Wall clock time and date at job start Sat Apr 11 2020 08:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47251 * 2 1 4 4 C 1.52997 * 109.47284 * 120.00352 * 2 1 3 5 5 C 1.53001 * 109.47364 * 185.00171 * 4 2 1 6 6 C 1.52997 * 109.47643 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47643 * 179.97438 * 6 5 4 8 8 N 1.46490 * 109.47207 * 179.97438 * 7 6 5 9 9 C 1.36943 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99681 * 0.02562 * 9 8 7 11 11 C 1.38806 * 119.99989 * 180.02562 * 9 8 7 12 12 N 1.31620 * 120.00471 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99696 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47186 * 60.00177 * 13 11 9 15 15 H 1.48504 * 109.47030 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47285 * 299.99730 * 13 11 9 17 17 N 1.46508 * 109.47266 * 240.00243 * 2 1 3 18 18 C 1.34772 * 120.00097 * 84.99339 * 17 2 1 19 19 O 1.21280 * 120.00018 * 5.08553 * 18 17 2 20 20 C 1.50697 * 119.99941 * 185.07643 * 18 17 2 21 21 H 1.09000 * 109.43952 * 335.67395 * 20 18 17 22 22 C 1.53074 * 109.43963 * 215.75190 * 20 18 17 23 23 C 1.53405 * 108.29691 * 191.77149 * 22 20 18 24 24 O 1.42829 * 108.37901 * 64.72089 * 23 22 20 25 25 C 1.35840 * 117.85943 * 310.83470 * 24 23 22 26 26 C 1.39149 * 118.49537 * 196.99904 * 25 24 23 27 27 C 1.37967 * 120.21755 * 180.23376 * 26 25 24 28 28 C 1.38293 * 119.95506 * 0.31722 * 27 26 25 29 29 C 1.38102 * 119.98347 * 359.40615 * 28 27 26 30 30 C 1.38369 * 121.80801 * 17.17878 * 25 24 23 31 31 H 1.09000 * 109.47185 * 300.00012 * 1 2 3 32 32 H 1.09000 * 109.47362 * 60.00473 * 1 2 3 33 33 H 1.09005 * 109.47426 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47035 * 304.99631 * 4 2 1 35 35 H 1.09000 * 109.47779 * 64.99673 * 4 2 1 36 36 H 1.09000 * 109.47016 * 300.00057 * 5 4 2 37 37 H 1.09000 * 109.47079 * 59.99074 * 5 4 2 38 38 H 1.09007 * 109.46811 * 300.00339 * 6 5 4 39 39 H 1.08998 * 109.46944 * 59.99765 * 6 5 4 40 40 H 1.09001 * 109.46604 * 299.99989 * 7 6 5 41 41 H 1.09000 * 109.47079 * 59.99338 * 7 6 5 42 42 H 0.96997 * 120.00399 * 0.02562 * 8 7 6 43 43 H 0.97000 * 120.00123 * 179.97438 * 12 11 9 44 44 H 0.97004 * 119.99572 * 265.00212 * 17 2 1 45 45 H 1.09006 * 109.69259 * 72.07474 * 22 20 18 46 46 H 1.08996 * 109.70028 * 311.47759 * 22 20 18 47 47 H 1.09001 * 109.68533 * 304.99692 * 23 22 20 48 48 H 1.09002 * 109.71377 * 184.45905 * 23 22 20 49 49 H 1.08008 * 119.89114 * 0.25372 * 26 25 24 50 50 H 1.07999 * 120.02197 * 180.02562 * 27 26 25 51 51 H 1.07996 * 120.00409 * 179.67513 * 28 27 26 52 52 H 1.07993 * 119.84607 * 180.25392 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0748 -1.3341 2.5631 7 6 5.5997 -1.2266 2.6273 8 7 6.0879 -1.9162 3.8240 9 6 7.4301 -1.9533 4.0933 10 1 8.1286 -1.4737 3.4236 11 6 7.8927 -2.6072 5.2269 12 7 7.0414 -3.1912 6.0434 13 14 9.7237 -2.6583 5.5938 14 1 10.2373 -1.2730 5.7439 15 1 9.9554 -3.4107 6.8529 16 1 10.4338 -3.3312 4.4767 17 7 2.0183 -0.6906 -1.1963 18 6 2.1469 -0.0183 -2.3572 19 8 1.9472 1.1775 -2.3908 20 6 2.5392 -0.7523 -3.6135 21 1 3.0796 -1.6611 -3.3489 22 6 3.4384 0.1447 -4.4679 23 6 3.5797 -0.4959 -5.8546 24 8 2.2960 -0.5019 -6.4808 25 6 1.2431 -0.9767 -5.7657 26 6 0.0816 -1.3270 -6.4473 27 6 -1.0108 -1.8084 -5.7558 28 6 -0.9551 -1.9377 -4.3800 29 6 0.1979 -1.5964 -3.7009 30 6 1.2986 -1.1145 -4.3900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6054 -0.2618 2.1369 35 1 1.7516 -1.7716 1.2056 36 1 3.9994 -1.0728 0.4259 37 1 3.8531 0.4369 1.3572 38 1 3.6401 -0.8742 3.4507 39 1 3.7865 -2.3843 2.5199 40 1 6.0340 -1.6868 1.7397 41 1 5.8885 -0.1764 2.6702 42 1 5.4606 -2.3472 4.4253 43 1 7.3648 -3.6484 6.8354 44 1 2.2490 -1.6318 -1.1527 45 1 4.4199 0.2316 -4.0016 46 1 2.9877 1.1324 -4.5636 47 1 3.9426 -1.5186 -5.7514 48 1 4.2795 0.0828 -6.4575 49 1 0.0353 -1.2219 -7.5212 50 1 -1.9106 -2.0797 -6.2880 51 1 -1.8116 -2.3095 -3.8374 52 1 0.2404 -1.7021 -2.6270 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175719781.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:04:55 Heat of formation + Delta-G solvation = -63.650417 kcal Electronic energy + Delta-G solvation = -29949.750030 eV Core-core repulsion = 25913.569072 eV Total energy + Delta-G solvation = -4036.180958 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.46228 -39.78355 -37.87386 -37.10288 -35.30447 -34.60950 -33.26266 -31.59593 -30.98512 -30.61384 -30.26370 -27.47673 -26.82356 -24.38781 -24.09238 -23.16392 -22.25663 -21.39882 -20.82711 -20.66165 -20.10025 -18.39687 -17.39590 -17.16016 -17.00087 -16.52729 -16.38465 -15.39379 -15.17355 -14.95333 -14.72830 -14.66141 -14.22922 -14.17635 -14.00360 -13.68808 -13.63762 -13.47648 -13.16406 -12.98764 -12.93006 -12.80660 -12.38607 -12.31866 -11.91533 -11.79828 -11.50915 -11.44945 -11.29652 -11.25987 -11.05079 -11.00146 -10.80411 -10.72864 -10.45115 -10.32737 -10.08789 -10.01487 -9.67171 -9.28613 -9.18545 -8.85932 -8.53840 -6.90964 -5.75779 -3.04328 0.87882 1.04881 2.34156 2.79998 2.94832 3.39002 3.44187 3.48155 3.49526 4.05726 4.18575 4.27120 4.40758 4.51200 4.62932 4.69430 4.70023 4.73969 4.83401 4.89979 4.95320 5.02485 5.07851 5.10749 5.16312 5.22006 5.36864 5.41390 5.45791 5.53496 5.58313 5.59197 5.66247 5.71144 5.76190 5.86406 5.88736 5.92202 6.01928 6.07234 6.14700 6.19250 6.28607 6.34632 6.37395 6.37933 6.44893 6.88244 6.92255 7.04383 7.22948 7.69850 7.95794 8.43631 9.54201 10.13421 10.47934 11.47203 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.001840 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.943854 B =15216.181791 C =16162.837573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 H 0.090 0.910 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.240 4.240 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.722 5.722 18 C 0.528 3.472 19 O -0.532 6.532 20 C -0.064 4.064 21 H 0.102 0.898 22 C -0.148 4.148 23 C 0.063 3.937 24 O -0.315 6.315 25 C 0.143 3.857 26 C -0.150 4.150 27 C -0.084 4.084 28 C -0.151 4.151 29 C -0.082 4.082 30 C -0.150 4.150 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.401 0.599 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.068 0.932 48 H 0.113 0.887 49 H 0.132 0.868 50 H 0.129 0.871 51 H 0.125 0.875 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.981 3.098 -25.793 31.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.108 0.892 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.371 4.371 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.374 5.374 18 C 0.313 3.687 19 O -0.407 6.407 20 C -0.085 4.085 21 H 0.120 0.880 22 C -0.186 4.186 23 C -0.012 4.012 24 O -0.229 6.229 25 C 0.097 3.903 26 C -0.169 4.169 27 C -0.102 4.102 28 C -0.169 4.169 29 C -0.100 4.100 30 C -0.151 4.151 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.236 0.764 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.086 0.914 48 H 0.131 0.869 49 H 0.149 0.851 50 H 0.147 0.853 51 H 0.143 0.857 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.948 4.074 -25.992 31.848 hybrid contribution 1.053 -0.772 0.829 1.547 sum -16.895 3.302 -25.163 30.488 Atomic orbital electron populations 1.22191 0.95355 1.02098 1.02556 1.21075 0.93686 0.97909 0.83836 0.89205 1.21936 0.96900 1.00915 0.96700 1.21515 0.93934 1.01110 0.98614 1.21727 0.97259 1.00254 0.97105 1.20642 0.90998 0.95323 0.90539 1.42379 1.05321 1.65050 1.25130 1.19207 0.83918 1.28514 1.05451 0.91294 1.24754 0.97752 1.00970 0.97694 1.69651 1.32857 1.40768 1.15086 0.86250 0.85086 0.77485 0.77267 1.21269 1.21656 1.21279 1.46222 1.67356 1.14147 1.09642 1.20170 0.76667 0.87554 0.84260 1.90703 1.49796 1.14624 1.85621 1.20157 0.95099 0.99875 0.93399 0.87986 1.22185 1.00858 1.00433 0.95142 1.23020 0.82722 1.01553 0.93859 1.85998 1.15854 1.79007 1.42036 1.18642 0.88329 0.94111 0.89169 1.20609 0.92140 1.03670 1.00482 1.20974 0.97613 0.97323 0.94252 1.21018 0.98217 1.03137 0.94518 1.21009 0.92259 0.96759 0.99980 1.19323 0.96591 1.06754 0.92435 0.91380 0.92354 0.92430 0.90172 0.91325 0.92190 0.91989 0.92042 0.92142 0.96684 0.96601 0.78347 0.93485 0.76424 0.89038 0.88691 0.91423 0.86860 0.85056 0.85270 0.85696 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.48 37.15 0.35 -1.01 16 2 C 0.14 1.29 2.62 -67.93 -0.18 1.11 16 3 H 0.09 1.02 7.51 -51.93 -0.39 0.63 16 4 C -0.13 -1.18 4.75 -26.73 -0.13 -1.30 16 5 C -0.11 -1.35 5.10 -26.73 -0.14 -1.49 16 6 C -0.13 -1.96 5.33 -26.73 -0.14 -2.10 16 7 C 0.15 3.11 6.26 -4.05 -0.03 3.09 16 8 N -0.73 -19.12 5.60 -59.91 -0.34 -19.45 16 9 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 12 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 13 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 N -0.72 -6.19 3.81 -53.81 -0.21 -6.40 16 18 C 0.53 5.57 5.75 -10.99 -0.06 5.51 16 19 O -0.53 -7.69 15.70 5.56 0.09 -7.60 16 20 C -0.06 -0.55 2.72 -92.85 -0.25 -0.80 16 21 H 0.10 0.66 8.08 -51.93 -0.42 0.24 16 22 C -0.15 -1.21 5.35 -26.48 -0.14 -1.35 16 23 C 0.06 0.43 7.03 37.37 0.26 0.70 16 24 O -0.32 -3.02 10.27 -19.24 -0.20 -3.22 16 25 C 0.14 1.41 6.47 -39.20 -0.25 1.15 16 26 C -0.15 -1.28 9.94 -39.34 -0.39 -1.68 16 27 C -0.08 -0.61 10.04 -39.66 -0.40 -1.01 16 28 C -0.15 -1.17 10.04 -39.61 -0.40 -1.56 16 29 C -0.08 -0.71 9.10 -39.53 -0.36 -1.07 16 30 C -0.15 -1.42 5.42 -104.44 -0.57 -1.98 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.69 7.75 -51.93 -0.40 0.28 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.38 10.39 7.67 -40.82 -0.31 10.08 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.40 2.64 8.56 -40.82 -0.35 2.29 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 0.98 7.46 -51.93 -0.39 0.60 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 50 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 51 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 52 H 0.13 0.97 6.80 -52.49 -0.36 0.61 16 LS Contribution 420.20 15.07 6.33 6.33 Total: -1.00 -34.78 420.20 -10.61 -45.39 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -8.93 Total: 6.62 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -3.06 Total: -11.39 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.18 Total: -53.74 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.11 Total: -10.82 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.78 -10.61 -45.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175719781.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.260 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds