Wall clock time and date at job start Sat Apr 11 2020 08:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46661 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99223 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00232 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47271 * 90.00229 * 13 11 9 15 15 H 1.48498 * 109.47371 * 210.00504 * 13 11 9 16 16 H 1.48506 * 109.46895 * 330.00403 * 13 11 9 17 17 N 1.46493 * 109.47372 * 239.99771 * 2 1 3 18 18 C 1.34778 * 120.00226 * 85.00029 * 17 2 1 19 19 O 1.21281 * 119.99825 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99836 * 179.97438 * 18 17 2 21 21 C 1.50707 * 109.47002 * 179.97438 * 20 18 17 22 22 C 1.38286 * 120.11440 * 269.72111 * 21 20 18 23 23 C 1.37928 * 120.34933 * 179.97438 * 22 21 20 24 24 C 1.39285 * 120.24013 * 0.56250 * 23 22 21 25 25 C 1.38878 * 118.87418 * 359.39949 * 24 23 22 26 26 C 1.37743 * 120.78886 * 0.42377 * 25 24 23 27 27 C 1.51649 * 107.03656 * 180.68806 * 25 24 23 28 28 C 1.54698 * 101.92085 * 15.47356 * 27 25 24 29 29 O 1.36134 * 129.88581 * 179.09372 * 24 23 22 30 30 H 1.08997 * 109.47849 * 300.00752 * 1 2 3 31 31 H 1.09002 * 109.47074 * 60.00645 * 1 2 3 32 32 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46993 * 65.00101 * 4 2 1 34 34 H 1.09004 * 109.47298 * 305.00515 * 4 2 1 35 35 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 36 36 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 37 37 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 38 38 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 39 39 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 40 40 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 41 41 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 42 42 H 0.97000 * 120.00516 * 179.97438 * 12 11 9 43 43 H 0.97003 * 119.99788 * 264.99268 * 17 2 1 44 44 H 1.09000 * 109.47305 * 299.99746 * 20 18 17 45 45 H 1.08993 * 109.47118 * 59.99813 * 20 18 17 46 46 H 1.07997 * 119.82716 * 0.17799 * 22 21 20 47 47 H 1.07996 * 119.87972 * 180.27934 * 23 22 21 48 48 H 1.08003 * 120.01260 * 179.76059 * 26 25 24 49 49 H 1.09004 * 110.94061 * 133.63706 * 27 25 24 50 50 H 1.09008 * 110.93646 * 257.28172 * 27 25 24 51 51 H 1.09001 * 110.75178 * 93.01995 * 28 27 25 52 52 H 1.09005 * 110.74799 * 216.18457 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0748 -1.3347 2.5629 7 6 5.5996 -1.2262 2.6277 8 7 6.0878 -1.9166 3.8239 9 6 7.4299 -1.9529 4.0937 10 1 8.1284 -1.4722 3.4247 11 6 7.8925 -2.6067 5.2274 12 7 7.0414 -3.1921 6.0429 13 14 9.7232 -2.6556 5.5958 14 1 10.0927 -1.4808 6.4255 15 1 10.0467 -3.9035 6.3328 16 1 10.4855 -2.6213 4.3218 17 7 2.0184 -0.6906 -1.1961 18 6 2.1471 -0.0183 -2.3571 19 8 1.8583 1.1583 -2.4117 20 6 2.6501 -0.7287 -3.5873 21 6 2.7001 0.2394 -4.7412 22 6 1.6019 0.3910 -5.5678 23 6 1.6422 1.2760 -6.6250 24 6 2.7947 2.0167 -6.8762 25 6 3.8908 1.8564 -6.0385 26 6 3.8471 0.9747 -4.9811 27 6 4.9745 2.7906 -6.5411 28 6 4.1774 3.7314 -7.4752 29 8 3.0542 2.9208 -7.8603 30 1 -0.3635 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.7516 -1.7713 1.2058 34 1 1.6053 -0.2615 2.1370 35 1 3.8530 0.4372 1.3574 36 1 3.9994 -1.0727 0.4262 37 1 3.6401 -0.8755 3.4507 38 1 3.7865 -2.3850 2.5188 39 1 6.0345 -1.6850 1.7398 40 1 5.8874 -0.1758 2.6719 41 1 5.4606 -2.3487 4.4245 42 1 7.3646 -3.6493 6.8350 43 1 2.2492 -1.6318 -1.1524 44 1 3.6494 -1.1205 -3.3977 45 1 1.9780 -1.5510 -3.8323 46 1 0.7068 -0.1841 -5.3827 47 1 0.7786 1.3917 -7.2630 48 1 4.7082 0.8571 -4.3399 49 1 5.4221 3.3468 -5.7175 50 1 5.7350 2.2418 -7.0967 51 1 3.8462 4.6198 -6.9374 52 1 4.7736 4.0082 -8.3448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174588678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:03:33 Heat of formation + Delta-G solvation = -78.753533 kcal Electronic energy + Delta-G solvation = -28947.254887 eV Core-core repulsion = 24910.419009 eV Total energy + Delta-G solvation = -4036.835878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.05447 -40.86762 -38.70665 -37.85767 -36.76149 -34.74119 -33.69603 -33.41133 -32.68888 -31.49596 -30.18690 -28.80871 -28.15692 -25.92034 -24.43479 -23.82764 -23.02542 -22.64549 -22.01989 -21.57893 -21.19000 -19.12111 -18.35710 -18.05177 -17.71459 -17.33386 -17.06545 -16.68200 -16.40840 -15.97755 -15.84202 -15.41483 -15.26914 -15.07782 -14.77129 -14.59167 -14.47648 -14.14399 -14.12714 -14.03060 -13.88755 -13.43434 -13.28134 -13.04025 -12.88945 -12.83915 -12.79460 -12.71136 -12.51531 -12.43056 -12.24204 -12.14931 -11.87575 -11.79450 -11.75860 -11.69199 -11.47275 -11.37168 -10.93820 -10.80210 -9.98810 -9.83810 -9.01888 -9.01197 -7.96500 -5.25728 0.29677 0.37315 1.46673 1.48762 1.57287 1.75204 2.21300 2.39239 2.55320 2.79852 3.36811 3.45846 3.61627 3.62668 3.80315 3.95232 4.04157 4.07396 4.09650 4.12278 4.18212 4.25207 4.37443 4.40488 4.41891 4.45667 4.62520 4.63314 4.65230 4.66577 4.70487 4.81632 4.84230 4.87466 4.89603 4.95642 5.01024 5.04146 5.12713 5.15864 5.26364 5.28696 5.34460 5.40143 5.46450 5.47427 5.54420 5.58030 5.65147 5.67095 6.21000 6.26402 6.68004 7.32083 7.38438 8.09084 8.32246 9.27017 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.001707 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.021461 B =16396.428467 C =18295.676262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.145 3.855 3 H 0.062 0.938 4 C -0.116 4.116 5 C -0.104 4.104 6 C -0.113 4.113 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.250 4.250 10 H 0.074 0.926 11 C -0.077 4.077 12 N -0.969 5.969 13 Si 0.976 3.024 14 H -0.287 1.287 15 H -0.293 1.293 16 H -0.269 1.269 17 N -0.714 5.714 18 C 0.513 3.487 19 O -0.581 6.581 20 C -0.093 4.093 21 C -0.099 4.099 22 C -0.078 4.078 23 C -0.150 4.150 24 C 0.077 3.923 25 C -0.188 4.188 26 C -0.071 4.071 27 C -0.109 4.109 28 C 0.046 3.954 29 O -0.327 6.327 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.020 0.980 40 H 0.011 0.989 41 H 0.374 0.626 42 H 0.252 0.748 43 H 0.415 0.585 44 H 0.124 0.876 45 H 0.133 0.867 46 H 0.149 0.851 47 H 0.137 0.863 48 H 0.131 0.869 49 H 0.101 0.899 50 H 0.102 0.898 51 H 0.081 0.919 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.736 7.465 -28.097 32.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.081 0.919 4 C -0.154 4.154 5 C -0.142 4.142 6 C -0.151 4.151 7 C 0.022 3.978 8 N -0.392 5.392 9 C -0.382 4.382 10 H 0.092 0.908 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.214 1.214 15 H -0.219 1.219 16 H -0.194 1.194 17 N -0.367 5.367 18 C 0.300 3.700 19 O -0.461 6.461 20 C -0.132 4.132 21 C -0.100 4.100 22 C -0.096 4.096 23 C -0.168 4.168 24 C 0.032 3.968 25 C -0.189 4.189 26 C -0.089 4.089 27 C -0.146 4.146 28 C -0.028 4.028 29 O -0.241 6.241 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.038 0.962 40 H 0.029 0.971 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.252 0.748 44 H 0.142 0.858 45 H 0.151 0.849 46 H 0.167 0.833 47 H 0.155 0.845 48 H 0.149 0.851 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.099 0.901 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.865 8.392 -28.386 32.687 hybrid contribution 1.007 -0.347 0.891 1.388 sum -12.858 8.045 -27.496 31.402 Atomic orbital electron populations 1.22105 0.94607 1.02812 1.01949 1.20886 0.94268 0.96549 0.84302 0.91934 1.21835 0.94721 1.02014 0.96846 1.21415 0.95796 0.99980 0.96999 1.21606 0.93718 1.00991 0.98739 1.20861 0.94270 0.94196 0.88508 1.42633 1.04516 1.65357 1.26670 1.19662 0.85367 1.27727 1.05445 0.90841 1.25608 1.02259 1.01216 0.97820 1.69812 1.34689 1.41899 1.15545 0.85112 0.79863 0.76695 0.77923 1.21405 1.21906 1.19386 1.46065 1.66868 1.14747 1.09010 1.21026 0.76793 0.86915 0.85252 1.90714 1.51620 1.18088 1.85658 1.20677 1.05944 0.97707 0.88890 1.19403 0.94138 0.99339 0.97124 1.20975 0.98464 0.96997 0.93120 1.20469 0.96133 0.99517 1.00709 1.19868 0.95085 0.92629 0.89194 1.21068 0.96347 1.02447 0.99034 1.20385 0.98606 0.94352 0.95533 1.21877 0.96791 0.95892 1.00064 1.24085 0.85004 0.93195 1.00530 1.86769 1.51581 1.46263 1.39522 0.91013 0.93940 0.90991 0.89625 0.89991 0.92922 0.91200 0.92666 0.91743 0.96234 0.97067 0.79432 0.93920 0.74826 0.85800 0.84863 0.83302 0.84490 0.85062 0.88077 0.87946 0.90122 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.48 71.98 0.68 -1.76 16 2 C 0.14 2.50 2.57 44.99 0.12 2.62 16 3 H 0.06 1.43 7.58 -2.38 -0.02 1.41 16 4 C -0.12 -1.93 4.75 30.59 0.15 -1.78 16 5 C -0.10 -2.28 5.10 30.60 0.16 -2.13 16 6 C -0.11 -3.36 5.33 30.60 0.16 -3.20 16 7 C 0.15 5.92 6.26 86.38 0.54 6.46 16 8 N -0.75 -38.88 5.60 -343.47 -1.92 -40.80 16 9 C -0.25 -14.27 9.99 84.03 0.84 -13.43 16 10 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 11 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 12 N -0.97 -59.61 13.06 21.65 0.28 -59.32 16 13 Si 0.98 46.29 29.55 68.60 2.03 48.32 16 14 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 15 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 N -0.71 -10.43 4.53 -442.54 -2.00 -12.44 16 18 C 0.51 9.53 7.79 87.66 0.68 10.21 16 19 O -0.58 -16.50 15.70 -3.03 -0.05 -16.55 16 20 C -0.09 -1.12 5.84 29.10 0.17 -0.95 16 21 C -0.10 -1.75 4.38 -19.83 -0.09 -1.84 16 22 C -0.08 -1.35 9.68 22.21 0.21 -1.13 16 23 C -0.15 -2.93 10.06 22.45 0.23 -2.70 16 24 C 0.08 1.68 7.04 22.68 0.16 1.84 16 25 C -0.19 -3.74 6.27 -19.53 -0.12 -3.86 16 26 C -0.07 -1.36 9.70 22.18 0.22 -1.15 16 27 C -0.11 -1.49 7.12 30.73 0.22 -1.27 16 28 C 0.05 0.60 8.01 72.56 0.58 1.18 16 29 O -0.33 -6.77 11.10 -95.07 -1.06 -7.82 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.42 7.75 -2.39 -0.02 1.40 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.37 20.42 7.67 -92.71 -0.71 19.71 16 42 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.41 3.75 8.60 -92.71 -0.80 2.96 16 44 H 0.12 1.03 8.09 -2.39 -0.02 1.01 16 45 H 0.13 0.80 8.09 -2.39 -0.02 0.78 16 46 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 47 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 48 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 49 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 51 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -77.85 427.81 2.05 -75.81 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -0.60 Total: 29.69 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 5.37 Total: -16.88 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -3.65 Total: -112.57 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -1.10 Total: -24.37 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -77.85 2.05 -75.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174588678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.947 kcal (2) G-P(sol) polarization free energy of solvation -77.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds