Wall clock time and date at job start Sat Apr 11 2020 08:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47043 * 2 1 4 4 C 1.52998 * 109.47088 * 240.00217 * 2 1 3 5 5 C 1.53005 * 109.47187 * 65.65862 * 4 2 1 6 6 C 1.50698 * 109.47025 * 174.83183 * 5 4 2 7 7 H 1.07996 * 120.00060 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99844 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99982 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00171 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46884 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47040 * 119.99770 * 10 8 6 13 13 H 1.48498 * 109.47286 * 240.00074 * 10 8 6 14 14 N 1.46899 * 109.46961 * 120.00221 * 2 1 3 15 15 C 1.48515 * 110.99569 * 181.22849 * 14 2 1 16 16 C 1.54263 * 104.73642 * 159.33271 * 15 14 2 17 17 H 1.09001 * 112.13728 * 213.24843 * 16 15 14 18 18 C 1.54396 * 109.35452 * 86.82989 * 16 15 14 19 19 O 1.44383 * 104.92196 * 272.61220 * 18 16 15 20 20 C 1.45419 * 105.74678 * 319.67474 * 19 18 16 21 21 C 1.54396 * 104.41145 * 39.87124 * 20 19 18 22 22 C 1.53000 * 112.67992 * 213.96981 * 21 20 19 23 23 O 1.42903 * 109.47145 * 297.48071 * 22 21 20 24 24 C 1.35675 * 116.99935 * 179.97438 * 23 22 21 25 25 C 1.38920 * 119.68723 * 179.72625 * 24 23 22 26 26 C 1.38370 * 119.11473 * 180.26446 * 25 24 23 27 27 C 1.38831 * 118.48609 * 0.02562 * 26 25 24 28 28 C 1.38044 * 119.28654 * 0.02562 * 27 26 25 29 29 N 1.31956 * 120.83736 * 359.97438 * 28 27 26 30 30 C 1.48499 * 111.00255 * 296.61994 * 14 2 1 31 31 H 1.09000 * 109.47043 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46926 * 299.99716 * 1 2 3 33 33 H 1.09002 * 109.47229 * 59.99419 * 1 2 3 34 34 H 1.08994 * 109.47309 * 185.66065 * 4 2 1 35 35 H 1.08999 * 109.47150 * 305.66222 * 4 2 1 36 36 H 1.09003 * 109.46765 * 294.82977 * 5 4 2 37 37 H 1.09003 * 109.47113 * 54.82841 * 5 4 2 38 38 H 0.97004 * 120.00258 * 179.97438 * 9 8 6 39 39 H 1.08998 * 110.38454 * 278.14935 * 15 14 2 40 40 H 1.08994 * 110.38171 * 40.52124 * 15 14 2 41 41 H 1.09001 * 110.34734 * 31.47230 * 18 16 15 42 42 H 1.09002 * 110.34989 * 153.75109 * 18 16 15 43 43 H 1.08996 * 110.16176 * 281.38896 * 20 19 18 44 44 H 1.08998 * 111.02242 * 158.78097 * 20 19 18 45 45 H 1.09000 * 109.47374 * 177.47727 * 22 21 20 46 46 H 1.09007 * 109.46840 * 57.47989 * 22 21 20 47 47 H 1.08004 * 120.43881 * 0.29526 * 25 24 23 48 48 H 1.07997 * 120.75797 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.35531 * 179.97438 * 27 26 25 50 50 H 1.08001 * 119.57804 * 179.97438 * 28 27 26 51 51 H 1.09005 * 110.38121 * 81.86261 * 30 14 2 52 52 H 1.09001 * 110.38532 * 319.50053 * 30 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6494 0.0776 -2.4945 6 6 2.2591 -0.5638 -3.7143 7 1 2.8649 -1.4519 -3.6117 8 6 2.0444 -0.0160 -4.9612 9 7 1.3071 1.0658 -5.0861 10 14 2.8007 -0.8105 -6.4733 11 1 3.5797 -2.0074 -6.0662 12 1 1.7228 -1.2172 -7.4103 13 1 3.7004 0.1612 -7.1454 14 7 2.0196 -0.6925 1.1994 15 6 3.5039 -0.6866 1.2486 16 6 3.8484 -0.9381 2.7311 17 1 4.7579 -0.4198 3.0351 18 6 3.8980 -2.4586 2.9941 19 8 2.5386 -2.8252 3.3136 20 6 2.0275 -1.7531 4.1526 21 6 2.5930 -0.4648 3.5168 22 6 2.9134 0.6134 4.5540 23 8 1.7121 1.0034 5.2225 24 6 1.8222 1.9580 6.1802 25 6 0.6886 2.3831 6.8614 26 6 0.8136 3.3613 7.8321 27 6 2.0746 3.8828 8.0880 28 6 3.1574 3.4139 7.3716 29 7 3.0067 2.4799 6.4517 30 6 1.6114 0.0263 2.4330 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 3.1252 -0.8098 -1.2001 35 1 1.5962 -1.7154 -1.3014 36 1 0.5640 0.0881 -2.5936 37 1 2.0156 1.0999 -2.4000 38 1 1.1563 1.4514 -5.9634 39 1 3.9077 -1.4838 0.6245 40 1 3.8905 0.2806 0.9278 41 1 4.2333 -2.9869 2.1016 42 1 4.5569 -2.6766 3.8347 43 1 2.3958 -1.8659 5.1723 44 1 0.9377 -1.7341 4.1422 45 1 3.3492 1.4792 4.0554 46 1 3.6223 0.2183 5.2817 47 1 -0.2774 1.9554 6.6367 48 1 -0.0499 3.7112 8.3781 49 1 2.2068 4.6478 8.8389 50 1 4.1404 3.8165 7.5665 51 1 0.5875 -0.2332 2.7024 52 1 1.7069 1.1032 2.2941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500048.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:03:16 Heat of formation + Delta-G solvation = -42.951018 kcal Electronic energy + Delta-G solvation = -30920.437423 eV Core-core repulsion = 26885.154058 eV Total energy + Delta-G solvation = -4035.283365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.14550 -40.53431 -38.12711 -37.27105 -34.51899 -32.86793 -32.83754 -31.77073 -30.64853 -30.35823 -28.42403 -26.50146 -26.21811 -24.79363 -24.05666 -23.82724 -23.29441 -21.50431 -20.98057 -19.63961 -19.06075 -18.66104 -17.30262 -16.47357 -16.41918 -16.31063 -16.15795 -15.72492 -15.25829 -15.10099 -14.87999 -14.42161 -14.21543 -13.96292 -13.86720 -13.58078 -13.55269 -13.37701 -13.14027 -12.64836 -12.36005 -12.31275 -12.01889 -11.84291 -11.63248 -11.51043 -11.18177 -11.14876 -11.07306 -10.97143 -10.91110 -10.68337 -10.63737 -10.47739 -10.33091 -10.13745 -9.98297 -9.68116 -9.55762 -9.24822 -8.96641 -8.86605 -8.30734 -8.11461 -5.96566 -3.98071 0.77750 0.89913 2.62827 3.33086 3.40479 3.42200 3.45097 3.81901 3.92022 4.17878 4.25063 4.32990 4.47065 4.49919 4.65100 4.70871 4.75105 4.76213 4.88057 4.94687 5.06213 5.20717 5.29283 5.31725 5.36227 5.39244 5.50807 5.55909 5.57296 5.58799 5.69196 5.75040 5.76338 5.78350 5.80850 5.89000 5.95461 6.00116 6.04735 6.08736 6.34520 6.46571 6.67322 6.77271 6.79135 6.80027 6.93589 7.09702 7.26149 7.47849 7.48949 7.73353 7.88998 8.04439 8.48323 9.09419 9.65620 11.14824 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.002211 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.388989 B =12660.582274 C =13596.921364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 H 0.035 0.965 4 C -0.100 4.100 5 C 0.023 3.977 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.896 5.896 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 N -0.494 5.494 15 C 0.043 3.957 16 C -0.116 4.116 17 H 0.097 0.903 18 C 0.061 3.939 19 O -0.358 6.358 20 C 0.071 3.929 21 C -0.099 4.099 22 C 0.097 3.903 23 O -0.299 6.299 24 C 0.325 3.675 25 C -0.191 4.191 26 C -0.041 4.041 27 C -0.216 4.216 28 C 0.139 3.861 29 N -0.542 5.542 30 C 0.053 3.947 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.011 0.989 38 H 0.259 0.741 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.096 0.904 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.136 0.864 50 H 0.158 0.842 51 H 0.084 0.916 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.619 3.025 29.742 30.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.036 4.036 3 H 0.053 0.947 4 C -0.138 4.138 5 C -0.015 4.015 6 C -0.554 4.554 7 H 0.073 0.927 8 C -0.146 4.146 9 N -0.536 5.536 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 N -0.218 5.218 15 C -0.085 4.085 16 C -0.135 4.135 17 H 0.115 0.885 18 C -0.016 4.016 19 O -0.277 6.277 20 C -0.006 4.006 21 C -0.100 4.100 22 C 0.021 3.979 23 O -0.206 6.206 24 C 0.147 3.853 25 C -0.212 4.212 26 C -0.067 4.067 27 C -0.236 4.236 28 C -0.016 4.016 29 N -0.266 5.266 30 C -0.075 4.075 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.030 0.970 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.160 0.840 48 H 0.158 0.842 49 H 0.154 0.846 50 H 0.176 0.824 51 H 0.103 0.897 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.691 1.935 28.908 29.097 hybrid contribution 0.358 1.236 -0.403 1.349 sum 3.049 3.171 28.505 28.843 Atomic orbital electron populations 1.21816 0.94543 1.02171 1.01118 1.21997 0.95852 0.95403 0.90352 0.94656 1.21682 0.99335 0.99499 0.93266 1.19126 0.96919 0.94821 0.90610 1.21301 1.30957 1.11458 0.91724 0.92696 1.25029 0.95405 0.95055 0.99085 1.69977 1.39107 1.21064 1.23462 0.86560 0.79059 0.79388 0.83147 1.19736 1.21042 1.21108 1.65493 1.06864 1.48187 1.01302 1.23095 0.90099 1.01287 0.94064 1.23291 0.96855 0.97295 0.96106 0.88521 1.23325 0.84887 0.92967 1.00444 1.89300 1.26292 1.42699 1.69364 1.23456 1.00013 0.84291 0.92842 1.22735 0.96876 0.95489 0.94872 1.22472 0.85004 0.96961 0.93436 1.86248 1.35225 1.51604 1.47509 1.19880 0.89704 0.87788 0.87977 1.21124 0.98658 1.01656 0.99724 1.21431 0.97967 0.92987 0.94300 1.21990 0.93684 1.04094 1.03856 1.22429 0.99312 0.90557 0.89349 1.67363 1.25013 1.14013 1.20236 1.23023 0.98647 0.96117 0.89683 0.92151 0.94100 0.91277 0.93465 0.92618 0.96250 0.97048 0.93150 0.89258 0.93660 0.88563 0.92903 0.92882 0.88605 0.91072 0.91133 0.83980 0.84161 0.84585 0.82442 0.89733 0.94104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.89 37.16 0.33 -2.07 16 2 C 0.07 1.29 1.90 -67.71 -0.13 1.17 16 3 H 0.04 0.67 7.98 -51.93 -0.41 0.25 16 4 C -0.10 -2.13 4.62 -26.73 -0.12 -2.25 16 5 C 0.02 0.59 4.61 -27.88 -0.13 0.47 16 6 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 7 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 8 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 N -0.49 -7.73 5.10 -222.27 -1.13 -8.86 16 15 C 0.04 0.59 4.83 -2.27 -0.01 0.58 16 16 C -0.12 -1.29 3.81 -87.91 -0.33 -1.62 16 17 H 0.10 0.88 7.96 -51.93 -0.41 0.47 16 18 C 0.06 0.68 7.09 37.89 0.27 0.95 16 19 O -0.36 -4.94 11.56 -35.23 -0.41 -5.34 16 20 C 0.07 0.82 6.57 37.89 0.25 1.07 16 21 C -0.10 -1.11 0.85 -151.80 -0.13 -1.24 16 22 C 0.10 1.01 4.34 37.16 0.16 1.17 16 23 O -0.30 -3.32 9.72 -18.73 -0.18 -3.50 16 24 C 0.33 3.42 7.49 -17.12 -0.13 3.29 16 25 C -0.19 -1.60 10.04 -39.28 -0.39 -1.99 16 26 C -0.04 -0.26 10.17 -39.31 -0.40 -0.66 16 27 C -0.22 -1.32 10.11 -39.43 -0.40 -1.72 16 28 C 0.14 1.05 11.17 -17.57 -0.20 0.86 16 29 N -0.54 -5.59 9.22 -13.33 -0.12 -5.71 16 30 C 0.05 0.72 4.28 -2.28 -0.01 0.71 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.62 7.02 -51.93 -0.36 0.25 16 33 H 0.07 1.29 6.70 -51.93 -0.35 0.94 16 34 H 0.05 0.99 6.68 -51.93 -0.35 0.64 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.53 6.84 -51.93 -0.36 0.17 16 37 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.09 1.29 6.92 -51.93 -0.36 0.93 16 40 H 0.05 0.65 7.95 -51.93 -0.41 0.24 16 41 H 0.10 1.06 7.54 -51.93 -0.39 0.67 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.54 7.99 -51.93 -0.41 0.13 16 44 H 0.10 1.11 7.48 -51.93 -0.39 0.72 16 45 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 46 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 47 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 48 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 49 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 50 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 51 H 0.08 1.15 7.01 -51.93 -0.36 0.78 16 52 H 0.04 0.58 7.77 -51.93 -0.40 0.17 16 LS Contribution 408.01 15.07 6.15 6.15 Total: -1.00 -32.94 408.01 -10.51 -43.45 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -8.74 Total: -1.66 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.78 Total: -14.96 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.52 Total: -41.12 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.59 Total: -8.85 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.94 -10.51 -43.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500048.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.496 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds