067 0.89538 0.90960 0.88825 0.90623 0.82775 0.80919 0.80289 0.81570 0.94387 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 8.81 71.98 0.63 -3.97 16 2 C 0.08 2.95 1.90 44.91 0.09 3.04 16 3 H 0.03 0.97 7.97 -2.39 -0.02 0.95 16 4 C -0.08 -3.58 4.68 30.60 0.14 -3.44 16 5 C 0.03 1.66 4.61 29.85 0.14 1.80 16 6 C -0.54 -31.58 9.11 25.60 0.23 -31.35 16 7 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 8 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 9 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 10 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 14 N -0.50 -14.92 5.05 -857.11 -4.33 -19.24 16 15 C 0.04 0.89 4.95 86.42 0.43 1.32 16 16 C -0.11 -1.86 3.83 -9.04 -0.03 -1.89 16 17 H 0.13 1.46 7.99 -2.38 -0.02 1.45 16 18 C 0.05 1.00 7.05 72.45 0.51 1.51 16 19 O -0.39 -9.49 11.50 -148.98 -1.71 -11.20 16 20 C 0.07 1.35 6.47 72.45 0.47 1.81 16 21 C -0.09 -1.53 0.86 -50.43 -0.04 -1.58 16 22 C 0.08 1.14 3.82 71.98 0.28 1.41 16 23 O -0.31 -5.34 9.78 -92.59 -0.91 -6.25 16 24 C 0.07 1.19 6.71 22.60 0.15 1.34 16 25 C -0.12 -1.67 10.13 22.56 0.23 -1.44 16 26 C -0.12 -1.33 10.11 22.35 0.23 -1.10 16 27 C 0.05 0.63 11.18 84.69 0.95 1.57 16 28 N -0.48 -8.96 10.36 -195.44 -2.02 -10.99 16 29 C 0.00 0.03 10.22 84.80 0.87 0.90 16 30 C 0.05 1.31 4.17 86.42 0.36 1.67 16 31 H 0.05 1.82 6.70 -2.39 -0.02 1.81 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 1.88 6.93 -2.38 -0.02 1.86 16 34 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.05 2.04 6.80 -2.39 -0.02 2.02 16 36 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 37 H 0.00 -0.18 6.84 -2.39 -0.02 -0.19 16 38 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.08 2.16 6.91 -2.39 -0.02 2.15 16 40 H 0.04 1.07 7.90 -2.39 -0.02 1.05 16 41 H 0.09 1.75 7.50 -2.39 -0.02 1.73 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.09 1.80 7.50 -2.39 -0.02 1.78 16 44 H 0.07 1.12 7.99 -2.39 -0.02 1.10 16 45 H 0.09 0.89 7.67 -2.39 -0.02 0.87 16 46 H 0.08 0.99 7.69 -2.39 -0.02 0.97 16 47 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 48 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 49 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 50 H 0.17 2.19 6.32 -2.92 -0.02 2.17 16 51 H 0.04 0.95 7.84 -2.39 -0.02 0.93 16 52 H 0.08 2.03 7.01 -2.39 -0.02 2.01 16 Total: -1.00 -72.69 405.24 0.32 -72.37 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.90 Total: 13.49 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 6.08 Total: -28.00 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -6.07 Total: -87.49 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -2.62 Total: -17.44 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -72.69 0.32 -72.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496405.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.709 kcal (2) G-P(sol) polarization free energy of solvation -72.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds