Wall clock time and date at job start Sat Apr 11 2020 08:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46661 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99223 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00232 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47271 * 90.00229 * 13 11 9 15 15 H 1.48498 * 109.47371 * 210.00504 * 13 11 9 16 16 H 1.48506 * 109.46895 * 330.00403 * 13 11 9 17 17 N 1.46493 * 109.47372 * 239.99771 * 2 1 3 18 18 C 1.34778 * 120.00226 * 85.00029 * 17 2 1 19 19 O 1.21281 * 119.99825 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99836 * 179.97438 * 18 17 2 21 21 C 1.50707 * 109.47002 * 179.97438 * 20 18 17 22 22 C 1.38286 * 120.11440 * 269.72111 * 21 20 18 23 23 C 1.37928 * 120.34933 * 179.97438 * 22 21 20 24 24 C 1.39285 * 120.24013 * 0.56250 * 23 22 21 25 25 C 1.38878 * 118.87418 * 359.39949 * 24 23 22 26 26 C 1.37743 * 120.78886 * 0.42377 * 25 24 23 27 27 C 1.51649 * 107.03656 * 180.68806 * 25 24 23 28 28 C 1.54698 * 101.92085 * 15.47356 * 27 25 24 29 29 O 1.36134 * 129.88581 * 179.09372 * 24 23 22 30 30 H 1.08997 * 109.47849 * 300.00752 * 1 2 3 31 31 H 1.09002 * 109.47074 * 60.00645 * 1 2 3 32 32 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46993 * 65.00101 * 4 2 1 34 34 H 1.09004 * 109.47298 * 305.00515 * 4 2 1 35 35 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 36 36 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 37 37 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 38 38 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 39 39 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 40 40 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 41 41 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 42 42 H 0.97000 * 120.00516 * 179.97438 * 12 11 9 43 43 H 0.97003 * 119.99788 * 264.99268 * 17 2 1 44 44 H 1.09000 * 109.47305 * 299.99746 * 20 18 17 45 45 H 1.08993 * 109.47118 * 59.99813 * 20 18 17 46 46 H 1.07997 * 119.82716 * 0.17799 * 22 21 20 47 47 H 1.07996 * 119.87972 * 180.27934 * 23 22 21 48 48 H 1.08003 * 120.01260 * 179.76059 * 26 25 24 49 49 H 1.09004 * 110.94061 * 133.63706 * 27 25 24 50 50 H 1.09008 * 110.93646 * 257.28172 * 27 25 24 51 51 H 1.09001 * 110.75178 * 93.01995 * 28 27 25 52 52 H 1.09005 * 110.74799 * 216.18457 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0748 -1.3347 2.5629 7 6 5.5996 -1.2262 2.6277 8 7 6.0878 -1.9166 3.8239 9 6 7.4299 -1.9529 4.0937 10 1 8.1284 -1.4722 3.4247 11 6 7.8925 -2.6067 5.2274 12 7 7.0414 -3.1921 6.0429 13 14 9.7232 -2.6556 5.5958 14 1 10.0927 -1.4808 6.4255 15 1 10.0467 -3.9035 6.3328 16 1 10.4855 -2.6213 4.3218 17 7 2.0184 -0.6906 -1.1961 18 6 2.1471 -0.0183 -2.3571 19 8 1.8583 1.1583 -2.4117 20 6 2.6501 -0.7287 -3.5873 21 6 2.7001 0.2394 -4.7412 22 6 1.6019 0.3910 -5.5678 23 6 1.6422 1.2760 -6.6250 24 6 2.7947 2.0167 -6.8762 25 6 3.8908 1.8564 -6.0385 26 6 3.8471 0.9747 -4.9811 27 6 4.9745 2.7906 -6.5411 28 6 4.1774 3.7314 -7.4752 29 8 3.0542 2.9208 -7.8603 30 1 -0.3635 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.7516 -1.7713 1.2058 34 1 1.6053 -0.2615 2.1370 35 1 3.8530 0.4372 1.3574 36 1 3.9994 -1.0727 0.4262 37 1 3.6401 -0.8755 3.4507 38 1 3.7865 -2.3850 2.5188 39 1 6.0345 -1.6850 1.7398 40 1 5.8874 -0.1758 2.6719 41 1 5.4606 -2.3487 4.4245 42 1 7.3646 -3.6493 6.8350 43 1 2.2492 -1.6318 -1.1524 44 1 3.6494 -1.1205 -3.3977 45 1 1.9780 -1.5510 -3.8323 46 1 0.7068 -0.1841 -5.3827 47 1 0.7786 1.3917 -7.2630 48 1 4.7082 0.8571 -4.3399 49 1 5.4221 3.3468 -5.7175 50 1 5.7350 2.2418 -7.0967 51 1 3.8462 4.6198 -6.9374 52 1 4.7736 4.0082 -8.3448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174588678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:03:34 Heat of formation + Delta-G solvation = -56.779248 kcal Electronic energy + Delta-G solvation = -28946.302011 eV Core-core repulsion = 24910.419009 eV Total energy + Delta-G solvation = -4035.883002 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.40668 -40.09772 -38.00978 -36.84154 -35.24166 -33.29282 -33.04262 -32.58758 -31.35482 -30.25583 -29.57789 -27.51926 -27.44134 -24.26298 -23.80267 -22.62297 -22.22157 -21.72758 -20.82978 -20.65386 -20.46578 -17.70840 -17.32371 -17.06946 -17.01332 -16.57843 -16.43500 -15.52977 -15.19330 -14.91563 -14.70333 -14.41479 -14.07627 -13.91358 -13.85906 -13.53691 -13.49133 -13.32136 -13.16882 -12.98372 -12.94542 -12.78226 -12.42797 -12.18512 -12.13893 -11.92039 -11.76812 -11.45268 -11.26207 -11.15434 -11.06242 -10.98854 -10.81554 -10.70960 -10.42215 -10.31069 -10.00700 -9.96990 -9.66667 -9.20939 -9.15229 -8.85861 -8.33308 -6.90279 -5.75472 -3.03889 0.98633 1.07517 2.49447 2.86307 3.03762 3.43890 3.47537 3.48705 3.50574 4.04678 4.18058 4.41223 4.49585 4.55885 4.60749 4.63283 4.74844 4.79128 4.93365 4.94967 4.98576 5.02569 5.12133 5.18131 5.25698 5.30177 5.35673 5.41231 5.42697 5.45464 5.55019 5.61883 5.69713 5.76184 5.78679 5.89377 5.94129 5.95646 6.09176 6.10496 6.23143 6.24448 6.29997 6.30400 6.38273 6.40896 6.46322 6.87604 6.89386 6.93372 7.34194 7.70757 8.08529 8.43916 9.54612 10.13965 10.48475 11.47588 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.001707 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.021461 B =16396.428467 C =18295.676262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.724 5.724 18 C 0.514 3.486 19 O -0.533 6.533 20 C -0.099 4.099 21 C -0.091 4.091 22 C -0.070 4.070 23 C -0.136 4.136 24 C 0.102 3.898 25 C -0.173 4.173 26 C -0.053 4.053 27 C -0.111 4.111 28 C 0.052 3.948 29 O -0.307 6.307 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.401 0.599 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.124 0.876 49 H 0.092 0.908 50 H 0.090 0.910 51 H 0.077 0.923 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.954 8.203 -27.337 31.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.105 0.895 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.377 5.377 18 C 0.300 3.700 19 O -0.409 6.409 20 C -0.139 4.139 21 C -0.092 4.092 22 C -0.088 4.088 23 C -0.155 4.155 24 C 0.057 3.943 25 C -0.174 4.174 26 C -0.071 4.071 27 C -0.148 4.148 28 C -0.023 4.023 29 O -0.222 6.222 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.216 0.784 42 H 0.065 0.935 43 H 0.235 0.765 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.147 0.853 47 H 0.145 0.855 48 H 0.142 0.858 49 H 0.111 0.889 50 H 0.109 0.891 51 H 0.095 0.905 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.087 9.138 -27.597 32.304 hybrid contribution 1.097 -0.620 0.681 1.432 sum -12.990 8.518 -26.916 31.077 Atomic orbital electron populations 1.22171 0.95479 1.02006 1.02430 1.21023 0.93670 0.97704 0.83939 0.89460 1.21938 0.96854 1.00927 0.96762 1.21513 0.93977 1.01044 0.98610 1.21731 0.97236 1.00266 0.97135 1.20645 0.91021 0.95301 0.90543 1.42389 1.05336 1.64953 1.25208 1.19254 0.83941 1.28372 1.05446 0.91242 1.24749 0.97736 1.00984 0.97713 1.69659 1.32772 1.40794 1.15109 0.86178 0.85079 0.77026 0.77855 1.21728 1.21753 1.20781 1.46138 1.67662 1.14148 1.09711 1.20546 0.77682 0.87454 0.84341 1.90727 1.49368 1.15901 1.84893 1.20617 1.04231 0.97851 0.91196 1.19087 0.94320 0.99164 0.96603 1.20673 0.97702 0.97014 0.93451 1.20170 0.95818 0.99357 1.00144 1.19560 0.94307 0.91861 0.88570 1.20686 0.95528 1.02085 0.99093 1.20124 0.97870 0.93928 0.95215 1.21798 0.97158 0.96161 0.99678 1.23824 0.85608 0.93585 0.99326 1.86809 1.50329 1.45880 1.39133 0.91605 0.92330 0.92517 0.91345 0.90283 0.92052 0.92136 0.92075 0.92122 0.96653 0.96615 0.78351 0.93549 0.76505 0.87739 0.87867 0.85317 0.85469 0.85788 0.88931 0.89125 0.90496 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.48 37.16 0.35 -1.05 16 2 C 0.14 1.33 2.57 -67.94 -0.17 1.16 16 3 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 4 C -0.13 -1.20 4.75 -26.73 -0.13 -1.33 16 5 C -0.11 -1.35 5.10 -26.73 -0.14 -1.49 16 6 C -0.13 -1.96 5.33 -26.73 -0.14 -2.11 16 7 C 0.15 3.11 6.26 -4.05 -0.03 3.09 16 8 N -0.73 -19.10 5.60 -59.91 -0.34 -19.44 16 9 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 10 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 13 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 N -0.72 -6.07 4.53 -53.81 -0.24 -6.31 16 18 C 0.51 5.14 7.79 -10.98 -0.09 5.05 16 19 O -0.53 -7.58 15.70 5.56 0.09 -7.50 16 20 C -0.10 -0.71 5.84 -29.03 -0.17 -0.88 16 21 C -0.09 -0.84 4.38 -104.56 -0.46 -1.30 16 22 C -0.07 -0.63 9.68 -39.68 -0.38 -1.02 16 23 C -0.14 -1.32 10.06 -39.31 -0.40 -1.71 16 24 C 0.10 1.09 7.04 -38.96 -0.27 0.81 16 25 C -0.17 -1.72 6.27 -104.10 -0.65 -2.37 16 26 C -0.05 -0.52 9.70 -39.72 -0.39 -0.91 16 27 C -0.11 -0.79 7.12 -26.52 -0.19 -0.97 16 28 C 0.05 0.35 8.01 38.05 0.30 0.65 16 29 O -0.31 -3.15 11.10 -20.17 -0.22 -3.37 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 42 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.40 2.46 8.60 -40.82 -0.35 2.10 16 44 H 0.10 0.58 8.09 -51.93 -0.42 0.16 16 45 H 0.10 0.48 8.09 -51.93 -0.42 0.06 16 46 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 47 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 48 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 49 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 51 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 427.81 15.07 6.45 6.45 Total: -1.00 -35.68 427.81 -10.79 -46.47 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -9.03 Total: 5.90 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -3.19 Total: -11.93 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.15 Total: -53.61 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.14 Total: -10.87 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -35.68 -10.79 -46.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174588678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.314 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds