Wall clock time and date at job start Sat Apr 11 2020 08:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47043 * 2 1 4 4 C 1.52998 * 109.47088 * 240.00217 * 2 1 3 5 5 C 1.53005 * 109.47187 * 65.65862 * 4 2 1 6 6 C 1.50698 * 109.47025 * 174.83183 * 5 4 2 7 7 H 1.07996 * 120.00060 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99844 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99982 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00171 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46884 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47040 * 119.99770 * 10 8 6 13 13 H 1.48498 * 109.47286 * 240.00074 * 10 8 6 14 14 N 1.46899 * 109.46961 * 120.00221 * 2 1 3 15 15 C 1.48515 * 110.99569 * 181.22849 * 14 2 1 16 16 C 1.54263 * 104.73642 * 159.33271 * 15 14 2 17 17 H 1.09001 * 112.13728 * 213.24843 * 16 15 14 18 18 C 1.54396 * 109.35452 * 86.82989 * 16 15 14 19 19 O 1.44383 * 104.92196 * 272.61220 * 18 16 15 20 20 C 1.45419 * 105.74678 * 319.67474 * 19 18 16 21 21 C 1.54396 * 104.41145 * 39.87124 * 20 19 18 22 22 C 1.53000 * 112.67992 * 213.96981 * 21 20 19 23 23 O 1.42903 * 109.47145 * 297.48071 * 22 21 20 24 24 C 1.35675 * 116.99935 * 179.97438 * 23 22 21 25 25 C 1.38920 * 119.68723 * 179.72625 * 24 23 22 26 26 C 1.38370 * 119.11473 * 180.26446 * 25 24 23 27 27 C 1.38831 * 118.48609 * 0.02562 * 26 25 24 28 28 C 1.38044 * 119.28654 * 0.02562 * 27 26 25 29 29 N 1.31956 * 120.83736 * 359.97438 * 28 27 26 30 30 C 1.48499 * 111.00255 * 296.61994 * 14 2 1 31 31 H 1.09000 * 109.47043 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46926 * 299.99716 * 1 2 3 33 33 H 1.09002 * 109.47229 * 59.99419 * 1 2 3 34 34 H 1.08994 * 109.47309 * 185.66065 * 4 2 1 35 35 H 1.08999 * 109.47150 * 305.66222 * 4 2 1 36 36 H 1.09003 * 109.46765 * 294.82977 * 5 4 2 37 37 H 1.09003 * 109.47113 * 54.82841 * 5 4 2 38 38 H 0.97004 * 120.00258 * 179.97438 * 9 8 6 39 39 H 1.08998 * 110.38454 * 278.14935 * 15 14 2 40 40 H 1.08994 * 110.38171 * 40.52124 * 15 14 2 41 41 H 1.09001 * 110.34734 * 31.47230 * 18 16 15 42 42 H 1.09002 * 110.34989 * 153.75109 * 18 16 15 43 43 H 1.08996 * 110.16176 * 281.38896 * 20 19 18 44 44 H 1.08998 * 111.02242 * 158.78097 * 20 19 18 45 45 H 1.09000 * 109.47374 * 177.47727 * 22 21 20 46 46 H 1.09007 * 109.46840 * 57.47989 * 22 21 20 47 47 H 1.08004 * 120.43881 * 0.29526 * 25 24 23 48 48 H 1.07997 * 120.75797 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.35531 * 179.97438 * 27 26 25 50 50 H 1.08001 * 119.57804 * 179.97438 * 28 27 26 51 51 H 1.09005 * 110.38121 * 81.86261 * 30 14 2 52 52 H 1.09001 * 110.38532 * 319.50053 * 30 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6494 0.0776 -2.4945 6 6 2.2591 -0.5638 -3.7143 7 1 2.8649 -1.4519 -3.6117 8 6 2.0444 -0.0160 -4.9612 9 7 1.3071 1.0658 -5.0861 10 14 2.8007 -0.8105 -6.4733 11 1 3.5797 -2.0074 -6.0662 12 1 1.7228 -1.2172 -7.4103 13 1 3.7004 0.1612 -7.1454 14 7 2.0196 -0.6925 1.1994 15 6 3.5039 -0.6866 1.2486 16 6 3.8484 -0.9381 2.7311 17 1 4.7579 -0.4198 3.0351 18 6 3.8980 -2.4586 2.9941 19 8 2.5386 -2.8252 3.3136 20 6 2.0275 -1.7531 4.1526 21 6 2.5930 -0.4648 3.5168 22 6 2.9134 0.6134 4.5540 23 8 1.7121 1.0034 5.2225 24 6 1.8222 1.9580 6.1802 25 6 0.6886 2.3831 6.8614 26 6 0.8136 3.3613 7.8321 27 6 2.0746 3.8828 8.0880 28 6 3.1574 3.4139 7.3716 29 7 3.0067 2.4799 6.4517 30 6 1.6114 0.0263 2.4330 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 3.1252 -0.8098 -1.2001 35 1 1.5962 -1.7154 -1.3014 36 1 0.5640 0.0881 -2.5936 37 1 2.0156 1.0999 -2.4000 38 1 1.1563 1.4514 -5.9634 39 1 3.9077 -1.4838 0.6245 40 1 3.8905 0.2806 0.9278 41 1 4.2333 -2.9869 2.1016 42 1 4.5569 -2.6766 3.8347 43 1 2.3958 -1.8659 5.1723 44 1 0.9377 -1.7341 4.1422 45 1 3.3492 1.4792 4.0554 46 1 3.6223 0.2183 5.2817 47 1 -0.2774 1.9554 6.6367 48 1 -0.0499 3.7112 8.3781 49 1 2.2068 4.6478 8.8389 50 1 4.1404 3.8165 7.5665 51 1 0.5875 -0.2332 2.7024 52 1 1.7069 1.1032 2.2941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172500048.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:03:10 Heat of formation + Delta-G solvation = -65.352612 kcal Electronic energy + Delta-G solvation = -30921.408829 eV Core-core repulsion = 26885.154058 eV Total energy + Delta-G solvation = -4036.254771 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -42.00912 -41.29381 -38.87866 -38.51853 -36.05494 -34.65240 -33.40921 -32.84589 -32.06184 -31.07452 -29.96971 -27.77327 -27.17435 -26.36577 -25.28463 -24.46014 -23.98142 -23.08776 -22.16257 -20.89641 -20.31705 -19.33940 -18.57918 -17.96602 -17.22891 -17.16870 -16.97072 -16.75420 -16.48631 -16.27888 -16.02825 -15.74849 -15.42346 -14.93471 -14.84434 -14.73688 -14.51654 -14.34176 -14.07095 -14.04024 -14.00328 -13.47037 -13.28799 -12.94176 -12.85744 -12.83460 -12.66710 -12.56986 -12.41872 -12.32651 -12.07108 -12.01653 -11.86153 -11.74204 -11.60398 -11.48293 -11.28954 -11.01025 -10.88751 -10.58983 -10.55840 -10.53612 -9.47047 -9.40460 -8.20804 -6.31431 0.22048 0.35229 1.38295 1.38900 1.52425 1.92027 2.39809 2.83939 2.85638 3.12011 3.12974 3.20406 3.32352 3.41395 3.78531 3.87523 3.94494 4.04887 4.07879 4.10357 4.11307 4.17263 4.23111 4.38663 4.39460 4.43761 4.46215 4.50660 4.60474 4.69232 4.72415 4.78856 4.80327 4.81082 4.84144 4.88543 4.90455 4.93656 4.97280 5.00619 5.04699 5.08599 5.19194 5.30791 5.33828 5.51014 5.55156 5.74335 5.84696 5.87028 5.96118 6.07213 6.26012 6.27589 6.85297 6.89294 7.37385 8.91164 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.002211 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.388989 B =12660.582274 C =13596.921364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.081 3.919 3 H 0.024 0.976 4 C -0.084 4.084 5 C 0.031 3.969 6 C -0.540 4.540 7 H 0.057 0.943 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.965 3.035 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.277 1.277 14 N -0.501 5.501 15 C 0.037 3.963 16 C -0.107 4.107 17 H 0.122 0.878 18 C 0.059 3.941 19 O -0.386 6.386 20 C 0.072 3.928 21 C -0.089 4.089 22 C 0.108 3.892 23 O -0.312 6.312 24 C 0.295 3.705 25 C -0.203 4.203 26 C -0.040 4.040 27 C -0.207 4.207 28 C 0.122 3.878 29 N -0.566 5.566 30 C 0.055 3.945 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.049 0.951 36 H -0.002 1.002 37 H -0.015 1.015 38 H 0.263 0.737 39 H 0.082 0.918 40 H 0.038 0.962 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.080 0.920 47 H 0.149 0.851 48 H 0.171 0.829 49 H 0.167 0.833 50 H 0.181 0.819 51 H 0.083 0.917 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 3.015 31.785 32.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.027 4.027 3 H 0.042 0.958 4 C -0.122 4.122 5 C -0.007 4.007 6 C -0.578 4.578 7 H 0.075 0.925 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.789 3.211 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.203 1.203 14 N -0.225 5.225 15 C -0.091 4.091 16 C -0.126 4.126 17 H 0.140 0.860 18 C -0.018 4.018 19 O -0.305 6.305 20 C -0.004 4.004 21 C -0.090 4.090 22 C 0.032 3.968 23 O -0.220 6.220 24 C 0.117 3.883 25 C -0.224 4.224 26 C -0.066 4.066 27 C -0.227 4.227 28 C -0.032 4.032 29 N -0.291 5.291 30 C -0.073 4.073 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.016 0.984 37 H 0.004 0.996 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.167 0.833 48 H 0.189 0.811 49 H 0.185 0.815 50 H 0.198 0.802 51 H 0.102 0.898 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.676 1.924 30.975 31.251 hybrid contribution 0.027 1.332 -0.950 1.636 sum 3.704 3.256 30.025 30.427 Atomic orbital electron populations 1.21726 0.94010 1.02090 1.01145 1.21734 0.96244 0.94403 0.90318 0.95835 1.21424 0.99369 0.98533 0.92865 1.18981 0.95243 0.93990 0.92481 1.21708 1.31331 1.11797 0.92998 0.92464 1.25985 0.95757 0.95553 1.02629 1.70106 1.40224 1.22440 1.24550 0.85402 0.78321 0.78671 0.78681 1.18667 1.20320 1.20264 1.65440 1.08172 1.47936 1.00952 1.23167 0.88897 1.00707 0.96328 1.23288 0.97722 0.97869 0.93704 0.86000 1.23460 0.84307 0.92555 1.01465 1.89269 1.27680 1.43644 1.69939 1.23495 0.99878 0.83684 0.93367 1.22636 0.96218 0.95750 0.94381 1.22300 0.85172 0.96140 0.93192 1.86211 1.35326 1.52338 1.48133 1.20163 0.90666 0.88636 0.88814 1.21378 0.98422 1.02361 1.00214 1.21861 0.99297 0.91908 0.93506 1.22383 0.93029 1.03818 1.03487 1.22953 1.01041 0.90201 0.89052 1.67324 1.25216 1.15101 1.21418 1.23023 0.99362 0.95506 0.89395 0.92223 0.91879 0.93375 0.93282 0.93224 0.98391 0.99626 0.92798 0.89922 0.94329 0.88832 0.90267 0.91204 0.89044 0.91971 0.90202 0.83349 0.81150 0.81506 0.80245 0.89845 0.94819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 8.89 71.98 0.64 -4.05 16 2 C 0.08 3.03 1.90 44.91 0.09 3.12 16 3 H 0.02 0.93 7.98 -2.39 -0.02 0.91 16 4 C -0.08 -3.70 4.62 30.60 0.14 -3.56 16 5 C 0.03 1.67 4.61 29.85 0.14 1.81 16 6 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 7 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 8 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 9 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 10 Si 0.96 45.39 29.54 68.60 2.03 47.41 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 N -0.50 -15.79 5.10 -857.13 -4.37 -20.17 16 15 C 0.04 1.02 4.83 86.42 0.42 1.44 16 16 C -0.11 -2.22 3.81 -9.04 -0.03 -2.25 16 17 H 0.12 1.95 7.96 -2.39 -0.02 1.93 16 18 C 0.06 1.21 7.09 72.46 0.51 1.72 16 19 O -0.39 -10.21 11.56 -148.98 -1.72 -11.94 16 20 C 0.07 1.58 6.57 72.46 0.48 2.06 16 21 C -0.09 -1.92 0.85 -50.43 -0.04 -1.97 16 22 C 0.11 2.15 4.34 71.98 0.31 2.47 16 23 O -0.31 -6.83 9.72 -89.92 -0.87 -7.71 16 24 C 0.30 6.05 7.49 84.79 0.63 6.69 16 25 C -0.20 -3.18 10.04 22.46 0.23 -2.96 16 26 C -0.04 -0.42 10.17 22.44 0.23 -0.19 16 27 C -0.21 -1.96 10.11 22.37 0.23 -1.73 16 28 C 0.12 1.64 11.17 84.63 0.95 2.58 16 29 N -0.57 -11.17 9.22 -308.96 -2.85 -14.02 16 30 C 0.06 1.48 4.28 86.42 0.37 1.85 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 1.92 7.02 -2.39 -0.02 1.91 16 33 H 0.05 1.89 6.70 -2.39 -0.02 1.87 16 34 H 0.05 2.11 6.68 -2.39 -0.02 2.10 16 35 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.00 -0.13 6.84 -2.39 -0.02 -0.15 16 37 H -0.01 -0.87 8.14 -2.39 -0.02 -0.88 16 38 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 39 H 0.08 2.39 6.92 -2.39 -0.02 2.37 16 40 H 0.04 1.12 7.95 -2.39 -0.02 1.10 16 41 H 0.09 1.96 7.54 -2.39 -0.02 1.94 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.07 1.30 7.99 -2.39 -0.02 1.28 16 44 H 0.09 2.06 7.48 -2.39 -0.02 2.04 16 45 H 0.06 1.34 8.10 -2.39 -0.02 1.33 16 46 H 0.08 1.44 8.10 -2.38 -0.02 1.42 16 47 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 48 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 49 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 50 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 51 H 0.08 2.26 7.01 -2.38 -0.02 2.24 16 52 H 0.03 0.96 7.77 -2.39 -0.02 0.94 16 Total: -1.00 -72.67 408.01 -0.65 -73.32 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.89 Total: 14.95 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 5.97 Total: -24.18 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -6.94 Total: -91.86 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -2.60 Total: -19.64 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -72.67 -0.65 -73.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500048.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.968 kcal (2) G-P(sol) polarization free energy of solvation -72.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds