Wall clock time and date at job start Sat Apr 11 2020 08:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47131 * 2 1 4 4 C 1.52995 * 109.47274 * 239.99882 * 2 1 3 5 5 C 1.53000 * 109.47266 * 175.00235 * 4 2 1 6 6 C 1.52999 * 109.46917 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46917 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.47382 * 180.02562 * 7 6 5 9 9 C 1.36937 * 120.00254 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99854 * 0.02562 * 9 8 7 11 11 C 1.38812 * 120.00181 * 179.71934 * 9 8 7 12 12 N 1.31619 * 119.99658 * 0.28414 * 11 9 8 13 13 Si 1.86791 * 120.00217 * 180.27479 * 11 9 8 14 14 H 1.48499 * 109.47011 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46823 * 120.00291 * 13 11 9 16 16 H 1.48495 * 109.47371 * 240.00590 * 13 11 9 17 17 N 1.46496 * 109.46600 * 119.99924 * 2 1 3 18 18 C 1.34777 * 120.00393 * 274.99871 * 17 2 1 19 19 O 1.21284 * 119.99739 * 354.92390 * 18 17 2 20 20 C 1.50700 * 120.00441 * 174.92791 * 18 17 2 21 21 H 1.09001 * 109.43688 * 24.33876 * 20 18 17 22 22 C 1.53065 * 109.43894 * 144.25833 * 20 18 17 23 23 C 1.53414 * 108.29024 * 168.25456 * 22 20 18 24 24 O 1.42824 * 108.37283 * 295.25025 * 23 22 20 25 25 C 1.35852 * 117.85899 * 49.15044 * 24 23 22 26 26 C 1.39143 * 118.49889 * 162.98311 * 25 24 23 27 27 C 1.37975 * 120.21439 * 179.82212 * 26 25 24 28 28 C 1.38285 * 119.95929 * 359.97438 * 27 26 25 29 29 C 1.38106 * 119.98090 * 0.07366 * 28 27 26 30 30 C 1.38375 * 121.80472 * 342.92585 * 25 24 23 31 31 H 1.09001 * 109.46801 * 59.99916 * 1 2 3 32 32 H 1.08994 * 109.47279 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47294 * 300.00210 * 1 2 3 34 34 H 1.09003 * 109.46864 * 55.00045 * 4 2 1 35 35 H 1.08998 * 109.47009 * 295.00610 * 4 2 1 36 36 H 1.08997 * 109.47023 * 60.00406 * 5 4 2 37 37 H 1.08995 * 109.46690 * 300.00144 * 5 4 2 38 38 H 1.08997 * 109.47456 * 60.00503 * 6 5 4 39 39 H 1.08995 * 109.47548 * 299.99607 * 6 5 4 40 40 H 1.09003 * 109.47335 * 60.00086 * 7 6 5 41 41 H 1.09006 * 109.47303 * 299.99817 * 7 6 5 42 42 H 0.97003 * 119.99896 * 0.02562 * 8 7 6 43 43 H 0.97002 * 119.99946 * 179.97438 * 12 11 9 44 44 H 0.97003 * 120.00056 * 95.00596 * 17 2 1 45 45 H 1.09004 * 109.69784 * 287.94911 * 22 20 18 46 46 H 1.08995 * 109.70505 * 48.55283 * 22 20 18 47 47 H 1.09001 * 109.68652 * 54.97586 * 23 22 20 48 48 H 1.09008 * 109.68331 * 175.53126 * 23 22 20 49 49 H 1.08000 * 119.89356 * 359.79451 * 26 25 24 50 50 H 1.08005 * 120.01767 * 179.97438 * 27 26 25 51 51 H 1.08002 * 120.00735 * 180.10765 * 28 27 26 52 52 H 1.08003 * 119.83498 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0748 -1.3341 -2.5632 7 6 5.5996 -1.2267 -2.6272 8 7 6.0879 -1.9163 -3.8240 9 6 7.4300 -1.9525 -4.0938 10 1 8.1285 -1.4730 -3.4240 11 6 7.8931 -2.6109 -5.2247 12 7 7.0418 -3.1955 -6.0406 13 14 9.7244 -2.6668 -5.5886 14 1 10.4628 -1.9396 -4.5251 15 1 10.1782 -4.0803 -5.6278 16 1 9.9880 -2.0256 -6.9017 17 7 2.0182 -0.6906 1.1962 18 6 2.1469 -0.0183 2.3572 19 8 1.9472 1.1775 2.3908 20 6 2.5391 -0.7523 3.6136 21 1 3.0796 -1.6611 3.3490 22 6 3.4382 0.1446 4.4680 23 6 3.5798 -0.4965 5.8545 24 8 2.2963 -0.5023 6.4810 25 6 1.2430 -0.9764 5.7658 26 6 0.0817 -1.3270 6.4474 27 6 -1.0107 -1.8089 5.7559 28 6 -0.9529 -1.9438 4.3808 29 6 0.1985 -1.5977 3.7012 30 6 1.2989 -1.1155 4.3902 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.6054 -0.2617 -2.1369 35 1 1.7516 -1.7715 -1.2055 36 1 3.9994 -1.0729 -0.4259 37 1 3.8532 0.4369 -1.3572 38 1 3.6402 -0.8741 -3.4507 39 1 3.7864 -2.3843 -2.5200 40 1 6.0339 -1.6869 -1.7397 41 1 5.8885 -0.1765 -2.6703 42 1 5.4605 -2.3466 -4.4258 43 1 7.3654 -3.6553 -6.8311 44 1 2.2490 -1.6318 1.1526 45 1 4.4195 0.2321 4.0017 46 1 2.9872 1.1322 4.5641 47 1 3.9425 -1.5191 5.7509 48 1 4.2797 0.0826 6.4570 49 1 0.0354 -1.2221 7.5213 50 1 -1.9104 -2.0804 6.2882 51 1 -1.8081 -2.3193 3.8385 52 1 0.2412 -1.7045 2.6273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175719783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:14 Heat of formation + Delta-G solvation = -63.849461 kcal Electronic energy + Delta-G solvation = -29949.683930 eV Core-core repulsion = 25913.494341 eV Total energy + Delta-G solvation = -4036.189589 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.46222 -39.78377 -37.87427 -37.10431 -35.30775 -34.61016 -33.26608 -31.59721 -30.98544 -30.61444 -30.26557 -27.47953 -26.82396 -24.39016 -24.09430 -23.16492 -22.26028 -21.40080 -20.82859 -20.66385 -20.10115 -18.39727 -17.39620 -17.16068 -17.00521 -16.52780 -16.38577 -15.39465 -15.17494 -14.95455 -14.73152 -14.66215 -14.22938 -14.17637 -14.00449 -13.68971 -13.63965 -13.47316 -13.17526 -12.98869 -12.92842 -12.80651 -12.38607 -12.31977 -11.91548 -11.80302 -11.51000 -11.45149 -11.29943 -11.26059 -11.05261 -11.00507 -10.83550 -10.73301 -10.42349 -10.33252 -10.08728 -9.97679 -9.68258 -9.28693 -9.18570 -8.87241 -8.53922 -6.91190 -5.76491 -3.04875 0.87831 1.04829 2.34035 2.79884 2.94772 3.39011 3.42927 3.48367 3.50822 4.05664 4.18528 4.27012 4.40670 4.51038 4.62660 4.69380 4.69951 4.73888 4.83326 4.89895 4.95214 5.02413 5.07808 5.10688 5.16257 5.21911 5.36743 5.41304 5.45729 5.53275 5.58238 5.59000 5.66143 5.71081 5.76005 5.86303 5.88661 5.92085 6.01873 6.07099 6.14652 6.19127 6.28370 6.34529 6.37034 6.37873 6.44665 6.87988 6.91972 7.04312 7.22835 7.70508 7.95701 8.42933 9.53697 10.12919 10.47413 11.46670 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015317 B = 0.001840 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.590619 B =15213.502190 C =16159.572393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 H 0.090 0.910 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.722 5.722 18 C 0.528 3.472 19 O -0.532 6.532 20 C -0.064 4.064 21 H 0.102 0.898 22 C -0.148 4.148 23 C 0.063 3.937 24 O -0.315 6.315 25 C 0.143 3.857 26 C -0.150 4.150 27 C -0.084 4.084 28 C -0.151 4.151 29 C -0.082 4.082 30 C -0.150 4.150 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.401 0.599 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.068 0.932 48 H 0.113 0.887 49 H 0.132 0.868 50 H 0.129 0.871 51 H 0.125 0.875 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.988 3.145 25.850 31.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.108 0.892 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.213 4.213 12 N -0.583 5.583 13 Si 0.739 3.261 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.374 5.374 18 C 0.313 3.687 19 O -0.407 6.407 20 C -0.085 4.085 21 H 0.120 0.880 22 C -0.186 4.186 23 C -0.012 4.012 24 O -0.229 6.229 25 C 0.098 3.902 26 C -0.169 4.169 27 C -0.102 4.102 28 C -0.169 4.169 29 C -0.100 4.100 30 C -0.151 4.151 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.236 0.764 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.086 0.914 48 H 0.131 0.869 49 H 0.149 0.851 50 H 0.147 0.853 51 H 0.143 0.857 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.950 4.129 26.067 31.918 hybrid contribution 1.041 -0.790 -0.848 1.558 sum -16.909 3.340 25.219 30.546 Atomic orbital electron populations 1.22191 0.95355 1.02098 1.02555 1.21075 0.93688 0.97909 0.83837 0.89205 1.21936 0.96899 1.00916 0.96701 1.21514 0.93936 1.01109 0.98612 1.21726 0.97255 1.00259 0.97108 1.20647 0.91003 0.95326 0.90537 1.42398 1.05350 1.65065 1.25090 1.19300 0.83916 1.28186 1.05535 0.91177 1.24758 0.97767 1.00952 0.97775 1.69673 1.32672 1.40779 1.15208 0.86102 0.85046 0.77217 0.77768 1.20564 1.21865 1.21844 1.46220 1.67359 1.14145 1.09640 1.20173 0.76664 0.87554 0.84261 1.90704 1.49794 1.14623 1.85624 1.20155 0.95106 0.99870 0.93397 0.87988 1.22186 1.00859 1.00430 0.95148 1.23023 0.82729 1.01547 0.93857 1.86000 1.15842 1.79044 1.42012 1.18645 0.88327 0.94104 0.89171 1.20609 0.92136 1.03684 1.00476 1.20975 0.97610 0.97314 0.94262 1.21018 0.98250 1.03101 0.94525 1.21009 0.92275 0.96743 0.99975 1.19321 0.96582 1.06763 0.92437 0.91388 0.92429 0.92348 0.90171 0.91325 0.92187 0.91987 0.92039 0.92137 0.96666 0.96591 0.78351 0.93589 0.76425 0.89037 0.88692 0.91417 0.86861 0.85056 0.85270 0.85694 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.48 37.16 0.35 -1.01 16 2 C 0.14 1.29 2.62 -67.93 -0.18 1.11 16 3 H 0.09 1.02 7.51 -51.93 -0.39 0.63 16 4 C -0.13 -1.18 4.75 -26.73 -0.13 -1.30 16 5 C -0.11 -1.35 5.10 -26.73 -0.14 -1.49 16 6 C -0.13 -1.96 5.33 -26.73 -0.14 -2.10 16 7 C 0.15 3.11 6.26 -4.04 -0.03 3.08 16 8 N -0.74 -19.11 5.60 -59.91 -0.34 -19.44 16 9 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 11 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 12 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 13 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 17 N -0.72 -6.19 3.81 -53.81 -0.21 -6.39 16 18 C 0.53 5.57 5.76 -10.99 -0.06 5.50 16 19 O -0.53 -7.69 15.70 5.55 0.09 -7.60 16 20 C -0.06 -0.55 2.71 -92.86 -0.25 -0.80 16 21 H 0.10 0.66 8.08 -51.93 -0.42 0.24 16 22 C -0.15 -1.21 5.35 -26.48 -0.14 -1.35 16 23 C 0.06 0.43 7.03 37.37 0.26 0.70 16 24 O -0.32 -3.02 10.27 -19.28 -0.20 -3.22 16 25 C 0.14 1.41 6.47 -39.20 -0.25 1.15 16 26 C -0.15 -1.28 9.94 -39.34 -0.39 -1.67 16 27 C -0.08 -0.61 10.04 -39.66 -0.40 -1.01 16 28 C -0.15 -1.16 10.04 -39.61 -0.40 -1.56 16 29 C -0.08 -0.71 9.10 -39.53 -0.36 -1.07 16 30 C -0.15 -1.42 5.43 -104.44 -0.57 -1.98 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.69 7.75 -51.93 -0.40 0.28 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 43 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.40 2.64 8.56 -40.82 -0.35 2.29 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 0.98 7.46 -51.93 -0.39 0.60 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.11 0.54 8.14 -51.92 -0.42 0.12 16 49 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 50 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 51 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 52 H 0.13 0.97 6.80 -52.48 -0.36 0.61 16 LS Contribution 420.20 15.07 6.33 6.33 Total: -1.00 -34.83 420.20 -10.61 -45.44 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -8.93 Total: 6.52 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -3.06 Total: -11.37 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.18 Total: -53.73 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.11 Total: -10.82 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.83 -10.61 -45.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175719783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.406 kcal (2) G-P(sol) polarization free energy of solvation -34.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds